RNA id: XM_021577543.2


Basic Information

Item Value
RNA id XM_021577543.2
length 1502
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110500267
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32560550 ~ 32568416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGGACTATCCCACTTTTTCCCGTGACGTAGGACGAAGGACAAAATGATTTATCGCGAGGTCGTTCGGCCCCTGTGACCGCCGGTTGAAGTACAGTGGAGGCTCCATTTTAAGACACGGAAAGAACCGGTTTTGGACACCATGTATCCGAACACACTAACGCAGTTGTCCCGGGCTAATCCCTTCAACGCCCCGCTATTCTCCCTCCAAGAAATCGAGGAGCCCAAACAGAGCCTCCCCGCAAATGGACAGAGCCGCAACCTCGCTGCCGCAGCAATTGCTGAGGGAGACAGCTGTGAGTTCGGCTCACGGAAGTATTTACTCCTCTGTGGGTTTGGTGGCATCATCAGCTGTGGCACCACACACGCAGCCCTAGTGCCCCTCGATCTGGTCAAATGCAGAATGCAGGTGGACCCTGACAAGTACAAGAGCATTGGCAAAGGCTTCTCCCTCACATTGAAGGAGGATGGAGCCCGAGGGCTGGCAAAGGGCTGGGCCCCTACCTTCATCGGCTACTCCATGCAGGGTCTCTGCAAGTTTGGCTTCTATGAGATGTTCAAGATCTTCTACAGTGACATGCTTGGAGAGGAGAACACCTACCTGTGGAGGACATCCCTGTACCTGGCTGCGTCTGCCAGTGCAGAGTTCTTTGCTGACATTGCCCTGGCCCCCATGGAGGCTTGCAAAGTGCGTATCCAGACCTGCCCCGGCTACGCCAACAACCTCAGACAGTGTGCTCCCAAGATGTTTGCAGAGGAGGGAGTATGGGCGTTCTACAAGGGTGTGGTTCCCCTGTGGATGCGGCAGATCCCCTACACCATGATGAAGTTTGCCTGCTTTGAGAGGACCGTGGAGCTGCTCTACAAACACGTGGTGCCCAAACCACGTGCTGACTGCACCAAGTCCGAACAGCTGATCGTCACCTTCACGGCCGGCTACATCGCTGGTGTGTTCTGTGCCATCGTGTCCCACCCAGCGGACTCAGTGGTGTCTGTACTGAACAAGGAGAGTGGCAGCACCGCCGTCCAAGTGCTCAAGAAGCTGGGACCTAAAGGTGTTTGGAAGGGCCTGGTTGCCCGTATCATCATGATCGGTACTCTGACCGCTCTGCAGTGGTTCATCTACGACTCCGTGAAGGTCTACTTCCGCCTGCCCCGTCCCCCTCCCCCCGAGATGCCAGAGTCCCTCAAGAAGAAGCTGGGGCTCActgagtaaaaaaaacaacatctcCAGGACCCCCTCTCGACTCACCTCACCCCCCTGGCTGCAGCACACAGCTCTGTTTTCTATATTTATGTTCCTAAAGCAGCTCCTCTTCTCCAGGGCTGTTCCTCCCATGTATatttaagagaaagagagactggaaGGGAGGGATCCATGTTTGTCCCCCCTCTGCACTGAGGTACAGGAGAATATACGTACTGTAGAAACATAGTCTGGTTTTATCATGTCATTAGTAATGTGGAAATgataaaaaattaaaatgtttCCCTCTAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979543 lncRNA upstream 64991 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 92050 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 97832 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 100741 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 203989 32354036 ~ 32356561 (+) True G1728132
TU1979630 lncRNA downstream 76378 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 86973 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 87369 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 93633 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 99195 32667611 ~ 32667979 (+) True G1728269
XM_036957677.1 mRNA upstream 6806 32531215 ~ 32553744 (+) False LOC110500265
XM_036957680.1 mRNA downstream 2328 32570744 ~ 32585663 (+) False LOC110500268
XM_021577544.2 mRNA downstream 6060 32574476 ~ 32585663 (+) True LOC110500268
LOC110500270 mRNA downstream 25972 32594388 ~ 32602892 (+) True LOC110500270
XM_036957681.1 mRNA downstream 44751 32613167 ~ 32636236 (+) False LOC110500271
XM_036957682.1 mRNA downstream 44751 32613167 ~ 32636236 (+) False LOC110500271
TU1979380 other upstream 398158 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 423854 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 425551 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 995956 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1052178 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 753037 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1141676 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2870873 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3472915 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3664706 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile