Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001160545.1 |
| length | 1292 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 2 |
| gene id | vatf |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 32257480 ~ 32261475 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0060036 | notochord cell vacuolation | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0033180 | proton-transporting V-type ATPase, V1 domain | cellular_component |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | molecular_function |
| id | description |
|---|---|
| K02151 | ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1979421 | lncRNA | upstream | 12115 | 32244997 ~ 32245365 (+) | True | G1728066 |
| TU1979420 | lncRNA | upstream | 13179 | 32244012 ~ 32244301 (+) | True | G1728065 |
| TU1979409 | lncRNA | upstream | 14197 | 32241436 ~ 32243283 (+) | True | G1728054 |
| TU1979419 | lncRNA | upstream | 17305 | 32239976 ~ 32240175 (+) | True | G1728064 |
| TU1979407 | lncRNA | upstream | 20840 | 32236387 ~ 32236640 (+) | True | G1728052 |
| TU1979427 | lncRNA | downstream | 351 | 32261826 ~ 32266171 (+) | True | G1728072 |
| TU1979428 | lncRNA | downstream | 2842 | 32264317 ~ 32314244 (+) | True | G1728073 |
| TU1979466 | lncRNA | downstream | 64123 | 32325598 ~ 32325890 (+) | True | G1728111 |
| TU1979467 | lncRNA | downstream | 64559 | 32326034 ~ 32326289 (+) | True | G1728112 |
| TU1979469 | lncRNA | downstream | 67307 | 32328782 ~ 32328996 (+) | True | G1728114 |
| NM_001160612.2 | mRNA | upstream | 3182 | 32250622 ~ 32254298 (+) | True | arf4 |
| XR_005038579.1 | mRNA | upstream | 22739 | 32231148 ~ 32234741 (+) | True | LOC110500255 |
| XM_036957661.1 | mRNA | upstream | 39686 | 32189560 ~ 32217794 (+) | True | LOC110501065 |
| XM_036957662.1 | mRNA | upstream | 50889 | 32189542 ~ 32206591 (+) | False | LOC110501065 |
| XM_021577509.2 | mRNA | upstream | 76877 | 32168800 ~ 32180603 (+) | True | LOC110500253 |
| XM_021577515.2 | mRNA | downstream | 48568 | 32310043 ~ 32343558 (+) | True | LOC110500258 |
| XM_021577516.2 | mRNA | downstream | 104045 | 32365520 ~ 32391529 (+) | False | LOC110500259 |
| XM_021577518.2 | mRNA | downstream | 104046 | 32365521 ~ 32391528 (+) | False | LOC110500259 |
| XM_021577519.2 | mRNA | downstream | 104049 | 32365524 ~ 32395907 (+) | True | LOC110500259 |
| XM_021577522.2 | mRNA | downstream | 148397 | 32409872 ~ 32420565 (+) | False | LOC110500261 |
| TU1979380 | other | upstream | 95088 | 32157912 ~ 32162392 (+) | True | LOC110500252 |
| TU1979348 | other | upstream | 120784 | 32135955 ~ 32136696 (+) | False | LOC110501063 |
| TU1979347 | other | upstream | 122481 | 32114736 ~ 32134999 (+) | False | LOC110501063 |
| TU1978507 | other | upstream | 692886 | 31564135 ~ 31564594 (+) | True | G1727220 |
| TU1978468 | other | upstream | 749108 | 31508056 ~ 31508372 (+) | True | G1727181 |
| TU1980944 | other | downstream | 1059978 | 33321453 ~ 33321761 (+) | True | G1729465 |
| TU1981477 | other | downstream | 1448617 | 33710092 ~ 33868977 (+) | False | LOC110500285 |
| TU1983724 | other | downstream | 3177814 | 35439289 ~ 35484354 (+) | True | G1732028 |
| TU1984485 | other | downstream | 3779856 | 36041331 ~ 36042488 (+) | True | G1732735 |
| TU1984576 | other | downstream | 3971647 | 36233122 ~ 36236265 (+) | True | LOC110500325 |
