RNA id: XM_021577473.2


Basic Information

Item Value
RNA id XM_021577473.2
length 7996
RNA type mRNA
GC content 0.44
exon number 22
gene id LOC110500229
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30942609 ~ 30982749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGTCCAGTCAACCAATCACACTAACGGGGACGGGTTTCCTGAACTTGGAATACTGAAATCTGTTACAGTTTGTCAGGCTCGAACCTTACCGGAATGCACAAGCTGCAGAAAAAGTGAACGAACCAACACAGAAAGATGCAGGCAGACGAAATGGAGAGCTCCATGGAGTCCCCTAACCTGGAGTTTGAGTATGGGGACACAGACAGCCTGACCACTGAACTCTCAGAGATATACAGTTACACGGAGGAGCCCGAGTTCGCCCTCAACAGGGACTACTTTGAGGAGGATTTCAGGAGCCATGTGCGGGGGAGGAGGTGGATTGAGCTGGGTCAGGAGCAGCAGAAGTCCTATGTGATGAGACTACTAGATGCTCTGGAGGTCACTGACCGGGACAAGAGGCTGAAGGTGGCCCGGGCCATCCTCTACCTGGCACAGGGGGTGTTTGACGAGTGTGACACGGACGCGGACGTGATCCACTGGTCTCGCCACAACGTGTTCCTGCTGTATGACATGGGCATCTTCACCGCTCTCCTGGAGCTGCTGAGCATGGAGATGGATAACAACCAAGCCTGCAGCAGCGCAGTGAGGAAACCTGCTATCTCTCTGGCGGACAGCACAGAACTCAGGGTCTTGCTAAGCATCATGTACCTGATGGTGGAGACCATCCGTCTGCAGACAGAGGATGACAGGCCAGAGTGGAGAACTGCCAGAGAGGCCTTCAAGACTGaactggGTTCTCCTCTGTACAACGGAGAGCCATTTGCCCTGCTGCTCTTCACCATGGTGACCAAGTTCTGCAGTATGAACGCTCCACACTTTCCCATAAAGAAGGTCCTGCTGCTGCTCTGGAAGACCATCCTGTTCACCATGGGGGGCTTTGAGGAGCTCCAGGAGATGAAGGTTCgaggcagagagaggctgagCCTGCCCCCCCTGCCTGAGGACAGCATCAAGGTGGTCCGGAGCATGAGGGCAGCCTCTCCTCCAGCCTCGGCAATGGAGCTCATCGAGCAGCAACAGCAGGCCAAGAGAGGACGCCGCAGCCGCAGGAGTGCCTTTGTTGATAGCTTGGAAGGAGACAGTCCCTTTCCCAAGAAGCAGCCCCTGGTAAAGCAGGACAGCCTAGACACGTACAACGAGCGAGACCCCTTTAAGAACGACGACGCACGAGACGAGGAGGAGGACGGCGAGGAAGCCGACAGTGGCATCGAGGGCGAGGTGGACCCCCTGGACAGTGATGTCATCATCCAGCCACCACCCCCACCGCCCCCGCTCAGACCCCCCACTGAGAGAGCGTCCCTACCCAAGGGTCTGCCCTGGGCCCCCAAAGTCAGagagaaagacatcgaGCACTTCTTGGAAACCAGCAGGAACAAGTTCATCGGCTTCACTCTGGGAAATGACACAGAGACACTAGTCGGTCTTCCTAGACCCATACACGAGAGTGTGAAGACCCTTAAACAGCACAAATATGTCTCTATAGCCGAGATGCAGATCAAGAGGGAAGAGGAGCTTCAACAGTGCCCCATGACCCTGGGAGAAGAGGATGTGGATGAGACACCCACAGAGATCGTGTATCTGGGAATGCTTCCTAACCTGTCTCAGTATGTGATTGCCCTTCTGAAGCTGCTGCTGGCTGCAGCACCTACCTCCAAGGCCAAGACGGACTCCATCAATATACTGGCTGATGTGCTGCCAGAGGAGATGCCAATCACGGTCCTCCAGAGCATGAAGCTGGGTATTGACGTGAACAGACACAAGGAGATCATTGTCAAGGCCATCTCTGCACTTCTGCTCCTGCTGCTCAAGCACCTGAAACTCAATCACATCTACCAATTTGAGATTGTCTCTCAACACCTGGTGTTTGCTAACTGCATCCCACTCATCCTCAAGTTCTTCAACCAGAACATCCTGTCTTACATCAGTGCCAAAAACAGTATATGTGTGCTGGACTTCCCTCACTGTGTGGTCCACGAGATGCCTGAGCTCACGGCTGAGAGCTTGGAAGCTGGAGACCGTAATCAGTTCTGCTGGCGTAATCTCTTCTCCTGCATCAACCTGCTGAGGATCCTCAACAAGCTGACTAAGTGGAAACACTCCAGGACCATGatGCTGGTGGTGTTCAAGTCTGCTCCCATCCTGAAGAGGGCGCTGAAGGTCAAACAGGCCATGATGCAGCTGTATGTCCTCAAGCTGCTCAAGATCCAGACCAAGTACCTGGGCCGCCAGTGGAGGAAGAGCAACATGAAGACCATGTCAGCCATCTACCAGAAAGTACGACACAGGCTCAATGACGACTGGGCCTATGGCAACGATATCGACGCGCGGCCGTGGGACTTCCAGGCGGAGGAGTGCGCCCTGAGGGAGAGCATCGAGAAGTTCAACAGCCGTCGCTACGACAAGAACCAGAACGGCGAGTTCGCCCCGGTGGACAACTGCCTGCAAAGCGTTCTGGGCCAGCGTGTTGAGCTGCCGGAGGACTTCCACTACAGCTATGAAAtgtggttggagagagaggtgttTTCACAGCCTATCCAATGGGAGGGTCTACTACAACAGGCCCGGTGAAGGGGGAGGACACGCATACCAGGGACACAAGCCTACGACTACTGTGATCTTCATGTAAATATGTGGCAGAAATAGAACATCTGTTTTGTAATCACCTGTATCCATGCAGAAATTGTACAGTAACGGTATAGACAGTAATAATGATGTCATGGCAACTTGGCAGGAACAGTCTCTTACAGTACAACTATGTGGAATACTGTGATTATTATGTTAGTCACGACAACCAATCCAACCACTAtgtccactataactataaccaccaGTACATTTTTCCTCACTCAATTTGGTTCGCCTCTGTGCTTTGTGGAATAATGAATTTTATATCCATGGCATGtcctcttttttttatttatgaaGATGTACATTTGAAGTACTGGCACTATGTTTAGTTTATGTTGTAATGTTTTACATGTGTATTTATTCATGATCGCAGCCATTATGTTTCCGTATGTAAATCTCATAGCTGCAGATGATATTGTGCTTGATATTTCTAGAAAGAAAATGCCTATTTGTAAAGAAAGTACTGTGTATTAACAGGCGAAtgattaagtaccttactgtgattgttttcaattaaaatagcAAAGGggaatttctcaagcaagaatttagccaGGACTGTCTGGAGTTGGTCTGAGTAGAGAGGGGGAAAATTAGCTGTTATTGGTAGACAGGTTTTGAACTAATTTACCCCGCCTGTGGATGTCACCAGGCAGACCAAATCTCCATCCTACCAAAACAGGAAGAAACAGCTGTTACAtttaaagggcattatcataattttcacaatttcacagtattattccaacctccgtgtggaaatgtatataaaacacaggaaaatcacgtttttgGGAGAATTTAACATTTCCCCTTTCTAGATGAATAGTATTTTAATTTGTGTAATCACAAACAGATATTCCTGTAAGTCAttgatcatcaactagattcagctgcgggatgatttttttaaaacttcttcagcggatggtcagggtgccgaaacataattacaaatcatttgtagacataaaaaaaaacacagtatTTTACAAAGATAATAAATGTGCTTACATTTGTACAAGATcatatctctctattatgcgtgggaatacttggcaaacagatttccaaaatgaagTCACTTGGacctgatttcctggtgtttttcaTGTCTAACAATGAGAAAAAATAAGAACTTGGAGGGGCAAATAAAATCTCCCGCTGTCCAAATTCAGCCCACGGCCAGCCAGTGGGGGAACCCTGCTGTTAGTAGTATGTGGTAGTTCATTTATGTTTATAAAGGTCTGTGAAGCCTTATGCCAGATAGAGAGAAAATAAAGGATAAGGACACAGGCAAACCTTTTGAGGCTAAGCTGAAGGGTTTGACCAGGGATTTGGAGGCTTGAGGGGGTTCATCGGCCCAGCGTGGGGAGGCCGTCTCTGGGTAAATCGATGGCAGTGTCCCTGACTCCCTCTGGGACCCTGAGAAGTCCTGTGTGCTTCACTCTCTGTCCTCCCAAATGTGTCATGGCTGTCTTGGTTTAGCCCTCAGTCCACCTCCCAACTTCCACAGAGCAGCACGGCAGCCAACCTTGACTGAAGCACAACGACTGAAGGGCTACAAGTGTCCTTGTGAGGCTATGCTCTCCCTAGTTGTCACACAATGTTGTTGATTTTTATGAGATCTGTTGTCTTGTCAATTTATTTCACTGTGAAGTAGAACTACCCTGGGCTGTAAAGGCCAGTACATATTCTCTGGTGAGTGTTCTGTGACTTTCTCTCAAGAATATGGAACATTCTCTGATGACACAAGCACATAAGACATGATCATGGTCACTTTTTCCTACTATCTAGTGTAgactttagagagagagagagaatttgtgTAGGCGGTGGAGATGTACTTGGTTGTATTATCTTTGTATTGAACAATGATTGTGTAACTGAATTGTGCTTCTTCGAGGAAACTATGTCCGCATGGCTGCAGTTTTATCTTTCTGTTTGAATGTGTCCTATTTAAAAGTGTATTCTGAAATTTGATACAATATTTCAAAATGTGACTTGTTAAAATTCTGTTTTTAGAACACATATTCAAAATGTACTCACTCATCATTTGGTATATGTAGGGTGTTTTGGTAAATGCACCTACATTATTGTCTATTGAGTCAGCACAATCTGGAGTATGTCTCAAACGTCATGTCAAGTTTGTCCCACACAGGTGAAGAGAAAGTCATTTGACCTTTTTAGTTCTGGGTTTTCTTGaatgcaaaatatatattttttaaataactgcTTATCTTGAGGTTCTCAGGTTTTCAGTATGTACAACCTGAACTTTAGAATTATTGTACAACTATGGCTTCCTCCTCACTACCTATACAGTATGTAAGTATGAATGCAACTGGTGGACTTGcaataacatggtaataacaaTCTAAGCATTGAAAAGTAGTCTACACTTGGATTGGCACAAACAGTAACCCAACACAATGTTGATAATTTCTTTACACTTTTTTTCAGAAACCCTAACCTCATGTGACAAAGTAATGAGTGGCAGTTTTGATTAGGAATGAATGCTTTACTCAGAGCACCTCTCATTCAAAACAACGCAATATCTCTTTTTCTACCTGATATTGTACAATCACTGGAAATACTTTACAGtacatgtatgtatgcatgtttgTTGAGTTCTGGCACAGTTGGAGGAAGTGTTCCTAGATGTGTTTTGCAGTGTTTGGATATTTCTATTTGTGTTTTTGTCATACTTTTATAGTTGACTGTAATAATAATATTGATTTTGTTCAGGGGTATGTACAATCACTGTCCTGTACAGAGGCATTATTCTGTTGAAAGACATATCAGAGTTGAAACTTGTAAAATAATTCTGTCCTTCATATTCTGTATTTTCTAAATAAAGAGATCACTGGTTTTAATTTGTATACATTTATTATGGATAATGTTTATGAAGTCTACACTCTAGACTCCAGCCCTTTTTTTACAACCTATTCAGGATAGTATTGTCTGACTTATGTGCATTCCACACAAGGTTTCCGTGGAGATCAGGTAGTGTGAGAATACGTGAtgatttcttttttaattttttttatcccaAACTTAAAAAGGTTAGCAAAATTGTCCCCTCCCCCACTTGGTATAGGTCTACTTATTGATTGTGAATAAGGAATGGTGTTTTGGTAATTTAACATTCATGATGCCAGGAGATAATCAGAAGATTACCATGGTGATGAAAACAAATGATTTGTGGGAGACAAAGGACTTGATACAACTAACGTCATGCCCAGCAGCACAGAGGTGGGGGACAACCTTTTAAAAGTGGCTGCCTATTCAAACACCAAGAACAAGCCTTGTGTCTACAACCACAGGATACAAACACATTGGGTTTCATCTCTGCCGGACTTTTACGCCGAAAGGTTGGTAAGGGTAACTATTTCTATTATAATTCTAGGTTATTTCAATACTTGTGTGTGATTTCATTTGACATAAAAATAGCTTTCACTTGTTCACAAAAAACTGCAACGTAAGGTTTGGGATGTGGGTACGCATCCTGTACTTGAAAAGTAAAAGTAACCTATTTGTGTGATGTCTCTGATGTTTCCAGGTTTCTTCGTTGACACATTTTCAGAGAACGAACAATCTCACAAATTATGCAGGAGAGGAATGTCCACACAATAGTGCAGTAACTTTGATGCAGTTGTTGCATACATTGATCACTGGTCAAGGGTGCAGTGTAAAGCAAGTAGCATACATTACTAAAACATACTGCTTCACATGAACTTGTCCATGTTATCTATAGTGATTATCAAATGGTTGGTCCACAGCCTACACAATCAAGAAAGAAAAAAACTGAATCTAGAAAGTGGCAGGCCTGACAAAAAGGCTGAGACTAGGTCATCCAAGAAGAGATCAGTCAGTGCCAAAGACACCAAGTTAGAAGTGGACATTCTCAGTCCAGCAGCCATGCAGAATGTTTACTACATTTCACACAATGCAGTTGACTGGAGTTCCGAGGCTTTGGATGGCCTGAgtcaacaaaaaataaaataggaGGAATGAAGAGCAAGAAAACAAAAAGGGATTCTACCATAAACCTTGCCAAGACCAAAACAAACATAGTTTAGTACGGGCTCTATTCTATCCGCATGGCGGAAATCCAGCTTTACAGCGCGACATAAATGTAAAggcaatcagtggaggctgctggggAGAGGGCAGCTCATAGTAAGGAATGGAACGTTTTAACACCATTCCAGCCAGTATGAGCCCTAAGCAGTCTCCACTGGTCCCGATTTAGCAGACTGCATTCATGCTAAACGCTGCTTATTTTGGCTAAATGGGAAATTAGCTTTACGTTGCAGAATCTGTAACacttcagtttaacagattgaaTAGAGTCCCAATTATAATGTAGATTTTAGTTGCTCTATTCTGTTCAAATTTAAAATATCATTTTGGTGACATCTGGTGGATTGGTTGTGATTTACAGAGAAGAGGGGAACAAAAACATGGAACTATGTTGACCTCTGCTGGCATATCATACCCAGATGCTCTCAAGAAAAACATAGCTGTGACGCGGGTGAAGAATGCTTCTCTGGATAATGGAGGTTAAGAATAAACATGGCAAGTTATAATAACTGCCCTACAAAATAGGGCCTCACgtgtggcgcagaggtctaaggcactgttagctgtgccactagagaaccTAGTTTGTCACCGGGAGAACAATTGTGCGgagtccgggttaggggagggtttggccggcagggatgttacTGTCCTATCGCGtaactagcaactcctgtggcaggccgctAAGCACGCTAACACGGATGCCGAGTGTACGTACGGTGCttcctccaacacattgatgcggctggcttctgggttaagcgggcgttgtgtcaagaagcggtGCGGCTTGTTTGGGTTGTTTCAGAGGACGCAGGGCTCTcggaccttcgcctctcccgagtccgtacgggagttgcagcgatgggacaggaCGGTAAACTACCAATTGAATACTATGAAATTTGGAagaaaaaaggggaaaaaaaggccctacaaaatacattttactgGATGGTGATGAAGTATTGAGTTAGTGTTATCAAGCAAGGGACCTATCTTATGTGATGTAACACCTTTCAATTTGACACAGAACCAACATCAGCAAATGTATTAATGCAGGTTTAACAGATTTAGGCACATCTGAATTAGGTCTACGATGTTAGAGAACAGCACTTAGCTTAGAATAGACGCCAAACAATGCAATTTACACGAGTGACTCATTCTCAATTCCATAACACCCACAGAAATAAAATCCATAGAACAGGCCTCCCAGTTTAATTCTAGATAACATCACTCAAAAGCAGTAACTGCACTGTTTAGTTGGCAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977775 lncRNA upstream 79815 30862588 ~ 30862794 (+) True G1726524
TU1977575 lncRNA upstream 271064 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 276507 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 289798 30652450 ~ 30652811 (+) True G1726330
TU1977531 lncRNA upstream 306030 30636366 ~ 30636579 (+) True G1726311
TU1977822 lncRNA downstream 18471 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 26831 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 38221 31020970 ~ 31021218 (+) True G1726587
TU1977846 lncRNA downstream 42452 31025201 ~ 31025513 (+) True G1726589
TU1977854 lncRNA downstream 53061 31035810 ~ 31036235 (+) True G1726597
XM_036957627.1 mRNA upstream 2113 30896005 ~ 30940496 (+) False LOC110500231
XM_036957629.1 mRNA upstream 2113 30917694 ~ 30940496 (+) True LOC110500231
XM_036957628.1 mRNA upstream 5708 30896004 ~ 30936901 (+) False LOC110500231
XM_021577469.2 mRNA upstream 47480 30889372 ~ 30895129 (+) False LOC110500227
XM_021577470.2 mRNA upstream 47480 30889399 ~ 30895129 (+) False LOC110500227
LOC110500233 mRNA downstream 7456 30990205 ~ 30997950 (+) True LOC110500233
XM_021577479.2 mRNA downstream 63281 31046030 ~ 31065651 (+) False LOC110500235
XM_021577480.2 mRNA downstream 63281 31046030 ~ 31065651 (+) False LOC110500235
XM_021577481.2 mRNA downstream 63281 31046030 ~ 31065651 (+) False LOC110500235
XM_021577483.2 mRNA downstream 63281 31046030 ~ 31065651 (+) False LOC110500235
TU1977723 other upstream 58996 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 331248 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 331248 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 351973 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 1050652 29890286 ~ 29891957 (+) True G1725312
TU1978141 other downstream 157848 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 466647 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 525307 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 581386 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 1131987 32114736 ~ 32134999 (+) False LOC110501063

Expression Profile