RNA id: XR_005038573.1


Basic Information

Item Value
RNA id XR_005038573.1
length 4267
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110500219
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30750010 ~ 30807982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGGACATTCTGCAAGTGAGTTTTGGCTGCTTCGATTTTTTTGTGGTATTACTTTCAATGTCGGCATTTATTTCTTCACTTTTTTACGAAATGATGGACTGAGTTTTTGacttttgacatttttttttcacTGACAAATTTGGCCAGAATGAATTTTTAAATACATAGGCTTGGTAGCTCTTGGACCAGACTACGGACAATGCATAGGGCTCTCCAGCGGTAAACATTATGGGAGATGTGTGCGATTATGTTTTGAAGGGAGGGGCTTACGCTTTGTAGTAGCCTATTATTGAATACTGTGGAGCAGACCGATCCGAAGGCAGATTCTATCTCTTTACATTGACTGACCTGCTTCGTGGTTGTTTGCTACCCAGGTGAATCAACAATAATTTACTTTGTGAACTCAATAGATTTAAGACCCCCCTCCTACTCAACGTGGAACAGGCCGAGGCTGgagtgactgacagactgactgactggtgctcagattctctctctctccagGGCGTAACCATGGATGATGACTTTGAGCGGCGCCGAGAGCTCAGGAGGCAGAAGAGGGAGGAGATGCGCCTGGAGGCTGAGCGATTGGCCTTTCAGGGTAGtaatgaggatgaggaggaggctgCAAGGGAGCGTAGACGCAGGGCGCGtcaggagaggatgagagggatggGAGGCGAGGAGCCCAGTGACAGCGTGGTGATGACCAACagccatagtgtGACAGAGACGGTGTCTGTGTCCTCCTCCTCTATGACCTCCTCGGGTGGAGGAGACGATGATGAGCAGGCCCTGCTGGAGCGCATGGCCAAACGAGAGGAGCGCAGGCAGAAAAGATTGATGGAAGCTCTGGAGCGAGAGAAGGATCAGAACCCCGGCAGTGACGGTAACCACGGCAGCGGGGAGAATACTGTGGAGGAGAGGTCCGTCGGCCGCAGGGGCCGTTACCAGGACAACGAAGAAGAGGTGGAAGAGCGGAACTGccgaaaggaggaggagggggaggctgcTCCGGAGGAGGAAGAGGCTGAGCAGGGAGAGGAAGAAGCGGAtgaagaggtggtggaggaggagaaaccGAGACAGTCCTATATGAGAGAACAGGAAGATACAGAAGAGCAAGCAGTGGTTTTAAATGAGGTTGAGGAATCAGAGGCAGAGGTTGAAGAAAATGCTGCATTAAGTGATAAGGTAGAGGAAGAAGTAGAGGAACCAGATCAGTTAGAGGTAGAGGGCACAACAGTGACCCTGAACAATGAGACTGAGGAAGACTGTCGGATGTCAACCATCCAAAACGGCTTGGATGGGGTGAATGAAAAGCAGAATGGAGGTCTGCACGAGGAGACTCctcaaaaacacaaaaaaacagaaaggaCACTGAGCCGCGGCAGCGTGCGCTCCCCGGCGGCGGGGGCGGAGGAGCAGGACGACACGGCGCCCCTGGAGGCGGAGCTTAAGCTGGAGGAGCTGAAGCGCCGCCGTGACGATGCGGAGAGCGAGGAGTTCGAGAGGATGAGACGGAAGCAGCAGGAGGCTGAGCAGGAGCTGGAGGAGctgaagaagaagagggaggagaggaggaagatcatagaagaggaggagagacagaagaaaCAGGAGGAGGCCGAgaagaaggacagagaggaggaggagaagaggaggatgaaggaaGAGATAGAAAGGAGAAGGGCGGAGGCGGCCGAGAAGAGACAGCAGATGGGGGTGGAGACTGTCGACGCAGAGGCCAAACCCTTCAAATGCTTCAGTCCCAGAGGATCCTCCCTCAAGATTGGTGAAAGGGCAGAGTTTCTGAGCAAGTCGGCACAGAAAAGCACGGTGAAGTCAACTCACTCTCCTGTCGTCTCTAAGATTGACAACAGACTGGAGCAGTACACCTCTGTTGCCCAGAACAAGGATATGCGGTCCCCACGCTCCGGTGCCGTGGACCTGCCCATGGTGACAGATGGGATACGCAACATTAAGAGCATGTGGGAGAAAGGCAGCGTGTTCAACTCGCCCGGGGGCGGCGGGGGCACGTACAAGGAAGCAGCTGGGATGAAGATAGGTGTGGCGGGCCGCATCAACGACTGGCTGAATAAAACCCCCGAGAGCAAAACGCCAGGAGGAAGGCCCGCGgacCTAAAGCCAGGAGATGTGACCAACAAGAGAAGTCTGTGGGAAAACAAGGGCTCCTCCCCAGCCAAGAGCTCTGAAGAAGAGCTCTCTTAGCTAGTTGACTTCACCGTTAACTAGTCTGGAAACCCTGGAGAGGTGACTGGCAGAGGGGAGAATAAATCTGTTGCCAACGGTATGGGACACGAATGATACAACGAGCTTCTTCTGATGGCTGGTGGGGACCAAGACAATCCAAGACTCTTCCTTTTCTATGTATTATACCAAAACAAATATGACCACCACCCTGAGGGAACCCaaggaatggagagaaacaggagattCTATTTAATAAGCACTGTACTGAAACGAACAGCCACCAACCATCTCGTCACATGACAGTGTAGTGCCTTTGCACAACGACTTACTATGACTTACtttcacaacaaacaaacaaaataatatgCTGTGAAATTTGGATGTTTTTATGATATGGTCATTTGTTTTATATGTGATAAGCAAAAACTTACAGAagagaaaaaaatgaattgaaaTTAGATATATTTCCCATGCGCTCTTCAGTACATGTGTAGTTTTGATATAGTAGAGAAATGTTTTTATGTGAGGTGTCCAGTTCCACAATCATATCCGTGTTCCGAAGAGAGACGTCTACCACCAATGCTCTGTCCATGTCGTCCATCTCACTTCTTTTTCAAATTTATATTTAAAGCAAAGCTTCACACACGGCTATTTTATTCATGTTCACCAGTTCAGGAGAGAGATTATACGGACTCCGTAGAGTTGgcttatttcacctttttttttgtcttacCAATTAGTGCAACAATGGTCTGAGTTAATATGTGTTAGCACATAAGTACACGTCGTTATGAATATTATACCGTATCTTCTATTACAGCTTTATACTCAAGATTTGTTTCGCTTTTGTACTCTAAAATTGAGTGACTACCAACCGACAAGAGGCAATGAAAGGCAGTGCAAGCAACTAAAGGAAAGTTGTATATTAAAACGGCTATTATAACGTTTATTATCCTAGTTTCAATTTatttatgtgttttttttaacgTGTTTTGTCATCGGCTGTCTTTGTAGCTTTTGTACCTGCTGTTTGAATCTCTAAATTCACTTTGTTAAACTTTCAAGCAACCCATAATTCAGCAGGTGTAGATAAGAGTTACATCCTCATCGTAAGGACTCTCTGACCCACAACATTCCACACCACTAAGCACGCCGCCGGGCTTATTCACATGCATGCTCCAATGGCTTCTATTCAGGAGGTTAAGGACCTCAGCTTTGTCAGTGAGTTTGTCTGAATATGGCAGGCCAGATACACATTTATATACTATGCCTGTACCATGAGACGGCGTTGGTTTAAGCCGTATGTCGCCTTGCCATTTAAGCCCAAATCCGATGTACTAACTATAGGACTCTAAAAGAAGGGAAAGTGCACATTTCGATATTGACAACGACAGAGGATTGAGTCAGTCAAAAGAAGACAGATTTTGACTCCAGCCAACAATTGCGCTCGACGCTTGTTCTGGGTTTGAGTTTTCCTAAAAGTTCCGTAGTGGTATGTAAGGTCGTGTTTACAGCACAAATCCTTTACATGCAACGGTCTCAAGGCCTTGTTGCGTGCACCGAATAAACTGTACCTTGCACGCTGCCAACTCAGTATGACTTccgctgtttttttttgttttttttaccgtTTCATTATCGATGTTCTATGTTTCatgtttcattcattcattttgcATGACGTGCTTTGATAATATGGGTATTATATAGAGGTTAGCAGGGGCATTGTAAGATTGTTCTGTGTAAACCTTGACAATCACATTCCATGACTCCTTAGAAATACGAGCAATGGAGTCTGACCAAAATATCTAACATTATTTTACATTgctgttatttcatattttggtCATTTGCTTTTTTTTGTccgtttttaaattgtattttattttatttcaaacaCCCTCATTTATTGTGTAGAGTTAACTATGCAAGGCACTCTGTCGTTTCAGATACAACTTTGTTATAGTACTGGGTAGTTTCCTACAGAATGAATGTTATGAAATATTTGTACCGTTGACTCAACAACAGCAATAAAGAGATATAAATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977575 lncRNA upstream 78472 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 83915 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 97206 30652450 ~ 30652811 (+) True G1726330
TU1977531 lncRNA upstream 113438 30636366 ~ 30636579 (+) True G1726311
TU1977530 lncRNA upstream 114597 30635214 ~ 30635420 (+) True G1726310
TU1977775 lncRNA downstream 54606 30862588 ~ 30862794 (+) True G1726524
TU1977805 lncRNA downstream 135884 30943866 ~ 30944191 (+) True G1726553
TU1977822 lncRNA downstream 193238 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 201598 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 212988 31020970 ~ 31021218 (+) True G1726587
XM_021577434.2 mRNA upstream 24743 30718580 ~ 30725274 (+) False LOC110500218
XM_021577435.2 mRNA upstream 24743 30718596 ~ 30725274 (+) False LOC110500218
XM_021577437.2 mRNA upstream 24743 30718601 ~ 30725274 (+) True LOC110500218
XM_021578435.2 mRNA upstream 204851 30544390 ~ 30545166 (+) True LOC110500929
XM_036957604.1 mRNA upstream 339736 30264099 ~ 30410281 (+) True LOC110500216
XM_021577459.2 mRNA downstream 179 30808161 ~ 30821293 (+) False LOC110500220
XM_021577449.2 mRNA downstream 256 30808238 ~ 30821293 (+) False LOC110500220
XM_021577450.2 mRNA downstream 256 30808238 ~ 30821293 (+) False LOC110500220
XM_021577453.2 mRNA downstream 256 30808238 ~ 30821293 (+) False LOC110500220
XM_021577456.2 mRNA downstream 256 30808238 ~ 30821293 (+) False LOC110500220
TU1977430 other upstream 138656 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 138656 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 159381 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 858060 29890286 ~ 29891957 (+) True G1725312
TU1975333 other upstream 1490088 29258661 ~ 29259929 (+) True G1724262
TU1977723 other downstream 73861 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 332615 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 641414 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 700074 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 756153 31564135 ~ 31564594 (+) True G1727220

Expression Profile