RNA id: XM_036957659.1


Basic Information

Item Value
RNA id XM_036957659.1
length 5637
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110501063
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32114413 ~ 32144886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTACACGCCCCCGAGTTTCACCCTTTCCCATGGCATTGAGCAGCATGCAGTTTAGCGTAGCTCATAGTTTGTGTGAAAGGTTACTACAGGGTTAGGTCACAGACATAAATTGCACATAGTACTCACGCAAACACCCCGGGAGAAACTCCGGCGAACGAGACGGACCAGTGTTCCGCTGGATTACCTAGTGGGCGTGCACCCCTCTCTTACCGCAGCCCAGTGCGTGTAGGCTTCTGCCGCGCTCATTGAGCTTGCTAATGGGAATTTGTTACTACCTGCTTCCCAGTTGACAGCTCACAGAACCCGTAGCATGGCTCAGGCGGTCACGGGCGGCTCTATGGAAAGGGTGATTCTGGCTGATTGAGCGTTGTATCCGCCATCCCTTGGGGAGGAATAATACATTCTGTTGTTGCGGCAGTGAGTGGATCTATTCCCTAGTATGTAACCTGTGGTTTGCGATAGTGCCTCGGGCATCGTGGACGCGCGGTGGAACGGAATAATCAATATTTGGACCGTTATCTGATTGACCATCGTTAGTGCGCCGACATGTCGAACCTGGTCAGGAGCAAGAAGGACAAGGAGATAATTGCAGAGTATGAGAGCCAGGTGAAAGATGTGCGTGCCCAGCTGGTGGAGCAGCAGCGGTGTTTGGAACAGCAGACAGAGATGAGGGTGCAGCTGCTGCAGGACCTGCAGGACTTCTTCAGGAAGAAGGCTGAGATCGAGACGGAGTACTCCAGGAACCTGGAGAAACTAGCAGAGCGGTTCATGGCCAAGACACGCAGCACCAAGGACCACCAGCAGTACAAAAAGGACCAGAACTTGCTGTCTCCAGTTAACTGCTGGTACCTGCTGCTGAACCAGgtgaggagggagagtaAAGACCACGCCACACTCAGTGACCTCTACCTGAACAACGTCATCACCCGCCTCACGCACATCAGCGACGACTCCGCCCGCCTGCTCAAAAGAagTAAAGAGATCACCTTTCAGCTGCAGGAGGACTTGATGAAGCTCCTTAATGAACTCTACACCGTGATGAAGACATACCACATGTACCATGGGGAGACGCTGAACGCGGAGACCAAGCTGAGGGATGCCGAACGTCAGGTGGGGGTTGGCAAAGTGGGGCCTGGCGGAGGGGTGGAGCCGCTATTCGGCATGCGTATAGAGGAACGCCACCAGAGACGCAACGCCGCCCGCAAGATGGAGAAGATGAGGGAGAAGAGGAAGGCTAAGTACTCTGAGAACAAGCTGAAGTCCCTGAAGGCCAGGAACGAGTACCTTCTGACGATGGAAGCCACCAACTCCTCCGTGTTCAAATACTACATCCACGATCTGCCCGATATCATAGACtgttGTGACCTGGGGTACCATTCCAGTCTGAGTCGTGCGTTGAAGACCTACCTGTCTGCAGAGCTGAGTCTGGAGGCCTCCAGGCGGACAGggttggaggtactggaggggGCCGTAGAGGGCCTGGATCCTGCCCGAGACAGGCAGCGCCTGCTGGGCCTCTACCCCACTGCCTTCTGCCCCCCGCCACGCTTCAGCTTCCAGCCCCACATGGGGGACCCCGTGACCCAGATAGCCGCCCAGCCACAGGTGCAGGCAGAGCTCACATCTAGGCTGCAGCAGCTCCAGTCACGCCTCTCCACCCTGAAGATAGAGAATGAGGAGgtgaagaagacgTCAGGGGCCACTCTCACCACCCTCCAGGACATGACAGTGCTGGATGACTATGACGTTTCCCAGAGTTTCACCCACAGTCCCTCTTCAGAGTCGGTCAAGTCCAGCGTGTCGGACGGCTACCTAAACAAACCCAGCCTCGCCAAGCGCCGTGCCAACCAACAGGAGACTGAGCTCTTCTACTTCACGAAGTTCCGTGAGTATCTGGAGGGCAGTAATCTGATCTCCAAACTACAGGCCAAGCACGACCTGCTGAAGAAAGCCATGGCCGAGGGGCATATAGCAGACACGCTGACCACCAGCCGTGGACGAAAGAACTCCCATAGCAATCACCAGGACTCGACTAAAGCCATTCCTCTGCTGGTGGAGAGCTGCATCCGTTACATCAACCTCCATGGTCTTCAGCACCAGGGCATATTCCGTGTGTCGGGGTCGCAGGTGGAGGTCAACGACATCAAGAACTCAtttgagagagGTAACGACCCCCTGATTGACGAGGAGAATAACCATGACATCAACTCGGTGGCCGGTGTGCTGAAGCTCTACTTCCGGGGGCTGGAGAACCCCCTCTTTCCCAAGGAAAGGTTCAACGACCTCATTTCCTGTGTCCGTATAGAGAGCCTGTATGACAGAGCTCAGTGTATTCGTAAGATTCTACTGGGTGTTCCACGGGCGACTCTGGTCGTGAATAGATACCTGTTCGCCTTCCTCAACCACTTATCCCAGTACAGCGATGAGAACATGATGGATGCTGGGAATCTGGCCATCGTCTTCGGCCCCACCCTGCTGCCCACGCCCGACGCCCTGGACCAGGTGGCCTGCCAGGCGCATGTTAATGAGGTCATCAAGACGGTCATCCTGCACCACGACAACATCTTCCCCGACCCCCCGGAGCTGCCTGGGCCCATCTATGAGAAGTGCATGACCGGAGACCAGTACTGCGAGAGTCCGTTCAGCGAGCCGGGTGGGGAGGCGGAGCCTGATGGCGGCACAGAGACTCAGACCAGTGAGGAGGagggggaAGCAGTAGAGGCAGTGGCCAGGTTTGACTATACGGGCCGGTCGGGGCGGGAGCTCTCCTTTAAGAAGGGAGTGACCCTGCAGCTGTTCCAGCGTGCATCACATGACTGGTGGGAGGGGCGACTCAACGGCACCCATGGCCTGGTGCCTCACCAGTACATAACACTGAAGGACAGGCCTGACTCTGCATCAACAGTGGACAGCGACAGTGGGAGCACTAGCAATGATGACAAGAGAGCCAGAAGTGAGCTGAGCTCTCCTACTGACAGACAGCCTGAGACCTACAACAGGTCAGTAGTTAGATCGCCAGAGACCTACAACAGTTCAGTAGTTAGATCGCCAGAGATCTACAACAGGTCAGTGGTTCGATCGCCAGAGACCTACAACAGGACAGTAGTTAGATCGCCAGAGACCTACAACAGCAGCCACCGCAGGAAGCGGACTGACATTTTCCGTCGCCCCCTCGGTCGCTCTAAAGACCATGGTAACGGGAGTGTGTTGGAGAGGAACTCGCCACCCGTCACTGGTCACTTCAGCCCGCGGGAGCTCCTTCTGGGGCGGGGCACTGGTTTAACCCCGCCTCTCGACAGCCCTGAGCGTCGTCGCCGTTCCACTGCCGCGGTAACGGTTACCGTGAGCCGCCACGATTCACTGCGTCGGCCTGAAGACACGCCCATCCGGCGCTCCAGCAGCGGGCAGCACGGCTTCAGCTCCAGAACCCTGGACCCAGACACACTGGCACAgGACATAGAGGAGAGTGTGAGTGTGGCTCTGGGGCAGCTGAGGCAGTTGGAGCGTGGGGGCTGCAGACCGGCTCCTGACGTGGTCCTggacactctggagcaggttaagaACAGCCCAATCACTGCCTGCTCCTCCGAGTCGCCCAGCCCCCACAGCACCCCCTCCACCCCAGGGACTCCTGGTACCCCTAGTCCCCTCAGCCCTCTGAGCCCCCTCATTCCCCTCCCTGGCCCCCCTCCCGCACCCATCCGATCTACCAACCCCTCCCCCGACACCCTGGGCTCCTTCAAGCCCGTAGTGGGGGCTCCTCTCCGTATGGGAGCTCCGCTTCGCCCCCCGGCCTTGAGGCCGAAACCCCTGGTGCCGCCCAAGAGCAACACCCCCCCTCTGCCCCCGCTGCTGGACAAGTCCTGCACCATGTGATGAGCCAAACCAGGTCAAAATAAAGAGTGGGAGAACAGGGTACCTGCTTACTGTTTAGAAACCTGAACAAGGGTAGAAAGTGGTAGGACAGATCTGAAACAAACGGTTTTTATGTAGTAATACAAAATAATATATGATCTATGATATGCCATGATATTTATGTGTGTCGTCAGGTTGGTGTGTACTCTCTTCTTGGTGTGTAGGAGTTAACGTTCTCCATGTATCAAAGCATTTATCAAAGGGTAGCTGTGTAAAATGGGACTGCTGAATGGGAGAAGTACAAGGAAAAAAAGTATAAGCTAAAGCAAGCAGAAACCCTATCCTGTAAAAGAGATGTAGTCACAGATGTGTGGGAAGTGTAGTTCTCCTCCAGTGAAATGTAGTTTCAGTGACGTGAACGTTGACTATGTAATGACAAAAGGCTCCTCAGCTAATGAAGGTCTATCACCAAAAGGCTGCTGTGTTCTTAGTGTATTTCGATTGGCTGCTGCATCTACGAGCGATTTTCATTGGCGACGCGAAAGAAAAGGACAATGCGGAGTGAAGATGGGTCAAGGGAGGCTCACACAGAATGGAAACATAAGGGCGGATGTCTGTGTgatctttttttaaattattttctaTTTCACTTCGTTCCGCTGCTAAGCTCACTAATGCCTCAACCGAAGCCTCTCGAGGCATTGGTGACAAAACTCACGTTCTATTTAACCAATGTTCAGCTATTTAATGAATGTTCCAGTATTTAACGACTGTTCAGCTCTCTATTGAATGTTCAGTGGGCAATAATGTCACAGGGGCCGGCAGCGGCGTTAACCCTCACTACTAGAAAACCGCCTTCTCGTGTTCAACCGATACACACACaggccaggtacacacacacaggccagggGAAATAGTTTGGAGGTACAGTGGTGGAGGGGGTTAGGAGTTTGTAGAGTACGTTTCCctcggcctgtgtgtgtgtgtgacttcttTCCCCTTACCCTGTTTGTCTGTGGGTGTTTCCTCTGCCTGCCCTCGTTCTGTTCCTTTGTAAGTGCGATGGTGGATAAAATGATGGATTATTCATGTTTGCCTTTAGTAACAGAACATGTGCAGGACAGGGGTGCGTGTTGCTGGCAGTTGGTGTGTTTGGGAATATGGTGTATCTGGTTGTGTTAGACTGAAGTCACTAAATAACCTTAAGTTCACAGTAAGCAAACAGGCTGTGGGGCTTTTGAGTGTAAATGCCCAAAATACACTTGGAACAGCAGCACACTGAATGTGTCCTCTTTACTGGGTTGGGAACTGTTGCGTGTGTGTTTGAGCAGTACTGGGGATGTGTGTCTTTAAGAATGGGCTATGGGCGTGCATCggtttgtgtgtgtcaatgtgaaagtgccttttttttttttaccctcgtcTTTGTGGGGAGTTTTATCCACTCGCGCATGTCCcgaacagagagcagcagcactTAGAATGAAATAATCTAAGCGTTTAGTAGAAGACTGAATTATGAATCCTAGAGTTAATCTATTGTGACATTGCACTTTGATATATTGGGGAAATTGTGTACTTGGCATGTAGCATTATAACATGTGAACAGGTGCATTTTAAGGGACGTTGGTTTCTCTCTGAATGTGTCTGATAATTAAAGGAAATGGTTTAGTCTGTTGCTGTATCTGAAACTCCTGAGCTTCCTAAAGACAAGCTCTTATACCCAAGTGGATAGTATTGATGTTGTGTTTATATGATAAATAAAAGGGAAGAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978794 lncRNA upstream 435682 31678478 ~ 31678731 (+) True G1727480
TU1978782 lncRNA upstream 455823 31658355 ~ 31658590 (+) True G1727468
TU1978739 lncRNA upstream 513277 31600791 ~ 31601136 (+) True G1727427
TU1978511 lncRNA upstream 546252 31567955 ~ 31568161 (+) True G1727224
TU1978502 lncRNA upstream 561624 31552493 ~ 31552789 (+) True G1727215
TU1979404 lncRNA downstream 52633 32197519 ~ 32220621 (+) True G1728051
TU1979406 lncRNA downstream 91435 32236321 ~ 32236640 (+) False G1728052
TU1979405 lncRNA downstream 91501 32236387 ~ 32239087 (+) False G1728052
TU1979407 lncRNA downstream 91501 32236387 ~ 32236640 (+) True G1728052
TU1979419 lncRNA downstream 95090 32239976 ~ 32240175 (+) True G1728064
XM_021577503.2 mRNA upstream 219869 31873548 ~ 31894544 (+) True LOC110500249
XM_036957656.1 mRNA upstream 314292 31745773 ~ 31800121 (+) False LOC110500247
XM_021577499.2 mRNA upstream 314292 31745781 ~ 31800121 (+) True LOC110500247
XM_021577495.2 mRNA upstream 377582 31692286 ~ 31736831 (+) False LOC110500244
XM_021577508.2 mRNA downstream 8230 32153116 ~ 32162456 (+) False LOC110500252
XM_021577509.2 mRNA downstream 23914 32168800 ~ 32180603 (+) True LOC110500253
XM_036957662.1 mRNA downstream 44656 32189542 ~ 32206591 (+) False LOC110501065
XM_036957661.1 mRNA downstream 44674 32189560 ~ 32217794 (+) True LOC110501065
XR_005038579.1 mRNA downstream 86262 32231148 ~ 32234741 (+) True LOC110500255
TU1978507 other upstream 549819 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 606041 31508056 ~ 31508372 (+) True G1727181
TU1978432 other upstream 664296 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 973323 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 1230800 30881843 ~ 30883613 (+) True LOC110500226
TU1979380 other downstream 13026 32157912 ~ 32162392 (+) True LOC110500252
TU1980944 other downstream 1176567 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1565206 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 3294403 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3896445 36041331 ~ 36042488 (+) True G1732735

Expression Profile