RNA id: XM_021577498.2


Basic Information

Item Value
RNA id XM_021577498.2
length 1887
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110500245
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31680940 ~ 31684896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAAGACAGGTTATAAAGAAACACCAGGAGTCAGTCGGACAGGCAGCAGCTACCAGGCAGAACGAGAGTTTTAAGAATCAGAAGAACGCTCATTCACCGGCGAATTTATAACTTAAAACGTTGGCAACTAGCGCAGACGTAGTACTGTTATACggAGATGGCAAACAGCAATGCCAATGGGAGTACCAACAGTAATGTGAATGGGAGTGCCAAAGCTGGGCTGCCAGGGGATATGGATGGCATGGAGGACAGTGTGGAGTTCAGGCTGATGATGGCGTACGCCCAGAGGAGGAGACCTAGGGAGGTGTTGTGCCCGCTACCTCAAGGCACAGACACCCAGCCGGGTGGTGCACAGACACTAGAGGGCCATGCAGACACATTTataaagaaggagaagaagaggaagaagaaggggaTTAGAAGGAGGCTGCAGAGCTTGTTGAGCTGTATCCGACCCCACAGAGATAGTACAGCTGTAGCATCAGGACCaccaagaacaccatcaccaccaacgGGCACCCAGAGGTCCTCCTTCAGATCCTTTGGCAACTCGAGAGATGAGCTGGGGGAGGTAGCTGACCGGTTGACTCAGATTGCTGACGGAGTGACCTTCAGTTCTGGGGACCTGGAGACTGACGGAGAGGAAGATGCTATAGAGAGGCTGGTGGGGCTTCTGCTGAGAGGAGCGGGAGACAAACTCAATGAGGAGGTCCTGAAGGACGCCTCTCTGTCCTCAGAGCTCTTTGGCTACAGCTTGTATGAGAGGACCATCTCCACCTTCCTCGGCAGACTTGGCCTGACCTCGGACCCCAGCACTCAGGGGTCACCCACGGCCCAAATCGCCATGACTTGTGAGGTGACCAGTCGCCTGTCAGCGGTGGACAGCCTCCCTATGAGCCGGGTGCTGGGATTTGGAGCGAAATACCTGCAGGATCACTTCTCTTCCTGGGCCATACAGCAGGGTGGATATGAGGAAGCTTTTGTGAATGATGAGGAGGAAGTCGACTGAGTCAGAGGGATTTTCCCCATCCTATACACCCATTGGTTCTTCCTGATTATCCACCCTTTTCCCAAAGTATGCTCTTGCGCACTTTCTTCCATGGATCAGAATTTCATTGGTGTAGGTATTGGCTAAAGTGAGTTTCCACCATTGTTAAATACATGGGAAAGGGTGGAGAATTGGGACGTCGccctctaaccccaacccctagaGAAGTTTCAACTCAGGTTAATATTGCATGCCCAATTTAACATTGATTTTGCACAAAGAAACATGCACATAGAAATATAGACTGTCTTCCAGAGCCATAGTATATAAGAACATGTACATCTCAAACCCCAttccttttttttaaaaattatacaTTGATATGATATAAGAATGTATGTGTAAGTACAGTATTCAGGTGTTTTGTTAACATTTTAATTTGGACtaggaatgtaaaaaaaaaaaatagaaacatatttacttgattttttttattgtaagaataataatgatgatgagacTGTCGACTATTGATGTAGCCTATGCTGTCTGATccaaataatgtttacataaagCAAAGAGGTCAACATGCCAGACCTCCAGGACTTATGTCCTCAGTTGATCCAGAGATTGAACCACTACATGGTTAAACCATGACTGGACCAAAGACTGGGGCAGCTACTGTAGCCTACATATACTGTATGGAAGTGCATCTATTCTTACTGCTATATGGTCACACTTTCATTCTGTGTGCTGAGTCTATGCATTGGAATGTCTGACTTGTTTAGGAATAATTAAACAAATTCCATGTTATGATTATAGTGTTCAATGTTAACACTGATTTAGACAGCTTTGTTTCAATATTGATTTATTGAATAAAAATAGTTCTGTTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978794 lncRNA upstream 2209 31678478 ~ 31678731 (+) True G1727480
TU1978782 lncRNA upstream 22350 31658355 ~ 31658590 (+) True G1727468
TU1978739 lncRNA upstream 79804 31600791 ~ 31601136 (+) True G1727427
TU1978511 lncRNA upstream 112779 31567955 ~ 31568161 (+) True G1727224
TU1978502 lncRNA upstream 128151 31552493 ~ 31552789 (+) True G1727215
TU1979345 lncRNA downstream 458268 32143164 ~ 32144886 (+) True LOC110501063
TU1979404 lncRNA downstream 512623 32197519 ~ 32220621 (+) True G1728051
TU1979406 lncRNA downstream 551425 32236321 ~ 32236640 (+) False G1728052
TU1979405 lncRNA downstream 551491 32236387 ~ 32239087 (+) False G1728052
TU1979407 lncRNA downstream 551491 32236387 ~ 32236640 (+) True G1728052
XM_021577492.2 mRNA upstream 91911 31568395 ~ 31589029 (+) True tmem168a
XM_021577489.2 mRNA upstream 183110 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA upstream 183110 31493462 ~ 31497830 (+) True LOC110500240
XM_036957654.1 mRNA upstream 215093 31464252 ~ 31465847 (+) True LOC118942919
XM_021577488.2 mRNA upstream 244101 31427827 ~ 31436839 (+) False LOC110500239
XM_021577494.2 mRNA downstream 511 31685407 ~ 31736831 (+) False LOC110500244
XM_021577495.2 mRNA downstream 7390 31692286 ~ 31736831 (+) False LOC110500244
XM_021577496.2 mRNA downstream 10135 31695031 ~ 31736831 (+) False LOC110500244
XM_021577497.2 mRNA downstream 26307 31711203 ~ 31736831 (+) True LOC110500244
XM_036957656.1 mRNA downstream 60877 31745773 ~ 31800121 (+) False LOC110500247
TU1978507 other upstream 116346 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 172568 31508056 ~ 31508372 (+) True G1727181
TU1978432 other upstream 230823 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 539850 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 797327 30881843 ~ 30883613 (+) True LOC110500226
TU1979347 other downstream 429840 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 451059 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 473016 32157912 ~ 32162392 (+) True LOC110500252
TU1980944 other downstream 1636557 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 2025196 33710092 ~ 33868977 (+) False LOC110500285

Expression Profile