RNA id: XM_021577449.2


Basic Information

Item Value
RNA id XM_021577449.2
length 1158
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110500220
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30808161 ~ 30821295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATATAAGAGGTGGTCACATGGGTGGCAGGGCTGCATTATGTGAGCATTAGAGTCTCATTGAAGTTGTCTGTTTCTGGATCTGAAAGAATAAGACAGGTCCATTTCTCTTTCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGCAGAAACCCCCACAGAGGAAGTCGAGGTTGAAGTCCCGGCAGAGGAAGATGCTGCTCCTGCAGAGGAAGAgccagaaccagagccagagccagacgTAGAAGAGCCCACTGCAGTAGAAGCCAGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATCgagaaGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagaggcaggccCGTCTAGCCgaagagaaagagaggagggagcaagaTGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCTCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAGGGAGCCAAGAAGCAGactgagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATCGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGCTGGAGGCGGAGAAGTTCGACCTCAGCGAGAGGCTGAAGAAGCAGAAATACGACATGAATGTTCTCCAGACCCGAATCAATGAGCAGCAGAAGTTTGCCAAAGGCAGAGGCAAGGCCAAGGCGGTCAGAAGATAATGAGACCTGGCAGGATGAAGTCTTCAGGACTGAGACGCCAGACGATGACGGaggattgttttgttgttgttcttgttATCAGTGTACATGCAAATTACTATGGAAATGTAATGTTATCACGGTCACTGTTTGCATGAAGCTAGAAACAATAAAGAGATGTTTGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977575 lncRNA upstream 136693 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 142136 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 155427 30652450 ~ 30652811 (+) True G1726330
TU1977531 lncRNA upstream 171659 30636366 ~ 30636579 (+) True G1726311
TU1977530 lncRNA upstream 172818 30635214 ~ 30635420 (+) True G1726310
TU1977775 lncRNA downstream 41295 30862588 ~ 30862794 (+) True G1726524
TU1977805 lncRNA downstream 122573 30943866 ~ 30944191 (+) True G1726553
TU1977822 lncRNA downstream 179927 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 188287 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 199677 31020970 ~ 31021218 (+) True G1726587
XM_036957612.1 mRNA upstream 256 30750018 ~ 30807982 (+) False LOC110500219
XM_036957620.1 mRNA downstream 20232 30841525 ~ 30851119 (+) False LOC110500223
XM_036957621.1 mRNA downstream 20249 30841542 ~ 30851119 (+) True LOC110500223
XM_021578436.2 mRNA downstream 49980 30871273 ~ 30877399 (+) True LOC110500930
XM_021577467.2 mRNA downstream 60483 30881776 ~ 30889293 (+) False LOC110500226
XM_021577469.2 mRNA downstream 68079 30889372 ~ 30895129 (+) False LOC110500227
TU1977430 other upstream 196877 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 196877 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 217602 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 916281 29890286 ~ 29891957 (+) True G1725312
TU1975333 other upstream 1548309 29258661 ~ 29259929 (+) True G1724262
TU1977723 other downstream 60550 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 319304 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 628103 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 686763 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 742842 31564135 ~ 31564594 (+) True G1727220

Expression Profile