RNA id: XM_036957627.1


Basic Information

Item Value
RNA id XM_036957627.1
length 4424
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110500231
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30896004 ~ 30940496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATGCCTTGCTCTTAATCACTACTCTGCCACTCACAATCCGTCGCCTAGTTATGTGTTGGGAAAAGGACTTTGCGAAATAGCAACGATGTCAGTCCAGGTTTTGGCAGCGGAAATGGCCGAGGTCGAATTAAAAGACGTACCCAGCAAAGAATTAACACCCGAATCGCATCTGACAACAAAGGCAGACGACAAAGAGATAGTTGAAAGCGAACCAAAAGCTGTCGCTACTTCGGCTTCTACCCCAACGATGGAGCCTATCGTGAAAACCGGGGACCCGAGCCCTGGTTTTCTTATCCCGAACACTAAGATGCCGCAGGCGTCCGCGATGAAACGGACAGATCCCCAACAAAACGGTGGCGAAGCTTTCGTAAATCGCGACGGTACGGTGGCAGAGGCCCCAAGATTGAAAAAGATCCAGTTTGCGGACCAAAAACAAGAGTTCAACAAACGTCCCACCAAGATCGGCCGCCGCTCTCTGTCCCGATCCATCTCCCAGTCCTCCACAGACAGCTACGGCTCAGCTGCGTCGTACACAGACAGCTCTGATGACGAGACTTCTCCTCGGGACAAGCAGCAGAAGAACTCCAAGGGCAACGGAGACTTCTGCATCAAGAACATCAAGCAGGCCGACTTCGGACGCAGGGAGATCGAGATCGCGGAGCAAGAGATGCCAGCCCTCATGGCCCTGAGGAAGAGAGCCCAGGGAGAGAAGCCGCTGGCTGGGGCCAAAGTAGTGGGCTGCACCCACATCACAGCTCAGACAGCcGTGTTGATGGAGACGCTGTCTGCCCTGGGGGCTCAGTGCAGGTGGGCTGCCTGTAACATCTACTCCACTCAGAATGAGGTGGCAGCTGCTCTGGCCGAGGGAGGGTTCTCTGTGTTCGCGTGGAAGGGCGAGTCGGAGGATGACTTCTGGTGGTGCATCGACCGCTGCGTCAACCTAGAGGGCTGGCAACCTAACATGATCCTAGATGACGGCGGAGACCTGACCCACTGGATCTATAAGAAATACCCCAACATGTTCAAGAAGATCAAGGGAATCGTGGAGGAGAGCGTCACTGGAGTACACCGGTTGTACCAGCTGTCCAAGGCGGGGAAGCTGTGTGTCCCGGCCATGAATGTCAACGACTCTGTGACCAAGCAGAAGTTTGACAACCTCTACTGCTGCAGGGAGTCCATCCTGGACGGTCTGAAGAGGACCACTGATGTAATGTTTGGGGGGAAACAGGTGGTTGTGTGTGGATATGGAGAGGTGGGGAAGGGTTGCTGTGCTGCTCTCAAGGCCATGGGCTCCATCGTGTACGTCACAGAGATCGACCCCATCTGTGCCTTGCAGGCCTGCATGGATGGCTTCAGACTGGTGAAGCTGAATGAGGTGATCAGACAAGTGGACATTGTCATCACTTGCACAGGTAATAAGAACGTGGTGGTGAGAGAATACTTGGACCGTATGAAGAACGGCTGTATTGTCTGTAACATGGGACACTCAAACACCGAGATCGACGTGGCGAGCCTGCGGACCCCGGAGCTAACCTGGGAGAGAGTGAGGTCACAGGTGGACCACGTCATCTGGCCCGACGGCAAGCGCATAGTGCTGCTGGCTGAGGGTCGTCTGCTGAACCTAAGCTGCTCTACGGTCCCCACCTTTGTCCTGTCCATCACCGCCACCACTCAGGCCCTGGCTCTGATAGAGCTGTACAACGCCCCGGAGGGACGCTACAAACAGGATGTCTACCTGCTGCCCAAGAAGATGGATGAGTATGTGGCCAGTCTTCACCTGCCTACGTTCGATGCCCACCTCACTGAGCTGAGTGACGAGCAGGCCAAGTACCTGGGCTTGAACAAGAACGGGCCCTTCAAGCCAAACTACTACAGGTATTAAACCAACTCTGAAATGAAGAAAATACCGAGGCTCCAAAAATCGTACAGAACccagaagaaaggagagaggaggacggaATAGTCACACACCTGCTTTTTACTAGAGGGGAGGAGCTGTGTGCTAATTGCTCAGAGTGGAGGGCGTGGCTTACCTGCGCTTTGgcagtgttttatttatttccgCTAGAATAATGTAACTCTAACCTTTTTTTTGAGCTGCTCCTGCCATCTTGCGCTCCTTAGCAAGCGTCTCCTGGAGATTTCGTCTTCTCTTAGCTACTTGTCTGTCGAGTCAGTCGTACGTAAACTCCGTTGCGAGATCTTTTTATTGTTCGTTTAAAAACTAAAGATGGGAAAAACTATTAATGAAGAAAAACAAATGTACAAACAAATCTCTGTGTGAATGAAAGATGACCTCTGAAGATTTAGTGATGGACGTGTGGTTCATGTCCTGTTGTCCGTCTTTTCCTACTcttgatttttgttttgttttcaaagATACATTGAAAGGGATTAGATGAAGAGGGGGGAGGTCATTGAGTCCAATCATATCCTGTCTTTGCTCATTTGATTCAGATTTATTCTCTGTCCTTGTTTTTAAGTACGTTTTAATGCGTTGGTTCTCCTATTCCCCCAATCAAACTGGACAGTGACAGGTGTGGGGGTCGGGGTCTTTCCCTGTGATTGGTTGGGACCTCTCTCCCGCACCTATCACTCAAACACAGTGAATCCATCTCAGCTCCCTGTACCACAGCCTCTCAATAATGAACTATGTTCTTCAGCTCCCAAACTGCTCACATGATGCCAGTGTTGAAGTTTTATGAGAAGTATTTTGCCGACCAGAGTTTATGACATCCATCCACAATGTCCGGAGCTAGATTCTCCTTTCAAagcattatactgtattataaactgggtagttcgagccctgaatgctgaaagccgtggtatatcagactgtataccaccatgacaaaacatttatttttactgttctaattatgttggtaaccagtttataatagcaataaggcacctcaggggtttgtggtatattggaaatataccacggctaagggctgtgtccaggcactctgcgttgcgtcgtacataagaacagcccttagcacagggtatattggccatataccacaaagccCCTCgtaccttattgcttaattagagGCATGACAGGTATGGGAGATCATTACAAGGGGATATATTTAGATATTTATGTAGAAATGTCGATTTTTCTATCTTTCCTCCACCCATCTAATATCTTACCTTTGAAATTAAAAATCTGTCTCGCTATAAAGATAAGCAATTAAATGTTATGATAAATGTTGGGTATGatttattattcttttttaaacTGTGACACAGAGACTATTTCAGTGAGATACCAAATGTACAGCAAGGCTGGTAGTAGTTTCTTTGGCCAGGTCCTCAATAGTAAGCTGCTGTACGCAAAACCTGTACAGTAATTACAGCGCTAAAACCAATTAGCCATTGCCAGGCGTTAGTTGTGATTTTAACTGCAGTGAGGCTATAGCTTTATGCCTGGATCATTACATATGCTTGTAATTAGTTGGGGACCTTACATTTCACACGTTCCAAAATGTTTCACCACTTCAGACATCAGTTTACCTCATTGTTCCAATTTATTATGCATTTATGATAAAAGGTCATAGTCACCTTTTATAAATGTCCAAGATTTGGTGTCTTCGTTAGTTTGAGTTTTTCTGTTGAGGGCCAAACTCCTCTGGTACGATTATTAGTCCGGCTTAATTTCCTCCGCGTTTTTAGATTCAACTTTGTTAGAATCCCAGCTGTTAGGGTTTTCTCCTGAACCAAAAGCCCGTTACTACAAGCCAGCTGGGAGGAGCCAGCGGGGAGGAACCAGCTTTTCttctcattttttaaatgtattttttttacatcgtATAGAATGGACTTAAATCCTTGAGAACATACATATTGCTCCCATGTTAATTATGCCCATACTATACATTCTAAAATGCCACTGTGTTCATGTCATACTCGTGAGCTACCGTTTGTGCATTTATGCCCCCCAGCCTCCATAATAACCATCTTCCAAGTCGGAGGCCCTGTCTGTGTGACCATCCATACTGCCCATATTTCTGTTTGTCTGACTTTTTAGAACATTATCCTTGTGCTGATTATCTCATCTGTTAGAGtggtttattgtgtgtgtgtgttagggtcgTGTGTAGTAGGACATGGTTGCTTCGATACAGTTGTCTCAGGATCATAGCCTGTGCGTTTCCCTGGGGTGAAAGAGCATTAGTCGGTCCAATAGCTGCGTCACGTGGGCAGGGTTAACGCCAGCATCTTGTATGGTTAACTCAAAAGTATAGGAATTCCAGCATATCAACTCTTGTATTTATTGTTGTAAATCCACAGTCAGTACAAATGGaacattttttttctcaaattTTTAAGTTGTTTAAACAATGTTTAAATATTGCAAGTGATAATGATAGATGAGCAATAATAAATCTAATCTTAAAGAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977775 lncRNA upstream 33211 30862588 ~ 30862794 (+) True G1726524
