RNA id: XM_036957600.1


Basic Information

Item Value
RNA id XM_036957600.1
length 8192
RNA type mRNA
GC content 0.50
exon number 52
gene id LOC110500216
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30264099 ~ 30410281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTCTCCTCTCAATCCAATATGAAGATACAGtagccgctctctctctcctgcaatCTGAACAATGACTTCAGAGCGGAGGAAAGGAATTCAATAGCCTAGAATGCGTTATACAGCACGAAATATCTGCATTGAGCTGCTGTTCTCACAAATTACTTTAATGTACCAATCGTAAATATGTGGATACCTACAGAACACGAGAAATACGGCGTCGTGCTGGCCAGTTTCCGAGGGACGGTCCAGCATGGCTTGCCATTGGAGATTGGGGACACGGTGCAGCTCCTGGAGAAATGTGAAGGCTGGTACAGAGGGTTCGTCCATAAGAATCCAAATGCCAAGGGTATTTTCCCATGCACTTACATTCACTTGAAGAACGCCCATATCAAGAACAAAGGGCAGTTTGAGACAGTCATCCCGACAGAGGACTCTGTTATCACTGAGATGACATCCACCCTGAGAGACTGGGGGGCCATGTGGAAACGGCTCTACGTGGTAAAGAGTGTTCAACACACACATaaGAATGAGGGGGATCTGTTCCATCGGTTGTGGCACGTGATGAATGAGATCCTAGACCTGAGGAGACAGGTTCTGGTTGGTCACCTCACCAACGACCGCATGAAAGACGTCAAACAGCACATCACTGCCAGGTTGGACTGGGGAAACGAacaaCTGAGTTTGGACCTGGTACCCCGCAGGGAGTTCAGCATGGTGGACCCAGATGAGATCAGCGTCACAGAACTCTTCAAACTGATGGAGCACCGTCACCGTAAGAAGGAGACTCCGGTGCCGGCCAGCACGCACCACCTCTTCGTCCACATGAAGAGCCTGATGAGCTCCAACCTGGGAGAGGAGCTGGAGGTGTTCTTCCACATCTACGACGGCAGGGAGAACAGGCCACTCAGTGAGAGGTTCTTTGTCAGACTGAATAAGAACGGAGTGCCCAAGTCGccggagaagacagagagacagtgcaCCCTCTTTGTGGATTTGGGGAGCAGCGATCTCAGAAAAGACGTCTACATTGTTGTTCACATTATGAGAATTGGGCGGATGGGCGCTGGGGAGAAGAAGAACCTGTGTAGTATCCAGTACAGACGGCCCTTTGGCTGTGCTGTGGTCAGTATCGCAGACCTTCTCACGGCAGACTCTAAAGACGACCACCTACTGAAGGTTTACGCATGTACCACGGAAAGCGAGTGGTATCAAATCCACGAGAACATCATCAGAAAGGTCAACTCCAGATACAACCTATCAGGTTCCAACACGGGCCTGGCTGTATCTCTCCAGTTGCTGCACGGGGACATTGAACAGCTGAGGAGAGAGTACATGGTGTTGTTCACCAGAGGAGTGTCCATCACCAAGAAACTGGGCTTCTCTGACATCATCATGCCAGGAGAGATGAGGAATGACCTTTACATGACGCTGGAGAAAGGAGAGTTTGAGAAAGGAGGGAAGAGCGTTGCCAGGAACGTGGAGATCACGGTCTATGTGCTGGACATCgaaggccaggtcatgaagagtTATGTAGCGGCTGGTTCAGGGGAGCCTGGTGGGGATGAGTACCACTCCTTTGTGCTCTACCACAACAACAGTCCCCGCTGGGCTGAGCAGATCAAACTACCCATCCCTGTGGACATGTTCAGGGGCGCGCACGTCCGCTTTGAGTTCAGACACTGCTCCACGAAAGACAAAGGGGAGAAGAAGCTGTTTGGCTACTCCTTCGTTCATCTGATGCAGGAGGACGGACGGACATTGCCGGACGGCACCCACGAGCTCATCATTCATaagTGTGAGGAAAATGCTAACCTCCAGGACTCTAGCCGTTACCTCAAGCTGCCCTTCTCCAAAGCCAATCTGCCCGGCAACAACCAGGCTGTGAAAGGCACCAAGGAATCCTTTTGGATCACCTCCTTCCTCTGCTCCACTAAACTCACACAGAATGGTGACATGTTAGACCTGCTGAAGTGGAGAGCCCACCCAGAGAAGATCAATGACAGCCTGTCAAAGCTGAAAGAGATCGATGGCTCTGAGATAGTCAAGTTTTTACAGGACACACTTGATACACTCTTTGGGATCTTGGACGAGAGTTCCCAGAGGTATGGGCTGAAGGTGTTTGACTGCCTGGTCCACATCATTAACCTGCTACAGGACAGCAAGTTCCAGCATTTCAAGCCCGTCATGGATACCTACATCGAGAGTCACTTTGCTGGAGCCTTGTCTTACAgGGACCTGATCAAAGTACTGAAGTGGTACGTGGATCGCATCGTAGATGCCGAGCACCAAGATCACATTCAGCAGGTCCTCAAGGCCACGGAGTACATCTTTAAGTACATCATCCAGTCCCGGCGTCTCTTCGCTCTCGCCACGGGGGGTCAGAGCGAGGAGGAGTTCCGCTGCTGCATCCACGAGCTCTTCATGTCTATCCGCTTCTTCCTGTCCCAGGAGAACAAGATCACCAGCCCTGTCACGCagacacagGCGGTGTTCCTGCGGACGTTCCCTGCGGTGTACGGGGAGCTGCTGAAGATCTTCACGGTGAGGGAGGTGGCAGGCTTTGTCAGGGAGACGCTGGGCAGCCTGCCCGCCACCGCTCACGCTGAGTGCCCTCTGGAAGCCGTCAAGCTGCATTGTATCGCCAAGACCGTGGAGAGCCAGCTGTACACCAACCCAGAGTCGAGGTGTATCCTGCTCCCGGTGGTGTTGCGTCTGTTGCAGGCCCACATGCAGGAGCAGAGAGACCTGGTGATGTGTGCCCGTATCCTCACCAGCATGCTCTCTCTCATCAGGAAGGATGACTCTGTCACCACCGATCCGGTGGTTTCTGAGGAGGTGGATCTGATAGTGGACAGTCTGCTGGTTGTCCTGATGAGGACTATCCTTGAGATCACTAACAGGCCACAACCAGCCGGGACCAATATGAGACTGCAGTTCCAAGACATCacgggggAGTTTGTGGCATGCCTGCTGGCTCTCCTCAGACAGATGAGTGATAAACATTACCAGCAGCTCCTGCAGACCTTCACCAGCAAGGATGACCTGAGGGACTTCCTCTTGCAGATCTTCACCGTGTTCCGCATTCTGATTCGGCCAGAGATGTTCCCGAAAGATTGGACTGTCATGCGGTTGGTCACCAACAAtgtcATCATAACAACAGTCCTGTACCTCTCTGATGCTCTGAGGAAGAACTTCCTCAATGAGAAGTTTGACTACAAGGTGTGGGACTCGTACTTCTATCTGTCCGTCATCTTCATCAACCAGCCCTGTCTTCAACTGGAGTCCTTCTCTCCATCCAAGAGGAAGAGGGTACTGGAGAAGTATGGGGACATGAGGGTGATGATGGGTTGTGAGATCTTCAGCATGTGGCAGAACTTGGgtgaGCACAAGTTGAACTTCATCCCGGCGATGATAGGTCCGTTCCTGGAGGTGACCCTGGTTCCCCAGCCTGACCTGAGGAACGTCATGATCCCTATCTTCCATGACATGATGGACTGGGAGCAAAGGAGGAGCGGAAACTTCAAACAGGTGGAGGCCAAGCTGATCGACAAACTGGACAGTCTGATGTCAGAAGGCAAAGGAGACGAGACGTACAGAGAGCTCTTCAACAGCATAATCCCTCTGTTTGGTCCGTACCCTAGtCTGTTGAAGAAGATTGAGAGGGAGACGTGGAGGGAGAGTGGCATCTCTCTCATCGCCACCGTCACGCGTCTGATGGAGAGGCTGCTGGACTACAGGGACTGCATGAAGCTGGGGGAGGTGGATGGGAAGAAGATTGGCTGCACCGTCAGTCTGCTGAATTTCTACAAAACTGAGTTGAACAAGGAGGAGATGTACATACGCTACATACACAAGCTGTACGAACTGCACCTGAAAGCACAGAATTACACAGAGGCCTCCTACACGCTTCTGTTGTATGACGAGCTGTTGGAGTGGTCCGATAGGCCCCTCAGAGAGTTCCTCAACTACCCCATGCAGAGCGAGTGGCAGAGGAAGGAGTACCTCCATCTTACCATTGTACAGAACTTTGACAGAGGGAAGTGTTGGGAGAACGGGATCATTCTGTGCAGAGAGCTGGCGGACCAGTACGAATCCTACTACGACTACAGGAACCTCAGCAAGATGAGGATGATGGAGGCATCGCTGTATGATAAGATCATGGACCAGCAGAGACTGGAGCCAGAGTTCTTCAGGGTCGGCTTCTATGGCAAGAAGTTCCCCTTCTTCCTAAGGAATAAGGAGTTTGTGTGCCGTGGCCATGACTACGAGAGGCTGGAGGCCTTCCAGCAGCGCATGCTGAATGAGTTCCCCCATGCCATCGCCATGCAGCACGTCAACCAGCCTGACCAGACCATCTACCAGGCCGAGGCTCAGTACCTACAGATCTACGCGGTGAGCCCCATCCCAGAGAGCCAGGACGTGCTGCAGAGAGACGGAGTGCCTGACAACATCAAGAGCTTCTATAAGGTCAACCACATCTGGAGGTTCAGATACGACAGGCCATTTCACAAGGGCACCAAGGACAAGGAGAACGAGTTCAAGagcTTGTGGGTGGAGAGGactacactaaccctggtccaGAGCCTGCCAGGAATCTCCAGATGGTTcgaggtggagaagagagaacTGGTGGAAGTGAGCCCGTTGGAGAATGCCATCGAGGTGATTGAGAACAAGAACCTGCAGTTACGGACACTGATCGCCCAGTGCCAGAGCAGGCAGATGCAGAACATCAACCCCCTCACCATGTGCCTCAACGGGGTCATCGACGCCGCCGTCAATGGGGGGCTCGCACGCTACCAAGAGGCGTTCTTTGTGAAGGACTACATCGTGAATCACCCTGAGGATGGGGAGAAGATCGGACGACTAAGGGAACTCATGTTCGAACAGGCTCACATCCTGGAGTATGGCCTGGCCGTCCACGAGAAGTTTGTTCCTCAGGACATGAGACCTCTACACAAGAAGCTGGTGGACCAGTTTCATGTGATGAAGTCTAGTCTGGGGATCCAGGAGTTTCCAGCATATGTGCGCGCTAGCCCCGTGCACTTCACCAACGGCAGCCCGCGTAGTTCATGCAGGAACTCGGTCCCCAACATCATCAGCCCAGATGGCGCTCGCGTGGTGGCCAGACGCAGTCCCCTCACTTACCCGGCTGTCAACCGCTACTCATCGTCATCGCTGTCATCTCAGGCCTCCAATGAAGTGAGCAACATCACAGGGCAGTCGGAGAGCTCTGATGAAGTCTTCAACATGCAGCCCAGTCCATCTACCTCAAGCCTCAGCTCCAATCATTCTGCCTCTCCCAACGTGACCAGCTCTGCTCCGTCCAGCGCCAGAGGTTCTCCCCAGCTCCAGGACAAACACAAGCATTCCAGAGAGAACTCCTGCCTCTCTTCCAGGGAGAGACCCGTCAGTGCCATCTACCCCAATCCCCTAGACCCTGCAcagAGGGCGACCCCTCATCAAATAGGTGACACCACACTACCCCGAAGTGATCCTAACCTTTCTGCACCAGACAAAGTGAGAACCACCTTCAGTAGCCGGAGTCTAGACAGTGTAAAAGAGGTCAACAACACACAGTTCTCTGACACTGTGGGAAAGTTGCTCTGTCCCCCTGTACCTCCTAGGCCACCATACTCAGGCTCTTCAGCCAAGACTATGAGGTCGCAGTCCCCTCTCCCAACATCCAGATCTCCACAAAAGAGTTCATTGCCGCCCTTCACGCCCTCACCCACTGAGTGCCAGTCGGCTGGACTGGTGTCCAACTCGCCCGTCCTCTCCGGTAGCTACAGCAGCGGCATCTCCTCCATGAGTCGCTGCAGTGTGTCCGAGGCGTCGGGCACCGAGGCAACCACTGGAGACCACCCCGCCCACCAGGGGCCCACCATGCCCAACTCGGTCTCCTCGGGCTCGGACGAGCTCATCCGCCGCGAGAACAAGACGCCGCCGCCCTACAGCGTGTACGAGCGCTCCAACCCTCGTAGGCCGGTTCCCCTGCCCCacagtctctccatccctcccagtGTGGACCCCCCGGCCCTGCCCCCCAAGCCCCACCAGCTACGCACTAGCAGCATGAAGCTGGTCCCAACTTCGGACCCTCGCAGGGCCGACGGGGTGCCCCATGTCCCCAGACCCAGACCTCTCCCCAGGAAGGTCTCCCAGCTATAGGCTGGGTGAGGACCTACAACCCTTGTGGGTTGATGGGTGACACCACTGGCGCGTTTTGCACTTTTTACACTGTCTTCTCTTCAGTTTGGTAATCCCAGGCTCTGCCCAAGACAGACTCAAGACTCGTGAGTCGGTCTCATTGTGAAGATCTTTTTTCGAAAGGGCTTTGCAATGACTGACTTTGTCATTCCGCACTTTTAGCTCCAGTACAGTAGTAGGTTCCACACGGTAAATTGCTGCGTTTATCTGAAGAAAAATGAAGACAACGAATTTAGGTGTCGATTTTTTGATAGATGTAATAGTCccaatatatgtatatattggtTATATATAAGAAGTGTTTTGCCTTAAGTATTGGAAACAGAGTCTTTTATCCATGAGTCTTGCACGTTTTTGAAGTACACTGTACTTTTCTATATAGCTAAAAGGTGCTAGAGGTCTCATGCATATGCATTTCAGTTTATGGTAGTAGCTGAGGGTGTGTTCACATACATCAAAAATGGTACCGGAACAGGAATGAAAGATTTACCTATTTGATAATTTCTTTCATTGTCATGACCATTTGAAAAGTGCTGTGTAGCTAAAATTGATGCCTCGTTTTTATTCTTGGAGAATTGTAGTCGTAACAAGTTACTCAGATATCCACCCCTTTCGTGATATTGAATCACTCAAATCTCTTGACCTTTCTTCAAGCTCTACTCTAAGCCATAAAGAGCTCCTTCCATCTTTGAAATCCACTTTCTTAGACCAATGCACATGTTTCCAAGAATCCATTGTTCTTGCATCTGACATGTGCCACTAAATTGAAGGCTGTTGCTCTAGTAAATTGTGTGTAGCTCTTATTAATTGGAGGCCATTGCTGGAAGAGGGGCCAGAGATGTGGACACACCCTAACACTCCTGCATGGAGTGCAGTATGTATGTGGTGGTGGATCCTTTGGGGTTTACCAAGTATTGTGCCAAAGGAAGATGTGCTCTATGTATGCTGTAACGACAAACTAGAATCCTGAACctggaaactggaaacactccATTGACTAGACCAGCTGAGTTTGTACTAGCCCACAATAAAAACAACAGACTTTGAGACAAATCCAGTTATTAAGATGAAAAGTCATTGTAGGGGGGTATATGAATGACAACTGTTACAAGTAAGGAATGGGGATATGAGATTAGCACAAATGAGTTTGAATCTGCGTTAACAGTGGTTGCATCACCAAGGACTCACTCTACCTCTTGAGTTGTTATCCTGGCGACCACAATGGGCATTTGAAGTGCAGTATGTATGGTGGAAAAGATGCCCGCTATCTGCCACCCAGTAACTGCCGGcaactcgtacacacacacacacacacacacgagagctGCTCTTCTATTTGAGAATCTTTTTAGAACACCATTTTTCAACTAATCATTGTATGGTCACGCTTGTACAGTACAGCCGAGTGAGTTAGAGGTGTTGTCTCCGTTTGACATTCGCGGTGGACAGAGTGTACTGGCATCGAGTCCTCTTCTCCTGTTCTACGGTAATCTAGGGAGTCGTCACGTCAGGTGGTTTCTTGTCAGTGTTTAATGAAGAGAAGACAACACTGTTTTTTGTaataaaaagtttttaaaaatgtgCGTAAATATTGATCACTTAATTCAGTACAACGGTTTTCAGAATTAACCTGGGTATGGTTTGTATGTTTCACTTTTGTATGTTTCATTTCCTTTTTAATTAGTTGTGAATTGTTTGGATCAAATATTCACATTAATCAGTACTTGAGAAATTGTAAATTATATAATGATGAGATTGTTGTAAGTATGCCAAATATACTACCTTTTGtgtattactattattgtaaatATTGTGTTTTTAACAAAGTGTAGCTAATACACATTTACAGCTTTGAATGTTGGAACAGCAAATTATTGTTATAAATGTCAAAAGAATGCTGTTTTAGTGAGTGTAGAAGTCTATTGTAATGCATATCTACACCTACGGTAACACATTTACATGCTCAATAAACTACCCTATGTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976644 lncRNA upstream 17244 30246541 ~ 30246855 (+) True G1725481
