RNA id: XM_021577544.2


Basic Information

Item Value
RNA id XM_021577544.2
length 1783
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110500268
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32570744 ~ 32585663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATTGATATTCTTTCCGTGTCAAACTCAGCCAGTGGTGAAGCCCTACTTTGCATCCTCCTCTTTGGCTAAAAACCCGTTAAACCCCGAACTCCATAAGTGAAGTCATCACGTCCTCTCACTACCTGACTGTCGACGCTGCTTCAATTGCCTGCCTCTTAGGACCAAAAAGGGATATAACCGATCTTTAAAATATATGCAAAAGcgTTGTGAATCATGTCGTCTGTGATGCAGAAGTTGATCACCCCCATGGCCAGCGGCCCTGCTGAGCCCCCCAGGAACAAAGTGACCGTGGTTGGGGTGGGCATGGTGGGCATGGCCTGTGCCGTCAGCATCCTCCTCAGGGACTTGGCTGATGAGCTGGCTCTGGTTGACGTGATGGAGGATAAGCTGAAGGGAGAGATGATGGACCTGCAGCACGGCAGCCTCTTCCTAAAGACATCTAAGATAGTCGCCGACAAAGACTATGCCGTGACTGCAAACTCCCGCATCGTGGTTGTGACCGCTGGCGTGCGTcagcaggagggagagagcaggctcAACCTGGTCCAGAGGAACGTCAACATCTTCAAACACATCATCCCCCAGATCGTCAAACACTCCCCCAACTGCACCCTTATCGTGGTGTCCaacccagTGGATGTGCTGACCTATGTGACATGGAAGTTGAGTGGCCTGCCCAAACACCGTGTCATCGGCAGCGGCACCAACCTGGACTCCGCCCGCTTCCGTTTTCTGATGGCTGAGCGCCTGGGCATCCATGCCACCAGCTTCAACGGATGGGTGCTGGGAGAACACGGCGATACCAGCGTCCCTGTGTGGAGCGGTGTCAGCGTAGCTGGAGTCAACCTGCAGAAGCTGAACCCAGAGTTTGGCCTTGACGGAGACAAGGAGGACTGGAAGGCCACCCATAAGGAAGTGGTTGACAGTGCCTATGAGGTGATCAAGCTGAAGGGGTATACCAACTGGGCCATCGGCCTGAGTGTGGCTGATCTCACTGAGAGCATCATCAAGAACATGAGCAGGATCCACCCTGTCTCCACCATGGTCAAGGACATGTATGGTATTGGCGAGGAGGTGTTCCTGTCCCTGCCATGCGTGCTGAACAGCAACGGAGTGGGCAGCGTGATCAACATGACCCTGACCGACGCTGAGGTGGGCCAGCTGAAGAAAAGTGCAGACACACTCTGGGGCATCCAGAAGGACCTCAAGGACGTCTAGAGACGCACAGCTACCCTTTCTCCCTCCGTTCCCGATGCAGGCAATCCCAGACCTAGTTCCACCCGTCCTCCGATCTACTGTGTCCATCTCCCTTTCATCTTAATCTACTGGTATACATTCTGCCTTTCACCTCCCCCCCTTTCCTTTTGTAGGATGAGGTTACTGTGTTGTTTCCGTGCTAGGTGCTGTGTGAACCAGTATGACTATGTACCCTCATTGGATTCATGTGTTGCAGCTGTTGTACTACGATCAAAAAGTGTTGGCTTTATCCTCCATTTGCACTTTCTTGAAGCACTGTTCTGTTCACTTCCTGTCGGGAGCGCAGGAACAAAGACCCTATAACTGGGTCTCCTCCTGTCGGGGAGCAGTGGTGTTGGTTATTGTGCGAGATGTTCAGTCTGACATTGATTGCCAGAAAGaaacaaagggaggggcagaggtGGAATCAATCGAAACGGCCTACTTTagtagtttttattttattttttacatactgTAACACCCATGTTTGTGTAATGAATGACAACAACCAATGAGTAACTCAATAAATACTTTAACCTTA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979543 lncRNA upstream 78917 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 105976 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 111758 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 114667 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 217915 32354036 ~ 32356561 (+) True G1728132
TU1979630 lncRNA downstream 59131 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 69726 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 70122 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 76386 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 81948 32667611 ~ 32667979 (+) True G1728269
XM_021577542.2 mRNA upstream 6060 32560550 ~ 32568416 (+) False LOC110500267
XM_021577543.2 mRNA upstream 6060 32560550 ~ 32568416 (+) False LOC110500267
XM_036957679.1 mRNA upstream 6060 32560550 ~ 32568416 (+) True LOC110500267
XR_005038758.1 mRNA upstream 9532 32564712 ~ 32564944 (+) True LOC118943022
XM_021577540.2 mRNA upstream 20732 32531224 ~ 32553744 (+) False LOC110500265
LOC110500270 mRNA downstream 8725 32594388 ~ 32602892 (+) True LOC110500270
XM_036957681.1 mRNA downstream 27504 32613167 ~ 32636236 (+) False LOC110500271
XM_036957682.1 mRNA downstream 27504 32613167 ~ 32636236 (+) False LOC110500271
XM_036957684.1 mRNA downstream 27504 32613167 ~ 32636236 (+) False LOC110500271
XM_021577549.2 mRNA downstream 27505 32613168 ~ 32635576 (+) False LOC110500271
TU1979380 other upstream 412084 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 437780 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 439477 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1009882 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1066104 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 735790 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1124429 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2853626 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3455668 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3647459 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile