RNA id: XM_036957597.1


Basic Information

Item Value
RNA id XM_036957597.1
length 6370
RNA type mRNA
GC content 0.50
exon number 33
gene id LOC110501060
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30169479 ~ 30218776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTCCCACAATGCCCTTGTCGGGGCCGGAGATGGATGCTGCCTGCTGCAGCTCGTGAGCTTCTGTTGAGCTGACGCTTGTTTTCCCTGCCGCAGCTCGTGCTGCCATTTCCAGACGGTCATCTCCGAATAGCCGTTCGCGATCACCATCTCGTGCTTGACCGTGCGGCGAACACAGTTCCCCGCCGCTTTGGGTTCCTTCAACAAACGCGACCATAAAAAGGACGGACACTGTCATCCAGCGAAACCCACCGTAGACCGTCTCTGTCTCCCGGAGTAGCCGGGGAGAGGGGGTCCAGCGTCAGCCGCAGCATGAGCATGGACCCCCTGGCCAAGCCCTGCCCGTCCCAGGCGGAGCACACCCCCGGGACCTTCAGCGGCCGGCTGACGGCGCTGGAAGCTGCGGGGGAGGACAGCGAGTCCGGCTGCGGCGAAGAGGAGGCCATGGGGGGCAGCGATACGTTCACTAGCCTCGTCGAGATGGAGGTGGAGACGCTGGAGGAGAAATTAAAGGGTCTGGCTTTTAGGAAACAGACTTCGTATAGgAAAGCCATCTCGCGGTCGGGTCTCCAGCACTTGGCCCCGGTCCACAAACCCATGCCCCCCATCACAAACGGACCGTCCAAGGAGATACGCACGTTCGTTGACTGGacagagactGCTGTGAACGGAGACCACCTGTGGCTGGAGACCAGTTGTTCTGGAGAGCTGTGCTACCTGGGAGAAGACACCTGTGTACTGAAGACTGCAAAGTCTGCCCCCAGGAGGAAGTGCGGAGCGTGTAAGATCGTAGTCCACACCGCCTGCATCGAGCAGCTcgacaagatTAACTTCCGCTGTAAACCAACGTTTAGAGAAGGAGGCTCTCGCTGCCTCAGAGATAATATGTTGAGGCATCACTGGGTGCACCGGCGCCGCCAAGAGGGGAAATGCAGACAGTGTGGGAAGAGCTTCCAGCAGAAGTTCTTCCACAGTAAAGAGATTGTGGCCATCAGTTGCTCCTGGTGCAAACAAGCTTTCCATAACAAGGTGACGTGTTTCCAGCTACATCAGATTGAGGAGCCCTGTTCACTGGGGGCTCACGCCGGGGTCATCGTCCCCCCCTCCTGGATCATCAAAGTCAGGAAGCCACAGAGCTCATTCAAAAACTCTACAAGGAGGAAAAAACGCACATCATTCAAAAGAAGGACCAGTAAGAGAGGAACTGACGAGTCAAAGTGGCGCCCATTCATGCTGAagccccttccctcccctctgatGAAACCTGTTCTAGTCTTTGTCAACCCCAAGAGTGGAGGCAACCAGGGTACTAAGGTGTTACAGATGTTTATGTGGATCCTGAACCCTCGCCAGGTGTTTGATCTCTCCCAGGGAGGGCTCAGAGAGGCGTTGGAGTTGTACAGGAAAGTGCCAAACCTGCGTATCCTGGCCTGTGGAGGAGACGGGACGGTGGGGTGGATCCTGTCTGCTCTGGATGAGTTAGGAATGACCCCCCATCCGCCTGTAGCAGTACTTCCTCTGGGGACAGGAAATGACCTCGCCAGGACTCTCAACTGGGGAGGGggttATACAGACGAGCCGGTGTCCAAGGTACTGTGTCAGGTGGAGGATGGCTCTGTGGTGCAGCTAGACAGATGGAACCTTCAGGTGGAGAGAAGCCCCGCCCAGCCGGAGGAGGGCACACAGAAGCTCCCACTGAACGTGTTCAACAACTACTTCAGCCTCGGCTTCGACGCCAACGTCACACTGGAGTTCCACGAATCCAGAGAAGCCAACCCTGAGAAGTTCAATAGTCGCTTTCGCAACAAGATGTTCTATGCAGGGGCTGCGTTCTCCGACTTCCTCCAGAGGAGCTCCAGGGATCTGTCTAAACACGTCAGAGTGGTGTGTGACGGGACGGATCTCACTGCTAAGATCCAGGAGCAGAAGTTCCAGTGCATCGTCTTCTTAAACATCCCCAGgtactgtGCGGGCACCATGCCGTGGGGGAACACAGGAGACCACCGGGATTTTGAGCCTCAGCGCCATGACGACGGCTGTATTGAAGTCATCGGCTTCACCATGTCCTcccttGCGGCACTGCAGGTAGGAGGTCATGGTGAGAGGCTGCACCAGTGTAGAGAGGTGACTCTGACCACCTTTAAGACCATCGCTGTACAGGTGGATGGAGAGCCGTGTCGCTTGGCCCCCTCAACCCTCCGGATCTCCCTACGCAACCAGGCCAACATGGTACAGAAGAGCAAGAGACGCACCTCAGTACCCCTGCTTAAtgaTATTCAGAAAGTGTGTGCAGCAGACCTGCGCCGCCTTTCTGCTCCCCCTGACTCCTTCTCTGTcCCCCATGCTGTCCCCGAGCGCCTCCGCCTCAGAGTCAACCGGATCAGTCTGCAGGACCACGACAGGCTACAGTTCGACAAGGAACGACTCCGAGacatctcggTCGCCGTGGGGATTGTGGTGGTGAGAGGGGACTGTGACCTGGAGACCTGCAGACTCTACATAGACAGGCTACAggagGATCTTCATCAGGCTCCATCTGCTGGCCACCGAGTGCATTACCAGGATGAGTGTCGAGGTCTACCGCGACCTGGCTCCGCCCACAGGCTGTCCCCCAACTGGAGCTTCCTGGACTCTACGTCCGCAGACCGTTTCTACCGCATAGACAAGGCCCAGGAGCACCTGCACTATGTGACGGAAATCTGCCAGGAAGAGGTGTTTATCCTGGACCACGATGGACTAGCGGGGGGACCGGCCACAGGCATGCCTGACCTGGTGGTGGAGCCCAACTctggGAGCCCTCTGACGTCTGAGGAACAAGcACTGCTGACGGCCGCCTCCTCTGGGGACCTGACTACGTTGTCGGGCAGCTTCTTTCGCGGGACCAGCCTCCTGGTGAGGGATTCTACTGGTTGTAGTGCACTACACCTGGCCTCTCAGCACGGACACACTGAAGTGGTCCGCTTCATACTGGAGCAcgggtCAAAGGTGCTCCTGGATTTAACCAACAGAGAAACAGGAGATACTGCCTTGCACAAAGCGGCCTCTCGGAAGCATCACGCTGTGTGTCGTCTTCTCATGGACTCCGGAGCTTCCCTCATCAAGACCAACTTCAAGGGTAAGACCCCAGTAGAGCAAGCTCGTGATGCGGGGGACCAAGAGCTGGCCTCCTACCTGACCAGCAAACAGCTCCCTACCACTGTCTCCCACGAAGATCTAGAGACTGctgtatgagagagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagagagagagagagagagagagagaggacttcacatggagagaggggaggacagagagaagaggatgagagatggaggagagaggtaaGCCCCCTTCACCTCCATAGATTGACTGAGGGATGGACAGGCGGATGGACAGACAGGAGCAGCCTGACGTGCTTTAgactctgttctatcctgcaCAGGAAAATGTTTCATCAAAATTAATATTGTTTATtattgcttttatttatttattgattgattgtaaACGTATGGGAGTGTTGGGGTATGGAGTTGCCTGTTGTTCACTGAATACCACGGTCTGGGCTAGGTTAGGGTTcagggggttaggggtcagggatcAGAGGTGAGGGTTCGCAGACACACAGACCCTCTCTCAGTGTGGCCCTGCAGCCTTACATACTGTACCAACGCGGTTCAACCACGGTTAAACATACATAGTTTCAATGTATGTATTTCCCAGAAGGCCTTTGTGAATCATTCAGACGTGTGCCAACGACACGCAGCACTGTGAGGCAGGGACAGCACCCAGCACCCTccatactactaccactgctacatTAGGATACCACTACTGCTATCCCAACAACACTGCTAGGCTTGTAGACAACCAATTCTAAGCCTCCATAACCCCCCCCCTGGAGGCCAGTATGGGACTGAGATGAGTGGACAGACAGCTGGGCAGACAAAGAAAAGAGAGACGGACTGATTCTTCATGCAGCCCCGGGGACCCATTACACACCCAACCTAGAGCTCTACCCGAGCAGCATGTACATACCTacagaatgtgtgtttgtgtgttcagttCTTTTAGACTTGCGTGTGCGTGCATATGCGTGTTTGTGTGatgcagagacagagggggagtgtgtgtgtgtgtgtgggggtggggggggggtggggggctgcTTGAGAGAGAATAGTAAAAAAAAAGATTCTGAGCCATATTCAATGCAATATGAATGAATGATTTTTGTGCATTTCCCTATTCATGTTTACATTACATTAATGTTTTAACAGTGCTTTATGGCACCAAGGAGTGTTGAATGTGCAATTTCTTAccgtgctggtgtgtgtgtgtggtgtgtgtgtggctgtgtttcTGTTGTTGTGGACACCTCAAAGGGGTGGGTTTAGTTTGGTTGACTTTATATGATTTAAACACTAAAACTACTGTTAGGTATTGTAAAAACAGCTGTAATGTGTTAAGATGACTGTTCTGAAAACCAAGACAGATGTACTTTAGTACTTGACCTTGTTTTATTTATTCAGCGTCTACCAGTGGTCGAATATGACCTGGGAAATGTTAATGTTTTTATGTTGttctgcctccctccatcccccactaCCCTGCCTGGACGTGCTTAGCGCCACAAACCATAGAGATAGATTGAGGAATCTAAATGAATATAACCCGTTTTAGCATGGGCATTTCCATTAAGTTTTCAACCATTTTCTtttagtcaactgggtggggattcctatggttGGGACTTTCAGCCAATGATCCGAGCATTGTCTTCCACTTCTTCAAATCGGGTTGCCTATGGTTTGCAAATGGCTTTAAGATAtattactgccatctagtggccacgaTAAATAAACGACACACAAGATTTTGTTCAGGATTCTAGAACTGCAGGTGGTGGTAAATTGCCAATACTAGCTTTTCACTTTTTTTTCAAATACAAATTgagaagaaaattgactactcTAAAATGGAGATGCCCATGCAGTCACATATGCCATtttggcacagatacaaagatgagtcctctatctatctctatgagaCAAACATCCATTATTTATGATTATTGTGAATAAATTGGATAtgattttgtattattttgtgtTCTTTATTATTCAACATTGTTGTGCATGCCATTTTCCTTCCCTCCTTAGAAGTTGCTACCACATAATAATGGCATCACAAActggcattattattattatgttattatcaTTGTTAAGATTTGAATAGTTTTATACCTAAGTATATATGGGTAAGGTTTGAAGTGTTTAATGGTTCTACTTTTGCTTTTGTATTTTTCAGACCATGGGATTACTTGAatgttgttgtttattttgtaTTCTCTAAAAGTCGTATAGTGCTGCCTCTCACAACGTTTCCTGTGTTTTGATTGGTCATTGACGTGATGTCACAGTGAGGTCACAGTAATGAGGGCCTGTGAGGAGAGTCTCTTGAAGTCTCCCAACGTTCTTAGTGTCTGTGAAGATGAATTTGAACACTAGTGTGGTTGAATATCAAGGCAGCCTGCCCCTAACCCTAGGAAATAACCTTAGAGAACATAATAAGAGAACCTAGTGGGAATGCTGTATATTCAGTCTACTGAGAGACCTTATCAGTAGTCAGTTAGTCTCCGCAGTGTGCCTGTTAGATAACCTGTAATTATAATGATTCAGACCGGTGTCTGTGTCAAATACTCGAGGTGTGCTTTGCTTGTCTggtacaatggaaccaatagaatagtagCAAAAGTGCAAACTCCACCCAACCTGCATGCTAGTCAAGCCAAATGAAGTGCACCTCAAGTATTTAACGAATCGGACCTAGGTCTGACCTTTACCCTCCTATAACCCAGTAATACCCAGTACTACAGGGCGTTGATAAGGCCGGTACAGACATGGAGAACAATAGCTGCTGGTCATACTGGGTACTACTACTTCTAGATTTCTTTAGCTTCTTTTGAGTTTACACTGATTTCCCTCAATCCCCATTTTCCCCCCACAGGGATTGGTTAGTGCCATATTGAGTCTTTCGATGTTACAGTAACAAAGATGTTGCAGATGTTACAAGAACTTTCTGAAATAATCGGACCTCAAACCAAAAACACTCTTCTCCCACAGATATCTTCCAACGGGGACTTAAAAGGTTTTCACCCAAAATCACTGTTGTTCAACTGTTAAATGTTCTGCAAGTTATTTGGGGAAATAAAATGATGTTTGAGAGGCAAATAAAGCATGCCGGGGTGTACAATTGTAACATCTGAATAATCGTATAATTTTAGAAGAAGATTAAAGTTTTCATTGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976574 lncRNA upstream 2963 30164176 ~ 30166516 (+) True LOC110500212