TU1977575 lncRNA upstream 224460 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 229903 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 243194 30652450 ~ 30652811 (+) True G1726330
TU1977531 lncRNA upstream 259426 30636366 ~ 30636579 (+) True G1726311
TU1977805 lncRNA downstream 3370 30943866 ~ 30944191 (+) True G1726553
TU1977822 lncRNA downstream 60724 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 69084 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 80474 31020970 ~ 31021218 (+) True G1726587
TU1977846 lncRNA downstream 84705 31025201 ~ 31025513 (+) True G1726589
XM_021577469.2 mRNA upstream 876 30889372 ~ 30895129 (+) False LOC110500227
XM_021577470.2 mRNA upstream 876 30889399 ~ 30895129 (+) False LOC110500227
XM_036957630.1 mRNA upstream 876 30889499 ~ 30895129 (+) True LOC110500227
XM_021577467.2 mRNA upstream 6712 30881776 ~ 30889293 (+) False LOC110500226
XM_021578436.2 mRNA upstream 18606 30871273 ~ 30877399 (+) True LOC110500930
XM_021577473.2 mRNA downstream 2113 30942609 ~ 30982749 (+) False LOC110500229
XM_036957626.1 mRNA downstream 2436 30942932 ~ 30982749 (+) False LOC110500229
XM_021577472.2 mRNA downstream 8561 30949057 ~ 30982749 (+) False LOC110500229
XM_021577474.2 mRNA downstream 8565 30949061 ~ 30982749 (+) True LOC110500229
LOC110500233 mRNA downstream 49709 30990205 ~ 30997950 (+) True LOC110500233
TU1977723 other upstream 12392 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 284644 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 284644 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 305369 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 1004048 29890286 ~ 29891957 (+) True G1725312
TU1978141 other downstream 200101 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 508900 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 567560 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 623639 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 1174240 32114736 ~ 32134999 (+) False LOC110501063

Expression Profile