RNA id: LOC110500233


Basic Information

Item Value
RNA id LOC110500233
length 1677
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110500233
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30990205 ~ 30997950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCACATCTGTGTTTCAGCTGTTCTTGTGCTGCACTGAGAATACTGATTCCTTCCACGCTGAATACAGGAATCCTCTCCTCTCACAACAGAGAATCCTAGGATTGATACTACAGCAGCTCTTTAAAGATGACACCCACTGTGACTCTCAACACCGGGGCCAGCATGCCTATCTTGGGCTTGGGGACATGGGGGGCAGAAGCAGGCAAGGTAACGGAGGCAGTGAAAGCAGCAATCTCTGCAGGCTACAGACACATAGACGGAGCCTACTGTTACCAGAATGAGGACATGGTGGGGGTTGGCATTCACACCATGATTGGCCAGggggtggtgaagagagagagaggagctttTCATCGTCAGTAAGCTGTGGTGTACGCTCCATCAGAAGTCTATGGTGAAGGGAGCCTGTCAGAAGACTCTGAGTGACCTCAAGCTAGACTACCTGGACCTCTACCTAATACACTTCCCTATGTGCTTTcagCCTGGAGAGAATCTATTTCCTTTTGGTGAAGACGGACAGGTAGCCGCAGGTGAAAGCAACTTCCTGGACACTTGGGAGGCTATGGAGGAGCTGGTGGATGCTGGTCTGGTCAAGGCTATCGGTGTCTCCAACTTTAACAAAGACCAGATTGAATCCATCCTAAACAAGCCAGGCCTCAAGTATAAACCTGCCAACAACCAGATTGAATGCCACCCCTATCTGACCCAGGAGAAGCTGATCAACTACTGTCACTCTAAAGGCATCTCAGTGACAGCCTACAGCCCTCTGGGCTCCCCAGACAGACCAAGGGCGAAACCTGGTGAGCCGTCTCTGCTTGAGGACCCAAATTTAAAGACCATCGCTGATAAGCACAATAAGACTACAGCACAGATCCTTATCCGCTTTCAAATCCAGAGGAATGTGATCGTCATTCCAAAGTCGGCTACGCCCTCCCGGATCAAGGAAAATTTTCAGGTGTTTGACTTCGAGCTGAATGACGAAGACATGAAAGACATCTTGAGTTTCAACAGGAACATGAGAGGATTTGCTATGAAATGGGGCAACAAGCACAAAGACTTCCCTCTGCATGCAGAATACTGAAACCTCCGTGTGGACACCCACATTCCTACACTGGGGACATACAGCGAGAAGTCCAGTAGTTGTACAGATTCAACCACTACTGTGACCTTGTTCATGAGGCAAACAGAATGTCAATGTGTAATGTAATAACTGCCAGATATTGTTGCCTTTACTTGTTCAGAGTTTAAACATGTACGTTTACCTACATGTTGGGAAGTGCCTTTGAAAGCATGGTGTCCTTGTGCTCCTTGTTGTTATATAAAATTATATTAATAATTCCTTAGACATTGATCTTTAGAGATATCTCAACCAATATGTTAACATTGACAACTTACACAGTAAAATTTGACTCATTCCAGAATTTCTTTATGTATTGCGACATGTTTAGATTCTAATCCTGAAATAAACTGCTACCTGACTAACTTGATATATTCATATGTATAATATAGAACACAATATTGAAGCAAAGAAAGCtatcataaaaaaataaaactgttcAAGGGAACTGGGAATTTCACAACAGTATCACACAAGTCAAAGTCTGTGACTAGGGGTTTTATCATCCTGTAAGGCAGGAGTGTGGATGATTCATTCTAGGTCAAAAGGCACCTATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977805 lncRNA upstream 46014 30943866 ~ 30944191 (+) True G1726553
TU1977775 lncRNA upstream 127411 30862588 ~ 30862794 (+) True G1726524
TU1977575 lncRNA upstream 318660 30671323 ~ 30671545 (+) True G1726353
TU1977565 lncRNA upstream 324103 30665650 ~ 30666102 (+) True G1726343
TU1977552 lncRNA upstream 337394 30652450 ~ 30652811 (+) True G1726330
TU1977822 lncRNA downstream 3270 31001220 ~ 31001757 (+) True G1726569
TU1977833 lncRNA downstream 11630 31009580 ~ 31009866 (+) True G1726578
TU1977844 lncRNA downstream 23020 31020970 ~ 31021218 (+) True G1726587
TU1977846 lncRNA downstream 27251 31025201 ~ 31025513 (+) True G1726589
TU1977854 lncRNA downstream 37860 31035810 ~ 31036235 (+) True G1726597
XM_021577473.2 mRNA upstream 7456 30942609 ~ 30982749 (+) False LOC110500229
XM_036957626.1 mRNA upstream 7456 30942932 ~ 30982749 (+) False LOC110500229
XM_021577472.2 mRNA upstream 7456 30949057 ~ 30982749 (+) False LOC110500229
XM_021577474.2 mRNA upstream 7456 30949061 ~ 30982749 (+) True LOC110500229
XM_036957627.1 mRNA upstream 49709 30896005 ~ 30940496 (+) False LOC110500231
XM_021577479.2 mRNA downstream 48080 31046030 ~ 31065651 (+) False LOC110500235
XM_021577480.2 mRNA downstream 48080 31046030 ~ 31065651 (+) False LOC110500235
XM_021577481.2 mRNA downstream 48080 31046030 ~ 31065651 (+) False LOC110500235
XM_021577483.2 mRNA downstream 48080 31046030 ~ 31065651 (+) False LOC110500235
XM_021577484.2 mRNA downstream 48082 31046032 ~ 31065651 (+) False LOC110500235
TU1977723 other upstream 106592 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 378844 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 378844 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 399569 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 1098248 29890286 ~ 29891957 (+) True G1725312
TU1978141 other downstream 142647 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 451446 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 510106 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 566185 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 1116786 32114736 ~ 32134999 (+) False LOC110501063

Expression Profile