RNA id: XM_021577452.2



Basic Information


Item Value
RNA id XM_021577452.2
length 1150
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110500220
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30808161 ~ 30821295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATATAAGAGGTGGTCACATGGGTGGCAGGGCTGCATTATGTGAGCATTAGAGTCTCATTGAAGTTGTCTGTTTCTGGATCTGAAAGAATAAGACAGGTCCATTTCTCTTTCCTGTGGGGTTTGGAGGTAATCCAATCTAAACATGGCAGATGAAGAAAATGAGGAGGAAGTCGAGGTTGAAGTCCCGGCAGAGGAAGATGCTGCTCCTGCAGAGGAAGAgccagaaccagagccagagccagacgTAGAAGAGCCCACTGCAGTAGAAGAAACGCTTGCAGAAGAAGCCAGTGGAGAGACTCAAGATTCCAAAGCCAAACCAAAAAGTTTTATGCCAAATGTTGCCCCTCCAAAGCTACCAGAGGGAGATGGTAAAGTCGATTTTGACGACCTGCATAGGAAGCGTCAAGAGAAGGACATGGCTGAGCTGACCTCTCTGATTGAGTCTCACTTTGTCCAGAGGAAGAAAGATGAAGATGAGCTCATCAGTCTCGTCAACAGGATCgagaaGCGTCGTACCGAGAGGGCAGAGCAGCAGAGGATTCGTGctgagcaagagaaagagaggcaggccCGTCTAGCCgaagagaaagagaggagggagcaagaTGAACAGCGTAGGAAGCACGATGATGACGCTAAGAAGAAGAAGGCTCTCACTACCATGACTCACACGTACGGTGGCATCCAACAGAAGCAAGAGGGCAAGAAGGGAGCCAAGAAGCAGactgagagagaaaagaagaagaagattCTGGCTGACAGAAGGAAGGCTCTGATCATCGACCATCTCAACGAGGACAAACTCAAGGAGAAGGCCAATGAGCTGTGGCAGTGGATGATGGAGCTGGAGGCGGAGAAGTTCGACCTCAGCGAGAGGCTGAAGAAGCAGAAATACGACATCAATCAGCTTCTGGCCCGTGTCCAGGACCACCAGAGTGCCAAAGGCAGAGGCAAGGCCAAGGCGGTCAGAAGATAATGAGACCTGGCAGGATGAAGTCTTCAGGACTGAGACGCCAGACGATGACGGaggattgttttgttgttgttcttgttATCAGTGTACATGCAAATTACTATGGAAATGTAATGTTATCACGGTCACTGTTTGCATGAAGCTAGAAACAATAAAGAGATGTTTGCTTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1977575 lncRNA upstream 136694 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 142137 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 155428 30652450 ~ 30652811 (+) True G1726330
TU1977531 lncRNA upstream 171660 30636366 ~ 30636579 (+) True G1726311
TU1977530 lncRNA upstream 172819 30635214 ~ 30635420 (+) True G1726310
TU1977775 lncRNA downstream 41293 30862588 ~ 30862794 (+) True G1726524
TU1977805 lncRNA downstream 122571 30943866 ~ 30944191 (+) True G1726553
TU1977822 lncRNA downstream 179925 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 188285 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 199675 31020970 ~ 31021218 (+) True G1726587
XM_036957612.1 mRNA upstream 257 30750018 ~ 30807982 (+) False LOC110500219
XM_036957620.1 mRNA downstream 20230 30841525 ~ 30851119 (+) False LOC110500223
XM_036957621.1 mRNA downstream 20247 30841542 ~ 30851119 (+) True LOC110500223
XM_021578436.2 mRNA downstream 49978 30871273 ~ 30877399 (+) True LOC110500930
XM_021577467.2 mRNA downstream 60481 30881776 ~ 30889293 (+) False LOC110500226
XM_021577469.2 mRNA downstream 68077 30889372 ~ 30895129 (+) False LOC110500227
TU1977430 other upstream 196878 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 196878 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 217603 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 916282 29890286 ~ 29891957 (+) True G1725312
TU1975333 other upstream 1548310 29258661 ~ 29259929 (+) True G1724262
TU1977723 other downstream 60548 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 319302 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 628101 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 686761 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 742840 31564135 ~ 31564594 (+) True G1727220

Expression Profile