RNA id: XM_036957656.1


Basic Information

Item Value
RNA id XM_036957656.1
length 2425
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110500247
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31745773 ~ 31800121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACAGATGCAACGGTATGCAGCACGCCGATGTGCTATCAAAAGCTCAAGTTCAGCAGCGCCACTCCGTGTCTTGCAGCTGACCCTCGTTTGGAGATGATACCTTGACAGTGCTTGTGGTTGACCACGGTTCAGACTGCTTTGATCAGAGGACAAGTAGCGGTGTCCACCTTGCGCTCCTCTCTTCTGGAGCCCTAGGTCCGAAGTTGTTGGATTCTCTTCGGAACGCTGGGTCCGAATCTGTTGGATTCGAGTCAAGATATCGCCTCACCTTGTTACAATTTGTAGAAACACTGATTAACTTTTGTTCCTCCATCGCAACTGCTTTCAGAACAAGGATTGTTTTACATTGACCAATCGTTTGACATCCCAGCTCCCGTGTCTGGAACTGAGGATGGGTGGCTGAACCCGGAACCCGCTGTGTGATCTATCGGCTCTGTGATTGGTCCGTTCTGGTTCCGGTCGCTACCTGCTGCCATGGCGAAGAGTCCCGAGATGAAGCTGGCCGTTTTCGGTAGAGCAGGAGTGGGTAAATCAGAATCAACATATCGCCATCAAGCAACCATAGACGATGAGGTTGTGACCATGGAGATCCTTGACACAGCCGGACAGGAGGACACGCAGCAGAAGGAGAGCCACATGCGCTGGGGCGATGGCTTCGTCATTGTCTATGACATCACTGACCGGGGCAGCTTTGACGAAGTGGCTCCTTTGCGAGGCCTCCTAGAGGAAGTCAAGAAACCCAAGAATGTCCCGTTGGTTCTGGTGGGCAACAAAGCCGATCTAGACCATGCCCGACAGGTGGGCACAGAGGAGGGTGAGCGGCTGGCTGCCGAGATGGCGTGCGCCTTCTACGAGTGCTCGGCGTGCGCCGACGAGGGTGGCATGGTGGCGGAAGCATTCCATGAGCTGTGTCGCGAGTTGAGGCGCCGCAAGGTGGTCCAAGGCAAGGCCAGGCGCCGTAGCTCCACCACCCACGTCAAGCAGGCCATCAACAAGATGCTGACCAAGATCAGCAGCTAGGGGGAGCCGCTGAGCACACTCCACAAAGAGGATAAACTCAAGAAAAACTAAAGAACAAAGTGACTGATTTCAAGGGTTTAGATGTGTAGAAATATCACGCAGCCATCAAAGCTCCTAAAGAGCACAAATATAAAATGATGAATGAACAGCGAACCTCTTCGTACTTAGTATCAATGCACAATCAATGAAGATTTGCATTGATACCGAGTGTGCCAAAAATCGCTCTCCATTCAACACTGATTCTAAAGGGGAAGGTTGTAGGCCATTATTACTCGCTCTTTGACCACGCTCCACAACTAAGGTCAGAAGCACAAAGGGGAACATAATAATCACATGATGGGAACTACTTTGTCTGTGAGGGAGGTGAAGATGCTTTTGTTTCATAGCCAACTGGGACATTTCTGTATACTGCCAAGGAAGGGGGGAGAGTCCGTTATTCAGAAATCCCAAATCTCTGAAATTCACTCTCCCTTCTTGAGCAGCATGGTGAATACCCCAGTTTTGTGTCTCCACCAACTTTAAAGAAAATATTGTCCATGAACCCACCCTTTGTTTATTAGAAATAATGGACAAACCATTTGTAGTTTCCTGTAGCTTGTTTGTGGGATAATGTTTTGATATGCTCTaggccagtgtttcccaaccctggtcctccagtacacaTCCTTATTGTAAACCTAGACAAGCACACCTCGTTCCACTTGTcagctaatcatcaagccctcaatgagttgcgTTAatccagggctacaacaaaaatgtgtacgAGGACCGGTGTTGGGAAACACGTCTCTAGGTCAACGGATGTATGTTCTTTGAGCAGCGTTAAAAGATTCATGAAACATCAACAGTTTTCATGGTCTTAGATCATTATGTCGTCCGTTTGCAGAGCTCTGTTGGCCTTGGGTACTTGTTGACCTTAGACATATCCTTTGAGCTGTGACACGATTGGTCAAATAAACAATTGTCCATCATACTATGTCTCCCTCAACCCCCATCTCATACCAAGCATAGGACAGGGCTATAGAGATCATATCTCAAATATGTTTTTCATCTAAAGAacctaagaggaggaggaggagaccaaAGTTTTCAGTTTAAATCAACGCTAATACTGTTTCATGGTATCGTCCATCCATCATTCCGGTTCAAATTCCAGGAACGTTCTAAATGTACCTTAATTGTAAACTATGTATAATATTGCCTTTATCATTGGTCTCAAAGGagtgtacagtacataacccagAGGCAGACAAAATGGTCGATATGTCTCCTATATTTTAACCAAATGCTGTTCCTTTGTTAACGAATGTACCTGAGCTGACTGAGTTTTGAGAATGGGGATACAATGGACAAATTTGCTGTGCAATTGTAATTAAACATTAGATACATGTATATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978794 lncRNA upstream 67042 31678478 ~ 31678731 (+) True G1727480
TU1978782 lncRNA upstream 87183 31658355 ~ 31658590 (+) True G1727468
TU1978739 lncRNA upstream 144637 31600791 ~ 31601136 (+) True G1727427
TU1978511 lncRNA upstream 177612 31567955 ~ 31568161 (+) True G1727224
TU1978502 lncRNA upstream 192984 31552493 ~ 31552789 (+) True G1727215
TU1979345 lncRNA downstream 343043 32143164 ~ 32144886 (+) True LOC110501063
TU1979404 lncRNA downstream 397398 32197519 ~ 32220621 (+) True G1728051
TU1979406 lncRNA downstream 436200 32236321 ~ 32236640 (+) False G1728052
TU1979405 lncRNA downstream 436266 32236387 ~ 32239087 (+) False G1728052
TU1979407 lncRNA downstream 436266 32236387 ~ 32236640 (+) True G1728052
XM_021577494.2 mRNA upstream 8942 31685407 ~ 31736831 (+) False LOC110500244
XM_021577495.2 mRNA upstream 8942 31692286 ~ 31736831 (+) False LOC110500244
XM_021577496.2 mRNA upstream 8942 31695031 ~ 31736831 (+) False LOC110500244
XM_021577497.2 mRNA upstream 8942 31711203 ~ 31736831 (+) True LOC110500244
XM_021577498.2 mRNA upstream 60877 31680940 ~ 31684896 (+) True LOC110500245
XM_021577503.2 mRNA downstream 73427 31873548 ~ 31894544 (+) True LOC110500249
XM_036957659.1 mRNA downstream 314292 32114413 ~ 32144886 (+) False LOC110501063
XM_036957660.1 mRNA downstream 314294 32114415 ~ 32144886 (+) False LOC110501063
XM_021577508.2 mRNA downstream 352995 32153116 ~ 32162456 (+) False LOC110500252
XM_021577509.2 mRNA downstream 368679 32168800 ~ 32180603 (+) True LOC110500253
TU1978507 other upstream 181179 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 237401 31508056 ~ 31508372 (+) True G1727181
TU1978432 other upstream 295656 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 604683 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 862160 30881843 ~ 30883613 (+) True LOC110500226
TU1979347 other downstream 314615 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 335834 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 357791 32157912 ~ 32162392 (+) True LOC110500252
TU1980944 other downstream 1521332 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1909971 33710092 ~ 33868977 (+) False LOC110500285

Expression Profile