RNA id: XM_021577519.2


Basic Information

Item Value
RNA id XM_021577519.2
length 5386
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110500259
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32365520 ~ 32395907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTAGCAGCACAGCCAGCGTTGTTCTCGGtttaacctccctctctcttaacTGCTGTACTGAATGGCTATCCTGTCCTGGAAATGCCAGCTAAGCCCCCAGTCTGTGCTCTACGCAGGAGCTCTTAATGCtctcttccaacacacacacctccctctttctctccctctctctctctctttctgccacgCTCCCACGCTTGGGGAACAAGGCTCAACCGGTGGTGGTGGGAGAACCGGGACTGGAGTGTTTAGTGCTGTCGTCACTGCTCTTGATTGTTTGACCCTGGGAGAAAGTTCTGCCACAGGGGGAAATATGTGTCTGAAACCGAGGGGCTGGAACAGACAGAATAGGAGAGGGATACCACGAGCGTGAGAGCCTCGGCTCAGGCTTTGACCATTCAGCTACCGGACGCCAGTGTGGCTGAGAGACTGGAGGCTCAGGAGGCCAGAGGAAGATGTTGAACCCATGGGGGTTGTTCCTCTGCCAGCTGGTAATAAACACGTCCTACCATGTCATCAAAGCCAGCCTCTGCCTGGGTGGGTCGGACATCTTTGCAACGGTGAGCGAGAACAGCCCCGTAGGAGAGTTCATAGCGAACCTCAGCATCATCGGAGACCCTACAGGAGTCAATAGCATTCGCTTGTGCCTCACCGGAGAGAATGCCAATTGGTTCTACCTTGAAGGGAGAACCATCAGGCTAAACTCATCCGTTTTAAGAGTCCTGGATCGAGAGCTTTTTCTCTCCAAGCGCCAGGGATCTGTATTGATGGCAGCATTAACATGTTATGAAGATGACATAATACAGAGTGAATACAGGGTCATAGTTGAGATCCTGAATGAAAACGACAACAAACCAAAGTTCTTTGAGAAGACTATACAACCACGTTACATAAGTGAGCTCACTGCAGTCAACTCTGTAGTCTTCACTGTCAAGGCCATCGATGCTGATGGAGACACCATCACCTACATCATCGACAGAGCCTTGCCTGATGCCAGCTATTTCAGGATAGACCTACCCAACAGTGGTAAAGTGATCCTGGACAAGCCATTGGACTATGAGACCAAAACCCAGCTGCAGCTAGTCATCTACGCTGTGGAAACCAACACCAAGGAGTGGTACAACACTTCCGCCTCTCTGACTGTGCACGTGAAGGACGGGGACGACCAGTACCCTCAGTTCCTACCGTGCACACCCATCTCCCAGGACAACAAACACACGGTTGTCTGCACCAATCCCGTCTACACAGTCAACATCACAGAAAAGGACCAGGACATGTTACTGAATTTCTCTCCTGGTCCAATTCATGCCGAAGATGGAGACAGAAGCCTTGATACGCCTTTGCTCTACTCCATTCTCTCAGGTGCTGACAAAAACAGGTTTCAGATTGACAACCGAACAGCAGAGATCACATTGACTAGACGGGTGGAAAACAGACACATGACACCTACATTCCGACTACGCATCATGGCATCTCAGCTGAATGACCCAAAGAAGTACAGTGTGGCGACAGCGCTGGTCCGGGTGCTAGCAGAGAACCGGTTCCCTCCCCTCTTCAACAGAACCACGTACAAGGGCTTCATCGTCGAGAACTCCAGTCCTGCCACGCTAGTCTCCACCTATGGGAACGAGGTGCTTCTCATCCAAGCCATTGACCAGGACTTTGTAGATGGGGTGAATCCAAAAATGCATTACTCTCTCCCGCCCACATCAGCCACAACTGCACTGTACCACATCACCCAGGAAGGGGTTATCATCGCTAAGACCGACCGCCTACGACCCTTCGAGAGGCACTTCCTAGAGGTGGTCGCTATGGATGAGGAATCAGGTGAGGTTGCAAAAGCCTCAGTCGACATAGAGCTGCTACAAAGAGGCCAGCCAGTTCCACGGACACCTTTCGGAGAAGAGCGGTTGTTCAGAGACCTGGATGTGAGGATGGCTGGCGGTATCATGGGTGGGATGCTGCTGCTGTTAGTGGCCATCCTGTTCCTGCTGATCCGATGGGCCAAGAGGAGACGGAGACGGGACCCGGCCAGACGAGGGGCTGTCATCCTGGGGAAGCACCCCAATGTGgATTTGCATGAGCCCTGTCATCCTCTCCAGGCTCCTTAGAGAGGGAGAACACACATCACTCACACCACTCTGGACATCAATCACACATCCACAGACTGGACTGCTTTTAATTGTGATTCATTATCAGTTATTATGTCTGtatgacatgtactgtatatactgtagtactatcTCTTTAGAAGCACTGTTGCCTTTAGAGATGTTAGTACTGCAAGACATTAGACATTAGTACTGTAAGTACACCCATTGGCTCGTCTCGCTCGCTGCTGTATTGCCATCTAGTGTCTTGCCCCAGGGGGCCCTTCATAGTGTCGAGTTTCAGGAGAAGATGCTGGAGTTTGTCCTTTTTCAGAGAGAGATCTATcagagaaaataaaataatacattaaCTTTAGCTAAACGCAAACCAAACATTAACTAGGTCTACATTTTGAAGAATAATTTTGCATCCTAGACAGTGAAAGGCCTATTTCTTAGGGTCATGCTCTGATCACTACCACATGCTGTGAAAAACATGATTCAGGTACATTAGTATCAACAAATCCACCCAGTTCATTTCCCCTTCTCCCTGTCAAAGACCTATGACATTTCCCTCTGACCACTGACCTTTGACATGGCGTTCCTTCTGGGCCCTGAGATGGGAACCGGCCTGCTGTTTGAGATGGAGTAGGTACTCATGGCTGCTGGGGGGAGTGTTGGAACTGGAGGGCCctacatcattatcatcatcattccCTTTGGTGCTATAGCCCTCTATGAAAAGACAAATCCTTCCACTCAAGTGATGTTTTGTCTTGCCTCAAGAACATCCTGGTTAGCGGGTTTTTGACTGAACAGGGCCCTCAGTCAAGAGATACTCTTCAACGCAATCTAGTGTTTGGAATGTAAGGAGTGTCTCACCATGATCAATGGACAGGAAGTTATCATCGATGACCTCATAATTCTCTGCCCTTTGGCTTTTGCTGTGATTGGTGGAGGGGACATTTACAGGTGTGCTCGGACCTATACTTGAGAGATGTAAAAATCTGCCCTGAGACAGAGGCAATACCCAAAGATAATCATCTGCTTTTGACAGTTGTTAGCCCTAAATTAACATGACGTAATCCATTCAATCATCACGCGCCTGCAGTCTTTTTTGGACCTATCATTTGTTACACAAATGCTCTCTTTTTTACCAGGGTTGAGATTGTTCTCCCTAGGCTGTGATGGCGGGGTAACATTCCTTGACACCAGCCCTTTCTCCACGTACTGAGGAACATTGCTTATCACCCTCTCGGTGGAACATCTGCAAAAACACAATAAACCATAGTGTTGCGCTCATAAGCCAGTTATCCAATTAGTGGCAGAAGAAAAACAACATATAAAAGACAAAGCAAGTCAAgccatggctgtgatgttgggtGTTGGCTGTAATAGAAGGCTACAAACTACAAAACAAATAAACAGTTGGCTGTGATTTAGTATTCTACTGTAGTCGGCCTGTGTATTGTGCCAGTAACTGCAATGCAGTTACATGGTAACAGGTACACTCAGCAAATACACTCATTTTGCATCTACACTGCCTCCACAATTTCTTTCAAACATTCAGCAGGGGGTCTACTACCTTGAAGAATTCAAAGAGTTCTGCTCGGAGGCAGAGACAAGGTCCTCTCTTCCTGTTTTGATCCACTCCCCATGAAATGATGCCTAGATATGGGGAAAGTGTTAGAGAAAGAAATTAAAAACAGCATGCTGGTGAATTCAATGGATCACATTTCAATTATTTTACTCACCATAGTCAAAATTAGGTCAACTCTAGTACACTATGGTATCACAGACTTGCATTCACTTCATTTACTGATGTTTAGAGGACAGAAAGAGCCCGTGCAGGTTATTCCACATATCCCTTCCAAAGGTCATGGCTGAGATGAGACATATGGACATTAGTGAGAGATGACAAACAAGAGCACGTAGAAAACCATTTTAAAGTAGACGTATGGATCAATGCACATTTCCGCAATTGTTAGTTCACAATGGGCAGTTGCCATGGGGATAGAATATCAAAACATTCAAGGTGAAATCAAAAACTTCAGACCTGAAAAGATTTGGGGGTACATAATGTTTCCTGCTATAATTATATGTGTATGGAACCACTTGTTGAAGTGGACGGATGAATAATGGCTACAATGCCTCCTATCGACTATATCATCAACCATTACCGTTCTCCTAGCAGCAGGATAATATGGATAATAAGGATAACACATTCCCACCACTAACGTGTCAATACTATCTCACAATTTCTACTTATTATAGACATTTGTAGATACCTAAGTAAACATTTCTAGAGAATGTCGAAACATTTACAGACACTGAGGCGAGGTTTAGCATGTCTTTGCAGGGAGACTGAATGTGTTGCCATTATAATAGCCTATGGAAGCCCATTCTCCCCCATCATTTTATTTTTAATGTCAATACTATCTCATAGCATTTGTTTCTTCATTTGTAACATTTTGTGATTACATTGGGGGGTTCAACCTGTCAACTATCAGCTAATCATGAGTCTTGTCAgataatcatcaagcccttgattgGGTGAATCAGGTGAACTAATTCAGGGCTAAAACAAAATTGTGAAACGTCTGGGTGTCCCCGAGGAGGTGTTTTAGATGCACTGGGCTAACCTAATCAGGTTAAACTCCAGACCCTAGTTGGAGGGTATGACATAAAATGGTTTTATATGGGCTATGATGAGACCATATTCTTTCTAATTAAGTCATatggtaaaaataaataatagacAACTGCAATTGGACAATAGAACTAACAGGGGCGTGTTTGCTTTATGCAGGGTTGCATCATGTTGGCCTTTGCatctgtaatacattttaaaaaaggttACTCACACAGTATGTCAACACTATTGTGTTAATTGATTCATTCCAGTCAATAATTGTGGATTGAAGGTCTAGGTAGCCTAGCCACCTGAAATTTGAATATTAACcaaatttgatcacattcacattttctcttAACACAAATAAATAGGACCATTTTAGGCTATAAATACACAGCTTAGGCTACAAATACATGACGTTACTGGTTATTTTCCCCTGGCCAGAGGGGATTAGCGCTTAATAGGCTTCTCTacctgcagctgtggttgttatcAGTAGGCTACCGTTGATCAGACTGAAGAAAAGATAAATTGTGCACGAGTTGACAAATCATGATGCAAATCAGTCTAAACAACTTTACTTTGTCcctattttcttttcttttttggaattttacccctttttctccccaatttcatggtatccaattgttagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979489 lncRNA upstream 8963 32354036 ~ 32356561 (+) True G1728132
TU1979486 lncRNA upstream 12614 32352626 ~ 32352910 (+) True G1728131
TU1979470 lncRNA upstream 35962 32329294 ~ 32329562 (+) True G1728115
TU1979469 lncRNA upstream 36528 32328782 ~ 32328996 (+) True G1728114
TU1979467 lncRNA upstream 39235 32326034 ~ 32326289 (+) True G1728112
TU1979562 lncRNA downstream 62385 32458292 ~ 32459809 (+) False G1728188
TU1979563 lncRNA downstream 62385 32458292 ~ 32462718 (+) True G1728188
TU1979566 lncRNA downstream 69295 32465202 ~ 32468500 (+) True G1728191
TU1979543 lncRNA downstream 98703 32494610 ~ 32495559 (+) True G1728170
TU1979630 lncRNA downstream 248887 32644794 ~ 32645016 (+) True G1728252
XM_021577515.2 mRNA upstream 21966 32310043 ~ 32343558 (+) True LOC110500258
NM_001160545.1 mRNA upstream 104049 32257480 ~ 32261475 (+) True vatf
NM_001160612.2 mRNA upstream 111226 32250622 ~ 32254298 (+) True arf4
XR_005038579.1 mRNA upstream 130783 32231148 ~ 32234741 (+) True LOC110500255
XM_036957661.1 mRNA upstream 147730 32189560 ~ 32217794 (+) True LOC110501065
XM_021577522.2 mRNA downstream 13965 32409872 ~ 32420565 (+) False LOC110500261
XM_021577521.2 mRNA downstream 13968 32409875 ~ 32420565 (+) True LOC110500261
NM_001124321.1 mRNA downstream 60214 32456121 ~ 32458130 (+) True LOC100135983
XM_036957669.1 mRNA downstream 78074 32473981 ~ 32494341 (+) False LOC110500263
XM_036957670.1 mRNA downstream 78074 32473981 ~ 32494341 (+) False LOC110500263
TU1979380 other upstream 203132 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 228828 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 230525 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 800930 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 857152 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 925546 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1314185 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 3043382 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3645424 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3837215 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile