RNA id: NM_001160612.2



Basic Information


Item Value
RNA id NM_001160612.2
length 1260
RNA type mRNA
GC content 0.46
exon number 6
gene id arf4
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32250622 ~ 32254298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGACGTCATTTATTCCGCGTTGGCCTGGACGTGGCATCTGAAAAGACTGCGAAAGGAAAGCTGCACCCACTCTCTGTCTGGTTACAATAAACAGCTTTGGTTTTCTATTTAAGTATCGTCGCGGGGAGCTCTTTCACAACATGGGGCTAACAATTTCGTCGATATTTTCCAGGCTTTTTGGCAAAAAACAGATGAGGATACTTATGGTTGGTTTGGACGCTGCTGGAAAGACCACTATTCTCTACAAACTGAAGCTGGGGGAGATTGTAACCACTATTCCAACCATTGGTTTTAACGTGGAGACTGTTGAGTACAAGAACATTTGCTTCACCGTGTGGGATGTGGGCGGTCAGGACAAGATCCGACCCCTCTGGAGGCACTACTTCCAGAACACACAGGGCCTTATCTTCGTAGTGGACagcaacgacagagagagagtagcagaGTCGGCAGAAGAGCTGTCTAAAATGctgcaggaggatgagtTGAGGGAGGCAGTGTTGCTGGTGTTTGCAAACAAACAGGACCTGCCCAACGCTATGGCAGTGAGCGACCTCACAGACAAACTGGGCCTGCAGAGCTTGCGCAGCAGAGTTTGGCATGTCCAGGCTACCTGTGCTACCCAGGGCACTGGGCTATACGAAGGACTGGACTGGTTATCCAACGAGCTGTCGAAACGCTAAAGAATGGAGAAATCGCCGGACCGAAGCGAACGAGATATGAACACGCGAGCAAGAGTAGAAGGGGTGCAGGCTGAGCATTACATCAATGGAAAAAAACTGCAACTTTTTAAATTCAGTGTCTGTCTGGTAGAACTTGCAGTTATGGACTTTGCGATCAGTTCCTGTTCTGAAACCTTTTTTAATCATTCTTCCCTTTTATTCCCATTGTCATACATGCAGATGTTTTAGACTTCTTTTTGCCACCCAACTTCCTCAACAGTAAAATTGTTTTTAAGTTGCATGTTTTAAAAATACATAAAATAGATTCACATGATGGTTGTGTTCTGATGTTGATCATTGTGGAATGGAAGGGTGGGCCACTAGATTTTGTTGGGGGTGTATTGCGATACCGGGAGTTTGTTGGAAACGGTATCTGGAGCTGTTTCGGGTGTAAAACCCCTATGGCCTCCCCTGACTCAGTCATTCCAGAGATCTGAACCTGAAGGCCAGTTCCATTCCTAAACAATGTGAAGAGTGCAGGACCTTCAGTCATTTCAAAGGCCATTATGAtgcaataaaatgttatttttctttTC

Function


GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1979421 lncRNA upstream 5257 32244997 ~ 32245365 (+) True G1728066
TU1979420 lncRNA upstream 6321 32244012 ~ 32244301 (+) True G1728065
TU1979409 lncRNA upstream 7339 32241436 ~ 32243283 (+) True G1728054
TU1979419 lncRNA upstream 10447 32239976 ~ 32240175 (+) True G1728064
TU1979405 lncRNA upstream 11535 32236387 ~ 32239087 (+) False G1728052
TU1979427 lncRNA downstream 7528 32261826 ~ 32266171 (+) True G1728072
TU1979428 lncRNA downstream 10019 32264317 ~ 32314244 (+) True G1728073
TU1979466 lncRNA downstream 71300 32325598 ~ 32325890 (+) True G1728111
TU1979467 lncRNA downstream 71736 32326034 ~ 32326289 (+) True G1728112
TU1979469 lncRNA downstream 74484 32328782 ~ 32328996 (+) True G1728114
XR_005038579.1 mRNA upstream 15881 32231148 ~ 32234741 (+) True LOC110500255
XM_036957661.1 mRNA upstream 32828 32189560 ~ 32217794 (+) True LOC110501065
XM_036957662.1 mRNA upstream 44031 32189542 ~ 32206591 (+) False LOC110501065
XM_021577509.2 mRNA upstream 70019 32168800 ~ 32180603 (+) True LOC110500253
XM_021577508.2 mRNA upstream 88166 32153116 ~ 32162456 (+) False LOC110500252
NM_001160545.1 mRNA downstream 3182 32257480 ~ 32261475 (+) True vatf
XM_021577515.2 mRNA downstream 55745 32310043 ~ 32343558 (+) True LOC110500258
XM_021577516.2 mRNA downstream 111222 32365520 ~ 32391529 (+) False LOC110500259
XM_021577518.2 mRNA downstream 111223 32365521 ~ 32391528 (+) False LOC110500259
XM_021577519.2 mRNA downstream 111226 32365524 ~ 32395907 (+) True LOC110500259
TU1979380 other upstream 88230 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 113926 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 115623 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 686028 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 742250 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 1067155 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1455794 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 3184991 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3787033 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3978824 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile