RNA id: TCONS_00052798


Basic Information

Item Value
RNA id TCONS_00052798
length 360
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_025738
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52377578 ~ 52389039 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATAATGGTTTGCTGATAGGTAactgttttttttttcttgtgccaCATTTTGTAGTTTGTGAAAGTGCACTTGGAAGTATACTCTCAGTAAACTACTTTATTCATAACTTTTTTGCTACctgtaaatattttctttaagtGAACTTAACATTCTTGTAGTTAACATTTTAGGGGTGCAAGCACCAAAGTTGCATGACTACTGTATTGGTTCAGATTTTTTGTTGTCATTATTTGCACAGCAATTTCATTGATAATtgagtgaaaataaaatattaatcccACACTGACAATTGTTGTTAAGGccaaatgtttaacatttaattttcattttgcaAGATTTTAATATCAGTTTGATTGGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052797 lncRNA upstream 113432 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052378 lncRNA upstream 147425 52229866 ~ 52230153 (+) True XLOC_025735
TCONS_00052796 lncRNA upstream 476679 51895324 ~ 51900899 (+) True XLOC_025731
TCONS_00052377 lncRNA upstream 618867 51758345 ~ 51758711 (+) True XLOC_025730
TCONS_00050592 lncRNA upstream 930582 51417422 ~ 51446996 (+) True XLOC_025726
TCONS_00052379 lncRNA downstream 1213 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052380 lncRNA downstream 417233 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052799 lncRNA downstream 1137926 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 1217127 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 1243079 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00050603 mRNA upstream 83070 52275691 ~ 52294508 (+) True XLOC_025736
TCONS_00050602 mRNA upstream 210732 52145511 ~ 52166846 (+) True XLOC_025734
TCONS_00050601 mRNA upstream 266769 52093494 ~ 52110809 (+) True XLOC_025733
TCONS_00050600 mRNA upstream 266781 52092599 ~ 52110797 (+) False XLOC_025733
TCONS_00050599 mRNA upstream 287778 52078798 ~ 52089800 (+) True XLOC_025732
TCONS_00050605 mRNA downstream 53063 52442102 ~ 52465596 (+) True XLOC_025740
TCONS_00050606 mRNA downstream 78840 52467879 ~ 52471761 (+) True XLOC_025741
TCONS_00050607 mRNA downstream 84631 52473670 ~ 52474770 (+) True XLOC_025742
TCONS_00050608 mRNA downstream 86019 52475058 ~ 52490051 (+) False XLOC_025743
TCONS_00050609 mRNA downstream 98656 52487695 ~ 52496765 (+) True XLOC_025743
TCONS_00050578 other upstream 2302388 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3245101 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 4916975 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 6742392 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 7489425 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 231019 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 439873 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1678484 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2910004 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 3094474 55483513 ~ 55483647 (+) True XLOC_025789