RNA id: XM_021577533.2


Basic Information

Item Value
RNA id XM_021577533.2
length 2788
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110500265
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32531196 ~ 32553744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGAACACATTTTAGCTGTATTGTATTACAAATCAGTTTAAAGTTTCCCGCTTAAAATATCTGCCACTGCTGAATGCACCCTTATGGAAACCCGTTCTCGCCACTCGTGTTTTGTGTGGAAATATCCGTACTACTTAAAATGTCGAGATATAAAGCCACGAGGAAAACAGACAAGCCTCGGCCAGAGGACCTGGATGTGACTGAGCTGACCAGTGAGGGCCTGAAGGATGAGTTGCTCAAGTATGGAATCAACGTAGGACCCATCGTGGCCTCAACCCGTAAGCTGTATGAGAGAAGGCTCCAGAAGCTATTGGACCAGGGTCCTCCTGAGACCGTGGCTTTACCGGTGGTCATCACTCAGGTCGACAGCAACCACAACGGCAACTCTGACTCAGACCGCTACAGCGACAAAGAAGAAGAGGTGACTACAGAACCAGAGCCTGTCCCAGTCCCCGTGGTGGAGAGACCTGTCAGAAGCAGAGGGAAGAccccagtcaccaccaggacccgcAGCAGCCAGCACAACCGGATCTATGCTccggaggaggatgatgatgatgatcttgAGGAAGAGCATCCTGTGTTGAACATAAAGAGACCATTGAGGAGATCATCTCATAGAGTCGACCAGATGGTCCCTGCAAGCGATGATATTGATGTCTCTGAGCTATCAGCTGGTGAGGGAGTTCTTCACCCTCCAAGAGAGGCAAAGACCAAGGCACCTCTGCTTCTGGAAGTCCTTAAGGAACCTAAGCCTATATTGGCAGAGAAGCCAAGCTCTACTCCCTTACTGCATGGCCTAGCCCATGCCCAGTCCACTAGGACTATCCATCAGGTTGTCCTAACAGCCAGGGCTGAGTCTCCATCACCCAGACTGACTCAGtctgtccctgacCAAGCCTTCCCCCTGAATGTGAATGCTGCTGCGCTCTGGTTCCCCAAAGCCAAACCCAGCGGGCCCCCAGTCAAGAACCCCAGCCACGGTGTCCCTGAGGGCCACAAACTCCCGGTGTCTAGAGAGCCCTCACTCCCTGGCAGACCTctgtgttgtgaggaggatgGTGGTCTTCCTCTCACTCTGACTACGAAAGCTCCCAGTCGTGAGCTAAACACCCTACTCAATACAGCTCTTTTAGAGGATCCTGCACCAAGTATCCATGCTCCAGTAGGACAGAGCATAAGACCCCTGAAACAATTGCCTCTGGGGGTACCACAGAAAGTCCGCCCACTCCAAGTAGCCAACCCTTCCCCACTACCTCGTTTGTCTGGAAATGACCCCAATGCCTCCTTCACCGTCAGGCCTGTAAGCTACGTCTCACACACCCCCTCATCTCCATCGCTGAAAGAACAACTGGAATCCCTATCATCGCTCTCTGCCAAGTTTGACATGCTGTCCAATCGCTTTACTCGGCAGGATCAGCGTAAGTCTAAAAATGACCTCGAACCTAAGTGGAaacagcagaaaaacacccccttCCTGTCCTCTGTGACCCCAGTGAGGGGGCAGGACAGTGTCTCCTCGAGTATCTCTAAGGAGCCATGGGTGGAGAAGATAGCAGCTGGTGAGCAGACACCCAACAGGGTGGATGAGAAGGATATCCTGAAGGAGATGTTCCCCTACGAGACCAACACTCCAACAGGAATCAACGCCACCTGTCGACGTCCCATCCGAGGGGCAGCCGGCAGGCCCCTAAAGTCTGGTGACCTGTGGACAGATGAGACCCTCCTGCGCTCTTCTCACTCTTCCTACACAGAGAGCCGCACCGCTACCGTCCACAGAGTCCCCACCCTGCCCCCCTCTACCAGGCTGTTAACGTCAGTGGCACCCCCTGCTGGAAAGGCCATAGCGCCACCCCATGGCCTGCCTGTCTGGCTGAAGCTGCTGCTCCTCGGCATTGTAGCTGGCTTCATATTCTTCATCTACCAGACCATGGAGACCAACGCTATGGCCCCCTTCGGAGGGTCCTCAGATTCCACGCAGACCAGTGGTCGTGAGGTCCGCAAGTGAAGCCTGGAAGACAGTGCTCTGGCAGTATAATGTTACTGCCACCACTTTCATCGTTCCTAGCTTCCTTGGcattcttgtttttgtttttttcccctgtttccatcactcataattggttaaatgGTCTGGTACGGGAGCCTAATTTGTATCGACGCCTGCTGAAGACGACAATGTCCAAAATGATATATTGAACATTGAAGATGACCACCACCTTCTCATTCTAAAATGACAATACTGTCTTCTGTTTGTTTCAGTCCGTCCTTTCCCCATCTGTGAGGCTGAGAgaaagccagtcgcaccaatgatCTCCAGATAACGTACATACACCGAAACAGTGGCTTCCAAATGATGTGAACTTGCCTTATATGGTCTATGTTTTAGTTTTACATCTCTGCATGGTGTAATCGTATGATTGCATTTGCCGGAGTCTGTGAAAGAGAAttgcctgtgtctgtgtttaaCACGGTTTGCTTTTGTAATGCTGTCACCATAATCCAATGCAGTTAGATGTAATCTAATGCAGTtattagcaaaaaaaaaacagtcaggCAAAGACTGAAGGAATTTCAACCAATTGTATTCAGTTATTTCTTGATCGAACCATGTATACAgcgggtatgtgtgtgtgagactgggaTTCTTAAAACTCATGCACACATATAGCTCggtctcttttttttatttttttattgtctgTGGAGCCTAATTAGTCATGTATGATGTATtcattgtaataaataatgtaatATCCTCTCAATAAAACTATAATATGTAAGGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979543 lncRNA upstream 36551 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 63610 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 69392 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 72301 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 175549 32354036 ~ 32356561 (+) True G1728132
TU1979630 lncRNA downstream 91050 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 101645 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 102041 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 108305 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 113867 32667611 ~ 32667979 (+) True G1728269
XM_021577541.2 mRNA upstream 1067 32522772 ~ 32531043 (+) True LOC110500266
XM_036957672.1 mRNA upstream 37769 32473981 ~ 32494341 (+) False LOC110500263
XM_021577542.2 mRNA downstream 6806 32560550 ~ 32568416 (+) False LOC110500267
XM_021577543.2 mRNA downstream 6806 32560550 ~ 32568416 (+) False LOC110500267
XM_036957679.1 mRNA downstream 6806 32560550 ~ 32568416 (+) True LOC110500267
XR_005038758.1 mRNA downstream 10968 32564712 ~ 32564944 (+) True LOC118943022
XM_036957680.1 mRNA downstream 17000 32570744 ~ 32585663 (+) False LOC110500268
TU1979380 other upstream 369718 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 395414 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 397111 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 967516 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1023738 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 767709 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1156348 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2885545 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3487587 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3679378 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile