RNA id: XM_021577479.2


Basic Information

Item Value
RNA id XM_021577479.2
length 2342
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110500235
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31046030 ~ 31065651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTGGACCTGCTCTCCAAAAAGCTGATGTGTCATACCTTCCTTTCCTGGAACGACATACGTTAGTTTCAGCAAAGCTCAGGAAGCGCACATGGCAGCTCCACTCTTCTTCTCCTTTTTCTGTTTCTGGGATCCTGACAGACAGGCAGTACGGTAGTGCTTCTTCTTCTGTTGCCTGAGTCGTCTCTGTAGGCGGAGGCCGTCACTCTCGGAGCCATGAGTCGATCCTGTGTGGTCAAAGTGATCACTCTGACTGAGATCCAGATACTGCCGGtgcattactatgggacagctggagatcgaatttcaatattCAAACAATGTCGCAGATGTTGGAGAGACCGACAGCAAAGTCTGTATGGAACAGGTCCAGAGCCACCTGGAGGGCTCTAAGTTCCACCTGCACCAGGCCCAGAGTCAGCAGGTCAAGCAGTACCTGACCCTGGGTTCCAAGCTGGCCGGGGGACAAGGGGGCCACCCTCACCCCACTGCGCAGGGAGGGCAGCTCCTGGGCACCGTTCCAGTGATGAGGAATGCTCACATGGCCCCCCTCAGCGATGGCAGCACCCCCAGCAGCCCCGTTACACTGCTGACCCTGGCATCCAACCACGACAGCGAGTTTCCAATGGATGAAGTTATTGATGACTTGATTAGCCTGGAGTCCGGCTTCAATGACGGGGGCTTGGATTGTATGGATCCCAGCATCATAATGCAAAACAATGTGCTGAGCAGCAGCATGCTGGACATCTATGGGTGTGAACCAGGTATGACCACAGCCCCTCATGGCCGAATGACACCCACCTCACGCCCCACTAAGCTCACTACTGTAAAAAGGGAAGTCACAGAACATGAAACGAGAGTGATGGCCAAAGAACGACAGAAGAAAGACAATCACAACTTGAttgAAAGAAGACGAAGATACAATATCAACTACAGAATCAAAGAACTTGGAACAATGATACCAAAGTCGAATGACCCGTTATCTTTTACGTCCCTCTGCCGTAGTGATATGCGCTGGAACAAAGGCACCATTCTCAAGGCGTCGGTGGAGTACATCAAGTGGCTGCAGAAGGAGCAGCAGCACGCCAGAGAGCTGGAGAACAGGCAGAAGAAGATGGAGCAGGCCAACAGGAGGCTACTGCTCAGGATCCAGGAGTTGGAGATCCAGGCCCGTGCTCACGGCCTCCCCAGCATGGCCACTGCCCTGGGTACTGTAGagctctcctcccacctcctcaaacaacagcaacagcagcccTTGGCTCCCCAGTCACAGCAGGGTCCTCAGCCACCCCTGTACCAGGAAGAGCTGAACGGGGAGTACCTCCAGAGGACCTCCATGCCAGCCATGACCACTGGGGGCGTCGCTGGCGttacagaccagggtcaggggGTGGTTGACGGCTCCACCACTTTCTCCGACCCGCTTTCTCACTTCACAGACTTCTTCAGTGCCACGCTCAAAGAGGAGCAACGGCTGGACGAGATCCTCATGGACAACCCGCTCTCGCCGTTCGGCACCGACCCACTTCTCTCCGCCGGCTCACCCGACGCCTCCAAGGACTCCAGTCACAGGAGCAGCTTCAGCTCGGATGATGACGACCTATGATCCCTGACCCCTACGCGACCCCACGGTGACCCTTTGTCAAAGGTCAAAAGACATAGAGCAGTTGGTCACCCTCACAAATTGGTGCGGGgatttgttccagcccagcaccaaCAACACATCCGATTCTACTGACCAGCTCGAATCAATGAGAGCTTGATTAGTGGGCTCAGGTGTGTAAGTGCTGGGCCAGAGCAGACGCCTGCACACCCTGtggctctccaggaccagggttagttACCACTGGCACTCCCACTTTTTACAAACTTTGGTGGAGAGTGTGTACCTCGCGGGCAGAACCAGACTCATGAGAAAAAGGGAGAAAGACAATCGGTCCATACTGATCACATGATACGGTTCCAAAATGCATTGGACACTGGGGTTGTTGCACACCACTGTAAACTATACGGTGTCTTTGCAATATGCCAAAAGAGGACAGTGTCCTTTTTCAGATGTCTACTATTACAGTTATTGTATAAAAGGACTTTAAACCACTGAGGTTCACTGATGGGCCCTATCTAGAGCTAGTTACTGGTGGTTCCTCTTTCAGACAGAAATTAAAATGGAACAGTGATACTTGGCGAAAAAACACTTCCTTTGTTTgtctttaaatgtatttttacaaaatgttgtatgtatgtatgtgttttaaTCCATGTAttcctaaaaaaaaacattacattatCTAACATGCTCTCTTTTGTATTCTTAGTGGGGGTGGGGAAAAAATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977854 lncRNA upstream 9795 31035810 ~ 31036235 (+) True G1726597
TU1977846 lncRNA upstream 20517 31025201 ~ 31025513 (+) True G1726589
TU1977844 lncRNA upstream 24812 31020970 ~ 31021218 (+) True G1726587
TU1977833 lncRNA upstream 36164 31009580 ~ 31009866 (+) True G1726578
TU1977822 lncRNA upstream 44273 31001220 ~ 31001757 (+) True G1726569
TU1978075 lncRNA downstream 10977 31076628 ~ 31076844 (+) True G1726797
TU1978118 lncRNA downstream 50604 31116255 ~ 31116553 (+) True G1726840
TU1978223 lncRNA downstream 163330 31228981 ~ 31229201 (+) True G1726945
TU1978236 lncRNA downstream 182446 31248097 ~ 31250779 (+) True G1726957
TU1978334 lncRNA downstream 218184 31283835 ~ 31284089 (+) True G1727049
LOC110500233 mRNA upstream 48080 30990205 ~ 30997950 (+) True LOC110500233
XM_021577473.2 mRNA upstream 63281 30942609 ~ 30982749 (+) False LOC110500229
XM_036957626.1 mRNA upstream 63281 30942932 ~ 30982749 (+) False LOC110500229
XM_021577472.2 mRNA upstream 63281 30949057 ~ 30982749 (+) False LOC110500229
XM_021577474.2 mRNA upstream 63281 30949061 ~ 30982749 (+) True LOC110500229
trnaa-ugc-149 mRNA downstream 38491 31104142 ~ 31104212 (+) True trnaa-ugc-149
XM_021577488.2 mRNA downstream 362176 31427827 ~ 31436839 (+) False LOC110500239
XM_036957653.1 mRNA downstream 362176 31427827 ~ 31436839 (+) True LOC110500239
XM_036957654.1 mRNA downstream 398601 31464252 ~ 31465847 (+) True LOC118942919
XM_021577489.2 mRNA downstream 427811 31493462 ~ 31497830 (+) False LOC110500240
TU1977723 other upstream 162417 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 434669 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 434669 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 455394 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 1154073 29890286 ~ 29891957 (+) True G1725312
TU1978141 other downstream 74946 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 383745 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 442405 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 498484 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 1049085 32114736 ~ 32134999 (+) False LOC110501063

Expression Profile