RNA id: XM_021577489.2


Basic Information

Item Value
RNA id XM_021577489.2
length 3120
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110500240
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31493462 ~ 31497830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGATGTTGCCACGAGAGACTATAGTGCTGCAACAAGAGACAAGACACGTCTTGGATCACAAATAGGATCCGTGCGCATGCTCCGTCTGTTCCGTTTACTGTATATTCACTGTGGTAAAAGGGCAGGCAGGCAACAAACCAAGCTTTTTACAGCAAAGTGGCTTCTACAATGTAAATACGCTCCAGGGAAACCAAAAGGGATATCAACAGGTATTTTTAGGTGTGATGAGACAAAAGAACAAAGGATGCCGTAGAAGAGAGGCTGCTTACAAGCCGGGAATCTGCTTCAAAGCACAACAAATGGATCTATCGCCTCCCCCTGCCGCCTCTAGATAATGATACTTGGCTGAAGCTACTACATCTTTATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCTCTCGCCACGTTTCTTAAACTGACATCCCTGGGTTTTATCATTGGAGTCGGCGTCGTTGGCAACCTCCTGATCTCCATCCTACTGGTCAAAGACAAGAGCCTGCACCGCGCACCGTACTACTTCCTGCTGGACCTGTGCGCCTCGGACATTCTGCGCTCCGCCATCTGCTTCCCCTTTGTTTTCACCTCCGTCAAGAATGGTTCCACCTGGACGTACGGCACGCTTACCTGCAAAGTGATAGCCTTCCTGGGGGTGCTGTCCTGCTTTCACACAGCATTCATGCTCTTCTGTGTGAGTGTGACACGCTACCTGGCCATAGCCCACCACCGCTTCTACACCAAGAGGCTCACCTTCTGGACGTGTCTGGCAGTCATCTGCATGGTGTGGACGTTGTCGGTGGCCATGGCCTTTCCCCCGGTGCTGGACGTGGGGACGTACTCCTTCATAAGGGAGGAGGACCAGTGTACGTTCCAGCACCGCTCGTTTCGAGCCAACGACTCCCTGGGCTTCATGCTGCTCCTCGCCCTGATCCTTCTGGCCACACAGCTTGTCTACCTCAAGCTAATCTTCTTCGTTCATGACCGCCGGAAGATGAAACCAGTCCAGTTTGTGCCTGCCGTCAGCCAAAACTGGACCTTCCATGGCCCCGGGGCCAGCGGCCAAGCAGCGGCTAACTGGCTGGCGGGGTTCGGCAGGGGCCCCACCCCGCCTACCCTGCTGGGGATCAGGCAGAACAGCAATGCAGTGGGCCGGCGACGCCTGCTGGTGCTGGACGAGTTTAAGACTGAAAAGAGGATAAGTAGGATGTTCTTCATCATGACCTTCTTCTTTCTCACGCTCTGGGGCCCCTACCTAGTGGCCTGCTATTGGAGGGTGTTTGCCAGGGGCCCCGCGGTACCAGGGGGGTACTTGACCGCGGCGGTGTGGATGAGCTTCGCCCAGGCGGGAGTTAACCCTTTTATCTGCATCTTCTCCAACAGGGAGCTCCGGCGCTGCTTCAGCACCACTCTCCTTTACTGCAGAAAGTCCAGGTTACCTAGGGAACCCTACTGCGTTATATGAAGGCTTGGGTTGTTTTTTTCCTTCCACTCCTCCACTGATTGACATAAATTTGGGTTTTGTCCCATTGTacagctctctttctcttcatcctCCTGTTTCTCTTcctactccttccctctcttctgaGGCAGAAGTTGGACTGTCAATCACTCCCTTGGTTCTGTGATTGAACATCATACATGGAGGTTGAAGGGAATGAATAAGCAGGTAGCTGAGAACCCTTCCTATGTTTATGTTCTAGTAAACAACTGCTGTGGAAAGTAATTTAGAAGCAGAGAAGAACAAAAAAATGGTGaaactacaaaaacaaaggaCTGACCCCTTGCTTTGGATATTTTGAAGATAATTCAGTGAGGTAAAAGATTGCGgtgaaaaaaaactgaaaactaagAAACCATTTCCTCTAAGGAGTCACTGGAATTGTTTTACATTTAAAAGTTGCACTAAAAAGAAGATGTAAAGATGCTTTTTTTGATCAACGGTTGCATTGCAAGGTGCAAGGACAACTTGGTTTTCCCTCTAACTAAACAATGAATGCTTTAATTTGCAAATGACACCCCATTCGTTGTATGTAAAGCAAAACAATGTTGGGTGACTAACTGTTGGAATACACCTTCACAAGAGGATTAAATTGGTTTTAATGTAAGTGatatctttttttattttgggGGGTGAGGGGGGCAGGGGTGGGGGGCTTAATGAAGGGAATAATGATGTGTGGTTTTGAAGTTGCAACTTAAATCTATAAATGATTTCTTGTAGTTGTATGATCCATAAGTCCCTATTGTTTGGAGTAGTTATTTTTCAGAATCTGCTCACAtttgacaaaaaaacaaaaaaaaaacagattacaTGGTGTTTGGATAAAAACTTGTTTTTTGAGAACAAACAAACCTTAAAAAAAGACAGTGAAGATATACTTAAATGTGTCACATCCATGTTACCTAAACACTGAAATATTGTTACAGTATTGCTGAAGCCACTCCAGGTGTTCTTGCCTTAATGGTTCTGATATTGTTCTGTTTTTCAGTTGTTGGGTTTTCTTATCCACTCCTGAAAAGTACTTTATTCTTTTCACATCAATGTCAAGTGcatgttcatttaaaaaaaagctgGTCCACTCTCATAAGCATCACAGGTCGTACACTCAGCAGAGTAGCCCATTTTATATTCTGCAATGGTTTGCAATGTACACCCCACAGAGTGCTCAGAGCAcagggagcgtgtgtgtgtgtgtgtgtgtgggtgtgtgcggaCACGTGTGTGTGAATCTTCAGACAACTGTCACTTCAAGACCAGAGCCTTAGTATGAAATCTTGCACAATTTGTAAAAAGTGTTAAAGGAAAAAAACATTTCAGGCACACCGTCATGTTTATACTTTCCCTACATTTGCTCTCTACTGATTGTTTTCAATAACTTACGTTTTCTCTTGTGGCCATTTTAATATTTATTCTGTATTATTTTTCGTATATTATAGATAGATTGTGTGTAAGTATGTGAGTCTTTCATTTTGAAGTCCCGAATGTGAGTACAGTTTAAATTAGGATTGCATTTGCTGAAAGTTAACTGTGTAATCTGTTGCTTCAATTTTTGAAAATAAAATTTTACATTTTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978424 lncRNA upstream 1154 31491516 ~ 31492308 (+) True G1727138
TU1978452 lncRNA upstream 11179 31482003 ~ 31482283 (+) True G1727165
TU1978445 lncRNA upstream 19334 31473895 ~ 31474128 (+) True G1727158
TU1978443 lncRNA upstream 21652 31471519 ~ 31471810 (+) True G1727156
TU1978441 lncRNA upstream 25741 31467185 ~ 31467721 (+) True G1727154
TU1978427 lncRNA downstream 2173 31500003 ~ 31500317 (+) True G1727141
TU1978463 lncRNA downstream 4148 31501978 ~ 31502194 (+) True G1727176
TU1978469 lncRNA downstream 10688 31508518 ~ 31508749 (+) True G1727182
TU1978471 lncRNA downstream 14877 31512707 ~ 31512922 (+) True G1727184
TU1978482 lncRNA downstream 25582 31523412 ~ 31523653 (+) True G1727195
XM_036957654.1 mRNA upstream 27615 31464252 ~ 31465847 (+) True LOC118942919
XM_021577488.2 mRNA upstream 56623 31427827 ~ 31436839 (+) False LOC110500239
XM_036957653.1 mRNA upstream 56623 31427827 ~ 31436839 (+) True LOC110500239
trnaa-ugc-149 mRNA upstream 389250 31104142 ~ 31104212 (+) True trnaa-ugc-149
XM_036957632.1 mRNA upstream 427811 31050290 ~ 31065651 (+) False LOC110500235
XM_021577492.2 mRNA downstream 70565 31568395 ~ 31589029 (+) True tmem168a
XM_021577498.2 mRNA downstream 183110 31680940 ~ 31684896 (+) True LOC110500245
XM_021577494.2 mRNA downstream 187577 31685407 ~ 31736831 (+) False LOC110500244
XM_021577495.2 mRNA downstream 194456 31692286 ~ 31736831 (+) False LOC110500244
XM_021577496.2 mRNA downstream 197201 31695031 ~ 31736831 (+) False LOC110500244
TU1978432 other upstream 43345 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 352372 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 609849 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 882101 30605300 ~ 30611361 (+) False G1726222
TU1978468 other downstream 10226 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 66305 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 616906 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 638125 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 660082 32157912 ~ 32162392 (+) True LOC110500252

Expression Profile