TU1976638 lncRNA upstream 37224 30226671 ~ 30226875 (+) True G1725475
TU1976637 lncRNA upstream 37927 30225970 ~ 30226172 (+) True G1725474
TU1976627 lncRNA upstream 60492 30201598 ~ 30203607 (+) True G1725464
TU1976595 lncRNA upstream 82448 30143786 ~ 30181651 (+) True G1725440
TU1977007 lncRNA downstream 988 30411269 ~ 30411616 (+) True G1725817
TU1977344 lncRNA downstream 84844 30495125 ~ 30495592 (+) True G1726139
TU1977346 lncRNA downstream 86796 30497077 ~ 30497309 (+) True G1726141
TU1977429 lncRNA downstream 194425 30604706 ~ 30604907 (+) True G1726221
TU1977441 lncRNA downstream 214499 30624780 ~ 30624980 (+) True G1726232
XM_036957597.1 mRNA upstream 45323 30169479 ~ 30218776 (+) False LOC110501060
XM_036957598.1 mRNA upstream 45323 30169479 ~ 30218776 (+) False LOC110501060
XM_036957599.1 mRNA upstream 45323 30169479 ~ 30218776 (+) True LOC110501060
XM_021577428.2 mRNA upstream 97447 30139073 ~ 30166652 (+) False LOC110500212
XM_021577429.2 mRNA upstream 97447 30139127 ~ 30166652 (+) False LOC110500212
XM_021578435.2 mRNA downstream 134109 30544390 ~ 30545166 (+) True LOC110500929
XM_021577434.2 mRNA downstream 308299 30718580 ~ 30725274 (+) False LOC110500218
XM_021577435.2 mRNA downstream 308315 30718596 ~ 30725274 (+) False LOC110500218
XM_021577437.2 mRNA downstream 308320 30718601 ~ 30725274 (+) True LOC110500218
XM_036957614.1 mRNA downstream 339729 30750010 ~ 30807982 (+) False LOC110500219
TU1976442 other upstream 372142 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 1004170 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 1004170 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 1004234 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 1049816 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 171721 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 195019 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 195019 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 471562 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 730316 31140597 ~ 31141090 (+) True G1726863

Expression Profile