TU1976590 lncRNA upstream 38417 30130753 ~ 30131062 (+) True G1725438
TU1976588 lncRNA upstream 40349 30128864 ~ 30129130 (+) True G1725436
TU1976584 lncRNA upstream 44595 30124673 ~ 30124884 (+) True G1725432
TU1976534 lncRNA upstream 94276 30073456 ~ 30075203 (+) True cin
TU1976637 lncRNA downstream 7194 30225970 ~ 30226172 (+) True G1725474
TU1976638 lncRNA downstream 7895 30226671 ~ 30226875 (+) True G1725475
TU1976644 lncRNA downstream 27765 30246541 ~ 30246855 (+) True G1725481
TU1977033 lncRNA downstream 78037 30296813 ~ 30297582 (+) True G1725840
TU1977007 lncRNA downstream 192493 30411269 ~ 30411616 (+) True G1725817
XM_021577428.2 mRNA upstream 2827 30139073 ~ 30166652 (+) False LOC110500212
XM_021577429.2 mRNA upstream 2827 30139127 ~ 30166652 (+) False LOC110500212
XM_021577430.2 mRNA upstream 31116 30135626 ~ 30138363 (+) False LOC110500213
XM_021577431.2 mRNA upstream 31116 30135645 ~ 30138363 (+) True LOC110500213
XR_005038434.1 mRNA upstream 33934 30131073 ~ 30135545 (+) True LOC110500214
XM_036957600.1 mRNA downstream 45323 30264099 ~ 30410281 (+) False LOC110500216
XM_036957601.1 mRNA downstream 45323 30264099 ~ 30410281 (+) False LOC110500216
XM_036957602.1 mRNA downstream 45323 30264099 ~ 30410281 (+) False LOC110500216
XM_036957603.1 mRNA downstream 45323 30264099 ~ 30410281 (+) False LOC110500216
XM_036957604.1 mRNA downstream 45323 30264099 ~ 30410281 (+) True LOC110500216
TU1976442 other upstream 277522 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 909550 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 909550 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 909614 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 955196 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 363226 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 386524 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 386524 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 663067 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 921821 31140597 ~ 31141090 (+) True G1726863

Expression Profile