RNA id: XM_021577488.2


Basic Information

Item Value
RNA id XM_021577488.2
length 5869
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110500239
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31427827 ~ 31436839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtcctcaccttcttccaccaacggccgttacacaaagtagatgttacTCTTACATCAAAATCAGAGAGGTGATTGCTTGAGAGCCAGGGAGAGCTTGGCTACTATACAATAATTTACCCTGAATTTGCTTTATTTTCCAAGTCCTATCTCCTTGTCCTCACTAACCTGAGACTTGGGGAATTATAGTAATACGATGACAAGAGGGTATTGGACAGATGAGGAATCCATTGTTGAGGATTGAGACTTGGCCCTGGCTCCACTTTTGATCCATGACTGAAGGACTTCATCGACACTTGCAAGTGACCTGCACGCAACATTTGCGGTCTGAGGAAGCATAAACACCGTCCACCATCGACAGACAGTCAGCCCACTGTTGTCTGCAGACGATCCAAGGCCTCTCGGGCCCTCAAACTTCATGGAGGCTCCAGACACCAGAACCTGGGGCAGCAGGGATATTAAagaggggggagtgagggaggaagaggagcgaGGAAGCCTCCCCCCACAGAAAAACGCCATGAACGAGTCGGACGAGTCAGATGGTTCGGAGCCCGAGCCCCCGGCCGTCATCTGTAGGAAGGTGTCCTTTGCTGACGCCTTCGGTCTAGATCTGGTGTACGTCAAGGAGTTTGACAGTACAGACCTGACGGGGGCAGAGGTCGTTGACCCCCCGGAGCCCGAGGTCAAAGTTAAAGAACCGGACGAGTATTACCTGTCATCTTTGTTTACCGTGCCCTCGTCTCCGGAGGAACTCGAACAGAGACTCCAGGATCAGAAGCTGGAGCTGGAGAGTATTGAGTTACTTCCTGGCACCACCGCGCTCAGGGGAATTATCAGGGTGGTGAACCTGTGCTACAATAAATCCCTTTATATCCGGATCACTCTGGATAGCTGGAAGACCAGCTTTGACCTGCTGGCTGAGTACGTCCCGGGCTCCAGCGATGGAACGACGGACAGGTTTGCGTTCAGGCTTACCCTCGTGCCTCCCTTTGCGATGGAGGGCACCAAAGTGGAGTTCTGCCTCAGATACGAGACATCGATGGGAACTTTTTGGGCAAACAACAGGGACATGAACTACGTGCTGTTCTGCCACAAAAAGGGAGGCAGAGGCCTGACAGCGATGGAGGCTCAGCTAGAGGAAGTAAAtaactggagagagaagagaagctgTCTGAAAGTCAACAGTAAGATGAACAGCGCTGAGGAGAACCCCTTGGAGACCACTACAGACGCACCAGATTCAGCTACACATAGAGCAGAGGGGGCTGGCAGGAAAACGGTGGACAACGCAGAGCATCTGCTCCCTAATTTGCATCGTGAGGATTACCATCTCAAACATTTGGGGGATAGTCAGAGGAGCAGGCGAAGGGCGGCCCGTTCAGCACGAGTGCAGGAATGCTTTTCTCAGCGAGAGCAGGCAGCAAGACGGGAACACATTTCCAATGGGCTACCACATAATGGACTGGAGAAACCACCTTTACTGCCTGACATCAGAATCAAACCCCTAGGGGACAGCGCCTCCAGTCTCCTACGATCACGCCAGCAGAAACAAACCAATGATACCCCTCAAATAATGACATACCACCAGATACCCCTACTATCCCTGGACTGGGGCAAAGATAACGTGCGTGTGGGGACTCCAGATGAGGATGACTGGATTAGAACAAGGACCACAGCTCAGCTCACATCAGACAAGTCAGAGGACAATCTGGGAGAGCAAACCTCTGTTTGTGATCTGTGGGAAGCCTTTCTCAATGGCACAGATCCCAAAGATACCACCAGTGTGCCAGAGTCTGAATGGCTACAGTCAGCAACTTCAGTTTGCCCGTCAATTGAAACGGAGGATTTTGAGACATCCTCAAATGTCGAGAACCAGCTGGAGGATGACTTGGACTCAAATACACGAAGGTACACAGACTGCACAGTAGATGAACTGACGTTGGGAGCTCACGATCATGTGATGCCTGTGGTCATTGCCAAGGAGCCACTGTCAAGCTCGGGTGTCACCATCCCCAGAGACGACAAAGCGTTGGTTTATGATCCTTCCCAAAGGTCAGAGGCTATCCCTGTAACATACACTCTACAGGAATCCATTCCCTCGGGTGCTGCAAGGGTGGTCGGGGGCTCTGTTGACAGCACGGCTCAGTGCTACGAGCATGTGGAgggggggagaagaagagaagaggagcctTTCACACCATATAAAGCAGAGCCGGTAACAAGCTCTGGGGAGACTGAGACAACAGATATGACAGCAATGGCAGAATCTCAGAATGCCAATGCAGTAGATAGAATCTGGCAGGGAGAAAGGCAAGACAAGACGCTTTCTTCCGACGTGGAAGCAGAGGTTAAAGGCAATGTGCACAAAGCAGCTGATGATACTGTGACATTTAGGGAGACAGtcggagagaggacagaggataaaacaaacacacagagctatggagtggaggagggattCACACAGGCCTACAAAGAGGATGAGCTATTCAGGCCGAACCAACCAGAGGAAAAAGAATTCACACAAGACCTCACAGGAGACGTTTTGCATAAACAGAGTGAGACAGTGGAAGATGAATTCAGAATGAACCAAAGAGAGAGAATGTATTTAGAACTGAACCTAACACAGTTTGAAGAATTCAGGCCGAGTCGAACGTATGAAGATGAATTCAGGCTCAATCAAACAGAAAAAGAAGAATCAAGcctgaaacaaacacacaaagagGAACTCAGTCCAAACAAATCAGACAAAGTTGGAATCAGACCATTTAATACAGTGGAAGATGAATTAAAACCAAAACAATCAGAGGCAGAGAAATTCAGATCAAATCAAAAAGATGAAGAGGAATCGAGACTGAACCAAACATTCGATGATGAATTCAGCTGGAACCAAACTGAGGTAGAGGAATTAAGACCGAACAAAATTGAGATGGAAGAGGAATTCTCCCCAAACCATCAGGGCGAAGAAGATGACAGACGGAGCGATACAGACAAAGAATTGCGCCTGAATCATAAGGATGAAGAGATAGACAGAGCGAACCGGACATTTGCTGAAAAATTCAGACCGAACCAAGCACTCAATGAAGAATTCAGATCAAATGAATTGGAGGAATTCAGACGGAGTCAGTTTGATGAagaactgagagacagagacaacctAGAAGAGGTTGAAGAATTCAGATCCAACCAAACACACGAAGTGGGATTCTGGTCAAATACAAGGCAAGAAGAAGATATCTATCAGAGCCTAAATGAAGAGGAGCTATACAGAGACATTGATATGGATGAAGAATCATCAACAAACAACCTAACAGAGCCTGAAGTATATAGGGAAAAGACCACAGGAGAAGTGGAAAAGACAGACAATGTCATTCCCGAAAtgtccagacagagagacaccgaACAGATACATGAAGAAATACGTTTCAAAACTCCAgcgaaggaggaagaggaggacttAACGGACGATACAGCAAACACTGGAAATGAGAGTGAGGACGTGTCAACGGAAAAGGAAGGAGAGCATGAGGTGACAATGGAAAACGTTGAATGTCCAAGACAAGATGAAAATGGAAAGTTGTCAGAAGGGTCAAAAGAACTTATTGTGAAGGATGATAAAGAATGGTTGGGAAAAGAGGTAGAGTTGGGCGAAGATGAATATTTCAGAGAACAGAAAGGTTTGAATGAGGAAACGTTAGAAGAGGTGCTATATTTGCAGTCGGTTGATAATTGTCCTTTAGCCGAACAAGAcaatgaggaagaggagaaactGTCAGACGTGCCTGAAGTCGTTCAAAATGTGCCGATCCATCAGCCAAAACGCTTCACTCAGAAAGTGGTGACAGACATAGACTCCGAGGTAGATTCTCTCATGAAGGCACGTACAGCTCCCAATTTGACCTTTCCACCGAGACCAGGCCGTAGCCAAACTACACCCAGTAGCAATGCAGAGCCCTCTATGGGAGATGTACCTCTTTCAAACAGAGGTACAACTGTCTTCTCTCGTTCATCATCTCTAAGCACAAGATTTAACACAGTGGTCAGTGAAGGGAGTGAGTCAGGATTCAGTAAGGGGTCAACCCAAAACCTATCGTCATTAGGGGAGGATCAGGAGACCCTCAGCAGCCGTACGAGCCCTCCTCCCTCAGAGAAAGTGGAGGATGCTGCCAGCAGCGTCTTGGCATGGCTGAGGGTGTTCTTCTCTCTCAGTAGCGTAACCAGAGCATTGGTTTATGCCCTTTTGGTAGCAGTGTTTGTCTTTACCACTCTTGTGTATAATTTCCCAGTGTGCTTTGGCCTCTACTTGTTTTCACTGTATTGGTGGTGCTGTGTGGCAGATAGGCAACGCGTGACAGGGACTGACagaatagatggggagagatgaagtgCTTGTGTGTATAAAATAATAATGTTGTGcacgtgcgcatgtgtgtgtatgatttgggtaacactttacatgaagTTGCTCTTATacctgtgtagtaacactgtcatttcTACTGTGGCAACATCATTGTTACCGTACATAGTACTTCAGTATTAGCTATTGTAATTATAATGCAGTTGTTTATACAATGTTGTTACCAGCATAATGACAGTGTTTCAACAGAGGTATGAGAGCAACTCAATATAGAGTTACCATGATTTGTTTAAGTTTGTTGCAGTGTTTTATGGGCCCAATATCAAACGTGAAAATGTACCAAAGTATTAAAGGGGAATGAAATCCATTATTCCAATAGAGGACAAAAAGGGTTAGCTAAACCGAGTGGGGCATTGGAGATTTGAAAGTGaagtttctttctttctttatttatttaaagtttttttttctttctcaacAACGATAACATACGAGCTTCAAGAAAAAGCTGTCCAGATTTTCCTCAGCTCTAGAAGCTGACTAAAGAGTGCCTTGCATAGTCATTGCTGCACAGTAGTTCAAATGTTTTCATTTAGACTAGCTGATCTGTATGGTCATCATGTCGCTCCTCTGTAGTGAACTTGAAATGTATAAGTCACACATCCGTGTTGGCAGCAGTTGACTGGGCTGGAGTATACTTTAGGCAGACATAATATTACAATATCTCTCTGATCCTGGGAGATCACTTACTGGCCCCTATCTGACCTATCTTTCTCAGACTTGTAGCCTACAGACAGTAAGGTCAAATGGACTGCACTTTTTCACCATTTAATCATTGTAAGGAttggagatgatgatgatgatgatgatgatgatataatAAGTTGTGTGATTTCTGTGGCTTTGTCTTTCCATTAAAAGTCCTGTATTTGACTTTGACAGACTACATTTTTCCTGCAAATGTTTTCAGAAATTCCACTAAAGTTTCACAAAAACGTTTTCCTGAGTATTATTAATCATGATATGAAGAAACAGAAAGTCCACTGCAATAGCTTCTTGTAAAGTGGTGGACGTGATATGTCTTCCGTTGCCCAAGTCCCAAAGTGCTTGCTGTCCTCAGACGAACCATAGAGGGCCGCTAGTGCTAAATCACAGGAGAGTTGGCAGGTGATGTACTGTGAGTGGGTTCATCGTGACTTACTTGAGGGTTGGGTTTTGATTTCGAAATAATGCTCACTTGCCCACTAACACGGGATACACAGCTGCGCTTTAACCAATCGTACTGCAGACAATGGCCACAATCCCCTGCTCAGACATTGCATGCAccaaccaatggttgcgtgccacgtcatcaactgtgtcatcaactgacagattgctataaaATACATTATGATGTGGTTATCTGATACGTAAATATACCTATCAAGGCGTTGAAAGATCTGGCAGGCATGGctttacttgagaaatactgcaccaaacaccttagctAGATGTAAGATAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978370 lncRNA upstream 106947 31320279 ~ 31320880 (+) True G1727084
TU1978340 lncRNA upstream 139647 31287977 ~ 31288180 (+) True G1727055
TU1978335 lncRNA upstream 143323 31284093 ~ 31284504 (+) True G1727050
TU1978334 lncRNA upstream 143738 31283835 ~ 31284089 (+) True G1727049
TU1978236 lncRNA upstream 177048 31248097 ~ 31250779 (+) True G1726957
TU1978429 lncRNA downstream 11010 31447849 ~ 31448075 (+) True G1727143
TU1978433 lncRNA downstream 19330 31456169 ~ 31456407 (+) True G1727147
TU1978434 lncRNA downstream 20185 31457024 ~ 31463251 (+) True G1727148
TU1978441 lncRNA downstream 30346 31467185 ~ 31467721 (+) True G1727154
TU1978443 lncRNA downstream 34680 31471519 ~ 31471810 (+) True G1727156
trnaa-ugc-149 mRNA upstream 323615 31104142 ~ 31104212 (+) True trnaa-ugc-149
XM_021577482.2 mRNA upstream 362176 31046033 ~ 31065651 (+) False LOC110500235
XM_036957654.1 mRNA downstream 27413 31464252 ~ 31465847 (+) True LOC118942919
XM_021577489.2 mRNA downstream 56623 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA downstream 56623 31493462 ~ 31497830 (+) True LOC110500240
XM_021577492.2 mRNA downstream 131556 31568395 ~ 31589029 (+) True tmem168a
XM_021577498.2 mRNA downstream 244101 31680940 ~ 31684896 (+) True LOC110500245
TU1978141 other upstream 286737 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 544214 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 816466 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 816466 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 837191 30582002 ~ 30590636 (+) True G1726209
TU1978432 other downstream 12557 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 71217 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 127296 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 677897 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 699116 32135955 ~ 32136696 (+) False LOC110501063

Expression Profile