RNA id: XM_036957672.1


Basic Information

Item Value
RNA id XM_036957672.1
length 5434
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC110500263
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32473981 ~ 32494341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCTACATTTCCTTTCAGGCAGATTATTTGGTGCCTAATCCAAGGGGTCCTTTGCCGCACAAGGAAATCATTTTTACTTATCAACACAAGTCCGATGTTTATTTTGAGAGAAATCGAAGAATGCTTGCTGAGGGCAAGAGATCATTAAACATGGATGAGAAAGAGGTGAGCTCCTTTAGTAacaaggagaaagacagagagggtgatAGACGGCCCGCCTCCTCCCGGGATAAAGTGAAGGATGAGGCAAAGATGAGTGGCAAGAAAGATATCGGTAAGGCcgcagaggaaaagaggaggagactTGAGGAGGACAAAAGAAAGAAGGAAGAAAAGGAGCGGAAacggaaagaggaggagaaacagaaggcagaggaggagcagaggatgaaggaggaagaggagaagaaacagcaggaggagcaggagaggaaaGTTCAGGAGGAGGAGGCCAAGAGACAGCGTGAAGAGGAGGCAGCTCAACTCAAGGAGAAGGAAGAGGGTCACCAGCTCCACCAGGAGGCCTGGGAGCGCCACCAGTGCCGGAAGGAGCTGCGCATCCGCAATCAGAACGCCCACGAGGGCCGTCCCGAGGAAACCTTCTTTAGCCGCCTTGACTCCAGCTTGAAGAAGAACACGGCCTTCGTCAAGAAGCTGCGCACGCTCACTGAGCAGCAGCGTGAAGCCCTCTCCAATGACTTCGGCTCGCTCAACCTCAGCAAGTACATCGGCGAGGCGGTGGGCTCAGTGGTGGAGGCCAAGCTGAAGATCTCTGATGTGGGCTGCGCTGTGCACCTGTGCTCCCTCTTTCACCAGCGCTACGCTGAATTCGCCCCATTGCTCCTCCAGGCCTGGAAGAGGCACTTTGAGGCGCGCAAGGAGGAGAAGGCGCCCAACGTGAGCAAGCTGCGCACCGACCTGCGCTTCATCGCAGAGCTTACCATCGTGGGCCTGTTTACGGACAAGGAGGGCCTTTCGCTCATCTACGAGCAGCTGAAGAGCATCATTGGAACAGACCGCGAGACACACACGCATGTGTCGGTGGTCATCAGCTTCTGTAAGCACTGCGGGGACGACATTGCGGGCCTGGTGCCTCGCAAAGTGAAGGCTGCACAGGAGAAGTTTGGCCTGGCCTTCCCTCCCAGTGAGATCATCAACACGGAGAAGCAGCAGCCCTTCCAGAACCTTCTGAGGGAGTACTTCACCTCGCTCACCAAGCACCTGAAGAAGGACCACCGCGAGTTGCAGAACATCGAGAGGCAGAACAGGCGTATCCTCCACTCCAAAGGGGAGCTGAGTGAGGACAGACACAAGCAGTATGAGGAGTTTGCTACATCCTACCAGAAGTTGCTGGCTAACACCCAGTCTCTGGCTGACTTTCTGGATGAGAACATGCCAGAACTTCCACTGGACAAGACTGTGCAGGAAGAGCACGGTCCTGGCATTGACATCTTCACCCCTGGGAAGCCCGGGGAGTATGACCTGGAGGGGGGCATCTGGGAGGACGAGGATGCCAGGAACTTCTATGAGAACATGGTGGACCTGAAGGCCTTCGTCCCCGCCATCCTGTTCAAAGATAACGAGAAGGGCAAGGACAAAGAAGAGGCTGCTGGTAAAGAGGCTAAAGATGCTGCGGCCACCACAGAGGAGTTGGAGTTGGAGCTCGAGTCTCTAGACATCGCTGATGACCCTCTGGAGCTGGATGGACCTGACGAGGCAGAGAACGAGGCAGAGCTTGCCAAAAAACTATTGGACGAGCAAGGTAAAGATGAAGAACAAGAGGATGAGGAGGCAAGCACCGGGTCCCACCTGAAGCTCATCGTGGACGCCTTCATCCAGCAGCTTCCCAACTGCGTCAACAGAGACCTCATAGACAAGGCTGCCATGGATTTCTGCATGAACATGAACACCAAGTCAAACAGGAGGAAGCTGGTCCGGGCTCTCTTCACCGTTCCCAGACAAAGGTTGGATCTGCTGCCATTTTACTCCCGTCTGGTGGCCACCCTTCACCCCTGCATGTCAGATGTGGCCGATGACCTGTGCTCTATACTCAAAGGAGACTTCAGGTTCCATATCCGGAAGAAGGACCAGATCAACATTGAAACCAAAAATAAAACTGTACGGTTTATCGGGGAGCTGGCGAAGTTCAAGCTGTTCTCTAAAACGGACACTCTGCATTGTCTGAAGATGCTGCTGTCAGACTTCTCCCACCACCACATAGAGATGGCCTGCACTCTGCTGGAGACCAGTGGACGCTTCCTCTTCCGATCCCCCGACTCCCACCTCCGGACCAGCGTCCTTctgGAGCAAATGATGCGTAAGAAGCAGGCGCAGCACCTGGATGCTCGCTACGTGACCATGGTGGAGAATGCCTACTACTACTGCAACCCCCCGCCCATGGAGAAGACTGTCAGGAAGAAGAGGCCCCCGCTGCAAGAGTACATCCGCAAACTGCTCTACAAGGACCTCTCCAAGGTCACCACGGAGAAGGTGTTGAGGCAGATGCGTAAACTCCCCTGGCAGGACCCAGAGTCTAAAGGCTACCTGATCTGTTGCATGGTCAACATCTGGAACATCAAGTACAACAGCATCCACTGTGTGGCCAACCTGCTGGCCGGCCTTGTGGCCTACCAGGAGGACGTGGGCATCCACGTGGTGGATGGGGTCCTGGAGGACATCCGCCTGGGAATGGAGGTGAACCAGCCCAAGTTCAACCAGCGTCGGATCAGCAGTGCCAAGTTTCTGGGGGAGCTCTACAACTACCGCATGGTGGAGTCAGCGGTCATCTTCCGCaccctcttctccttcatctcgTTCGGCGTGAACCCGGACGGCAGCCCCAGCCCCCTGGATCCCCCCGAGCACCTGTTCCGCATCCGCATGGTCTGCACCCTGCTTGACACCTGCGGACAGTACTTTGACCGCGGCTCCAGCAAGAGGAAGCTGGACTGCTTCCTCATCTACTTCCAGAGGTATATCTGGTGGAAGAAGAGTGTGGAGGTGTGGAGTGCGGAGCACCAGTTCCCCATCGACATTGACTACATGATCAGTGACACCCTGGAGCTTCTCCGGCCCAAGATGAAGCTCTGCATCTCCCTGGAAGACTCCACACGACACGTCACCGAGTTGGAGAGGGAGTTCCTCGTTAAACTGGGACTGGCCATGGATGGACAGAAGGACGGCCGGCCCTCCAGTGCCATGGGGAGTGAAGGCGAGGCCCTAGACGAGGATGACGAGGATGACGACGAAGAGGGAGGGGCGGACACAGAGGAACAGTCTGGCAATGAGAGCGAGATGAACGAGCCAGAGGAAGAAGAAGGGTCTGAGAATGAGGAAGAGGagcgggaggaagaggaggaggagaacactgactatctgactgactccAACAAGGAGAACGAGACGGACGAGGAGAACAATGAGGTGACCATCCGTGGTGGCGGTCTGAAGCATGTGGCATGTGCTGAGGATGAGGACTTCATCCAGGCTCTGGACAAGATGATGCTGGAGAACCTGCAGCAGCGGAGCGGGGAGGCAGTGAAGGTGCACCAGTTGGACGTGGCCATCCCCCTGCAGCTGAAGAGCCAGCTGAAGAAAGGCCCTGGAGGACCCGTCTGCTctggagagggagacggaggcaTCTCAGACACCATGCAGTTTGTCATGCTCACGCGCAAGGGCAACAAACAGCAGTTTAAGATCCTGAACGTGCCTTTATCCTCCCACCTGGCTGCCAACCACTTCAACCAGCAGCAggcagagcaggaggagaggatgaggatgaagaagCTCACTCTGGACATCAACGAGAGACAGGAGCAAGAAGACTACCAAGAAATGATGGCGTCTCTGGCCCAGCGGCCCGCTCCTGCCAACACCAACCGGGAGCGGCGCCCGCGCTACCAACACCCCAAAGGGGCACCCAACGCCGACCTCATCTTCAAGACCGGAGGAAGATGCTGATTGGAGTCTGGCCGAGGGAGCAAGCAAATGAGAGAGCAAGACAGGGCGAGCGGACCATCGGTCTCGCCTGAGCAGGGAGTGAGTCCGCCAGCCGCCCACTGACGCAAGCGCAGACCCCCACACCTAACCCCGCCGccggaggaagagaaggagaaagggcaTCAACGAGGGGTGGGGAAGAGGGGGGCACCCCCTTCAGCCAGCTAAGGCGTTCCAGAGAACACCCCTTCCTTTCTGTGCGTCGCCCGGGACGACACCAGCACAGCAGCACAAACACCCACCCCGCCTGAACAAAAGAACGAATCAAAAGATGAACGATTGACCAGCTGTCGGACGTATGTACGGGCAGACATGGACGCAGACAAACAGACGCACGGACAGCTGGGCTGCAGGACAAGGGACTACAGTCGTCTTCTCTTCGCTCCCGTGCAGGATGAGGATATGGTGTACAAGGGCTCACAAGAGGAGGACAATGGACAGAATGTGTCAAAGCAAAGGGGACGGGTGAGGGTGTAACATCTTTGGAGATGAACTGTGCTTCTCTTACTGGGAACAGGTCTgttgttcagtcttttttttctctttatcTAGCTAAATCACACACTGTTCAAAGGCAGcttgatggaggaggaggagagggagcacAGATGGGGTCACCACTACTAAATGACTCAATAAACAAGGGAACAAGGAGGACAGGATGATGTACAGAAAGGCGTGGTTGCTTGTGTGAGCAAtggttacagatgtaggatcttcatttgagtcagtttgctacagcaggacaataatcctgcagcaacaggaaatgtgaattattatgatTAACAGACTTtttggttgatacatttttgtaAAGTTGAAATTAAAatcttcagaagcctttttaaacctcatgAACTACACGTtttaaaatgtcctgcattgcaggaaagtaaGTTGTCctgaaacagggtgatcaaattaaggtcctacatctgtaccaTAGAGATGGTTTGCTCCTCCTAACCCTGTTGGAAGTGGAACACCTTGTCACGGTGACGACCCTGACCCCGAGGCTGTTACAAGACCAGGGTTGACTGACCAGCGTTTCATCatcagaaataaaaaataaaatataagtgATGAATATAATACATATTCTTTATTTTTTCAGCATTTTTGCTTTCTAgatgtttcctttattttcaTGAAAAATCTATACTTTTTTGGGGTGATATACAGTTTGttgatttggaatttgtctgctgTATTGTAGTTTTTGACAAATGGATAAGATACTGTGGATAAGATCTGTGCTCTTGCCTCCTGAGTCATACTCAGTGATGATAATTTCTGTTTGATTATTTCTGTCTGTTGAATATATAGATAGATAatctgtactgtactgcatgGGCTTTTCTGCACCAGCTCTGTAAGCCGATTTCTGCCTGTGTTTCAGTAAAAGTGTCAGTTTGTGACTCACTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979566 lncRNA upstream 5481 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 11263 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 14172 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 117420 32354036 ~ 32356561 (+) True G1728132
TU1979486 lncRNA upstream 121071 32352626 ~ 32352910 (+) True G1728131
TU1979543 lncRNA downstream 269 32494610 ~ 32495559 (+) True G1728170
TU1979630 lncRNA downstream 150453 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 161048 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 161444 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 167708 32662049 ~ 32662256 (+) True G1728265
NM_001124321.1 mRNA upstream 15851 32456121 ~ 32458130 (+) True LOC100135983
XM_021577522.2 mRNA upstream 53416 32409872 ~ 32420565 (+) False LOC110500261
XM_021577521.2 mRNA upstream 53416 32409875 ~ 32420565 (+) True LOC110500261
XM_021577519.2 mRNA upstream 78074 32365524 ~ 32395907 (+) True LOC110500259
XM_021577518.2 mRNA upstream 82453 32365521 ~ 32391528 (+) False LOC110500259
XM_021577541.2 mRNA downstream 28431 32522772 ~ 32531043 (+) True LOC110500266
XM_036957678.1 mRNA downstream 36855 32531196 ~ 32553744 (+) False LOC110500265
XM_021577531.2 mRNA downstream 36865 32531206 ~ 32553744 (+) False LOC110500265
XM_036957676.1 mRNA downstream 36865 32531206 ~ 32553744 (+) False LOC110500265
XM_021577532.2 mRNA downstream 36867 32531208 ~ 32553744 (+) False LOC110500265
TU1979380 other upstream 311589 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 337285 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 338982 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 909387 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 965609 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 827112 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1215751 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2944948 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3546990 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3738781 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile