RNA id: XM_021577515.2


Basic Information

Item Value
RNA id XM_021577515.2
length 3273
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110500258
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32310043 ~ 32343558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAATTAAGCACGTGATAGTCCCTCagcatccagagagagagggagagagatgtacagAGACGGACAAAAGTGAGGacgaaaaaaagaaagagagagagagagaaaatagagagagacaaagagagagagagagagagagagagagagagagggaaagagagagagagaaaaagaaagaaagaaagaaagagagagtgagacagagatacatttagagagtgagaggagagagtttGTGAGTTCTAGCACACTCTCTGTGGCTGAGTCGTTGAAGAGGGAGACGATGTGGGCTCAGTCACGTTGTGTCATATCATAAATGTGAAGGCAGGGGACAAGTTTCTGACAGCACAGTCATGGAATTTCCCTTCAGACAGATGGCTCATCAATAGTAAAACTCTGCACAGTTGCAGCGCAGGAGGAGATGGACTAGTGTGAGTGTGCGGCGGAGCGAGGGTGAAAACAGCTGTTGACTGACAGTTTTGTGGAGCTGAGAGAAGGAAAGCAGCGGAGCAGACAACATCAGGGCTGACTGAGACAGTTTGGACTGGGAACCTCGGAGTGACAGGGGTAACAGGACTGATAGACTTCATGGGGTCAAAGGCTTGATGTTGATGTGTGATCTGTGATGTCACTCAGGGAGATGAGCATGACTGAAGAGTCATCTCTGTAAAACATGGCTGTCACGGGTCTCAGCGAGGCGAAGCAGttggctgacacacacacgctaaaCACACTGCGTCTAGAACCAGTGGTCAGGACACACATCACGCTCTGCGCATCTCCCGGCCTCACTTCATGAAGATGTTAACTTCAGAGCGACAGTGCAGCCCGGGGCCTCCATAATCGACATGGTCAACGTGACGACGTCACCCAGCAGCAATGCCACCCCAGAGGGTCTGACTGAGGGGGGGCTGGTGGTCCTGGGCCAGAGGGAAGAGTATGATTACAATTACTTTGCCCTGGTGCTGGGCGTGCCCCTCATCCTGATCATCATCCTGGGCAACGTACTTGTGTGTCTGAGCGTGCTCACTGAGCGCTCCCTGAAGACTGCCACCAACTACTTCATCATCAGCCTGTCTGTGGCCGACCTACTGCTGGCTGTACTGGTGCTGCCCCTCTACGTCTACTCTGAGTTCCTGGGTGGTATCTGGACCCTGAGCACATACATCTGTGATGCTCTGATGACCATGGACGTCATGTTGTGCACTGCCTCCATCCTCAACCTATGTGCCATCAGTGTGGACAGGTACATAGCGGTGGTGGTGCCCCTGAAGTACAACAGGAACCAGTTCAGCCTGCGGCAGCTGGTCCTCATTACGGCCACCTGGGTTCTCTCCCTGGGCGTCGCCAGTCCTGTCATCTTCGGCCTCAACCAGGTGCCGGGCCGCGACCCCACCGTGTGCAAGCTGGAGAACGACAGCTTCGTGGTCTACTCCTCAGTGTGCTCCTTCTTTGTGCCTTGCCCAGTCATGCTCTTCCTGTACTACTGGATGTTCCGGGGATTGAGACGCTGGAGCTCAGGCAGGAGGCGCTCCCAGCTGACGAGGGGAGGAAAACGGGGCCTGTCCCTGCACCTCTGCTCCGCCCTGCAGAGGGAGAACGCAGGGGTCAGGGCGGGGGCCAAGGAGAAGGTGGTGTACCTCATGCCCTCAGGGCTCAGCCCAATGTCACCGTCGACCGTATCGATGCCGTCGCCCACAGCGACCCCGGGGGTGGAGGGCAAGCAGCAGGATGGTGTGGGGGCTGGCATGGCGGAGAGCGACCCCATGACTACCCAGATAGAAAGCGTTTCGGACGCGGACCCCACGGAGAAGCCGCCTAGGCAGGGGAGGAGCCGGAAGGAGAATGGGCTGGCCCACGCTAAGGCCACCAAGAGGGGGCGCCGCAACAGCAAGAGTAgcagagtgagtgggagggagcgAAAAGCCATGAAGGTCCTTCCTGTTGTAGttgGTGTGTTCCTAGCCTGTTGGACGCCTTTCTTTGTGGTACATGTGACCAACGTGCTGTGCGTGTCCTGCAAAATCAGCCCTACTCTGATCTCCGTGGTAACGTGGCTGGGCTACGTCAACAGTGCTGTCAACCCCATCATCTACACTGCCTTCAACGCAGAGTTCCGGAATGTCTTTCACAAACTTTTCTGCTGTCGAGCATGAGGCCTGAGTTCTGGAACCTCTTTGACAAACTATTCATTGAGATAGAAGAACAACTTTCTTTCAGGTTCAATCTGAGACCTGAATTGTAGAATGTTGCACTCGGCCATGAGACCTGAATTAAATTATCTTTCACAAAACTCCTCGGTTGATGGATGTGAGAGTGACTTCCTTACCCAAAGGGGTTTTCCTGGATCTAAGTGCTGGCAGAAGGTGAGGTTGTCAAAATGGATGAACCATAACAGGGGACAACCTGACAAAATTCGACGGATGCCTTAGTTGACATATTGTGAACTGAAAGACAGTGGCTCACTGTATCTGATGTTTCTACATTGAAGTTGATACTGTGTGACGGTTTTTCGTCCTGTAAAATATTGCTTGGATAAAGAAGATGGTGAATGCTGTTAATATCATAGCCCAAAGGCATAAAATCTGTGAACAATGTGCACACTTAAGATCACGTAACTATTTGATATGTGAGTTTTGATTTCTCTCAGAATTAAATGTTAATGCTATGTATGGTTCTCTGTTTTGATTTAATAATGTGCAGGTTTTCTGTGAAATTTGGTATTGGTATTTTCTTTATAATATACTTTGTCTCCTTTTATCCTGAGGACGTGGGAGACTTAAGGGACGTAGTGTGGCTCAAGAGGAACTTACATTATATAACAAACATTACATATTCTATCTTGTGGACATTGCCTGTAGATAAATATCATGAACATTTACGCCACAAGAAGTGACAAATTACAGACTTCAAGGGACAACATTGTGGAAACAACTATTTAAGATGATATCATTCCGTAAAGTTATACTTTGACCTATTTTGATCAAGTGCTTACAAAAGTGCTGTGAATTAACTGAGGTGAATGTGACAAATGTAAACAATTCTCTTTGTCGTTGATCGAAAAGTAATAAAACATGTTCCACATAATATGAATGCCGTATTTCCCCTATGTAAGAAACCGAGAACACTCGTCACAATCAGAATGGAATCATTTGAAATGACAGAGATACAATCTATTTTTCCATGTCACTGAGAGCGATATGGAATGTTGGTCGATCCCCTCATGTCAACACAAGCCACCGAAGACACTGCCGTATCACACCCACAGGAA

Function

GO:

id name namespace
GO:0007195 adenylate cyclase-inhibiting dopamine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K04145 DRD2; dopamine receptor D2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979427 lncRNA upstream 43872 32261826 ~ 32266171 (+) True G1728072
TU1979421 lncRNA upstream 64678 32244997 ~ 32245365 (+) True G1728066
TU1979420 lncRNA upstream 65742 32244012 ~ 32244301 (+) True G1728065
TU1979409 lncRNA upstream 66760 32241436 ~ 32243283 (+) True G1728054
TU1979419 lncRNA upstream 69868 32239976 ~ 32240175 (+) True G1728064
TU1979486 lncRNA downstream 9068 32352626 ~ 32352910 (+) True G1728131
TU1979489 lncRNA downstream 10478 32354036 ~ 32356561 (+) True G1728132
TU1979562 lncRNA downstream 114734 32458292 ~ 32459809 (+) False G1728188
TU1979563 lncRNA downstream 114734 32458292 ~ 32462718 (+) True G1728188
TU1979566 lncRNA downstream 121644 32465202 ~ 32468500 (+) True G1728191
NM_001160545.1 mRNA upstream 48568 32257480 ~ 32261475 (+) True vatf
NM_001160612.2 mRNA upstream 55745 32250622 ~ 32254298 (+) True arf4
XR_005038579.1 mRNA upstream 75302 32231148 ~ 32234741 (+) True LOC110500255
XM_036957661.1 mRNA upstream 92249 32189560 ~ 32217794 (+) True LOC110501065
XM_036957662.1 mRNA upstream 103452 32189542 ~ 32206591 (+) False LOC110501065
XM_021577516.2 mRNA downstream 21962 32365520 ~ 32391529 (+) False LOC110500259
XM_021577518.2 mRNA downstream 21963 32365521 ~ 32391528 (+) False LOC110500259
XM_021577519.2 mRNA downstream 21966 32365524 ~ 32395907 (+) True LOC110500259
XM_021577522.2 mRNA downstream 66314 32409872 ~ 32420565 (+) False LOC110500261
XM_021577521.2 mRNA downstream 66317 32409875 ~ 32420565 (+) True LOC110500261
TU1979380 other upstream 147651 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 173347 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 175044 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 745449 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 801671 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 977895 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1366534 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 3095731 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3697773 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3889564 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile