RNA id: XM_021577549.2


Basic Information

Item Value
RNA id XM_021577549.2
length 2780
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110500271
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32613167 ~ 32636236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCTCTGCTGAATATAACTAGGTAGTTGTTGGAAGATATCTGCCCTGCCTACATACACTTGTCCATTTTCCGGATGGAAAATGTTTTCTAGGTTCTATTGTattgtaaaataaaggttaaataaaataaaacattgattCAGCATGGATTGCAGTTGGTTTGTTGAATGTACCCCATACGTGGAGATAGTGAAAGCAACCGCAATTTGATTGGTCTCCACAACATTATTTTTTTCACCGGCGGGAGCTGTCAAGCAACCATCACGAAAAAAGCAAGCAAATGAACAGTGCAAACTCAAGAAGTGGGGAGAGTGAATGGTCAACGAGTGATAAGTCTGCAAGGTGGTTGATTGGATTGTACATTTACCTTGGAAATGGACAGTGCCAATGATGTGCAGACAGAGCTGGACTCTGTGGAGGCAGAGCTGGAGGTGGTGGAGCTGCAGATAGCTGAGCTGCTGGAGAAGCAGGCTAGCCTGACCTCCAGGAGGAAACGGCTGCTCCGCAAGCTGGAGGAGGCATGTGACTCCGCCCAGCCCTCTGTATCCTCCTCAGACTCTGGATCTGGACCTGCAATGACCAAGCAGGAGCTGCTGCGCTATGAGAATGATGATTTCTCGTGGTCTACAGAGCTGCAGCAGAATCTGAAGGATGCGTTCCAGCTCTCTAAGTTTCGTCCTCTCCAGCTGAAGGCCATCAACCTTAGTATGTCTGGTAAAGACCTCTTCCTAGTGATGCCCACTGGACGAGGGAAAAGCCTCTGCTATCAGCTACCTGCAGTCTGCTCTGAGGGTTTCACTCTGGTCGTAACTCCTCTAGTTTCTCTGATGGAGGATCAGCTCATGTACTTAAAGTCCATTGACGTTGAAGCCGTCTCTCTCAACGCATCCAGCAGTAAGGAACATGCTAAAATGGTCCTAGCGGGGATGACGGACACCAAATCGCTTTTCAAGCTGCTGTATGTGACTCCAGAGAAGATAGCGAAGAGCAAGCTGCTGATGTCGAGGCTGGAGAAGGCCTACAACGCAGGAAGGCTTAGCCGTATTGCTGTGGACGAGGTGCACTGCTGCAGCCAGTGGGGACACGACTTCAGACCTGACTACAAGCTCCTGGGGATCCTGAAGAGGCAATTCCCAAAGGTTCCATTGCTAGGGCTGACAGCCACAGCAACCAGCAGTGTTCTAAAGGACTGTCAGAAGATCCTGTGTGTCCCTGAGCCAGTCACACTCACTGCCTCCTTCAACCGCACCAACCTCTACTACGAGGTACTTCTTAAAGACTCGAACAGTGTTGATTCAATCAGTAACATTTCAGCACTGATCAAGGAGAGATATAAGGACCAGTCAGGGATAGTGTACGTGTTTTCCCAGAAGGATGCAGAAACGGTGTCAGCAGACCTACAGAAGAAAGGCATCAATGCATATCCATACCACGCTAACATGAATCCAGAGGACAAGTCACGGGTTCACCGCAAATGGGCCAACAACAAGATCCAGGTGGTGGTAGCTACTGTGGCGTTCGGGATGGGGATCGACAAGCCTGACGTCAGATTTGTCATCCATCACACCATCAGCAAGTCCATAGAGAACTACTATCAGGAGAGCGGACGAGCAGGCAGAGACGATAAGCCGGCTGACTGCATTGTGTACTTTGGCTTCAACGACATCTTCAGGATCAGCACCATGGTTGTCATGGAGAATGTAGGACAACAGAAGCTGCTGACCATGGTCGACTACTGTCAGAACGTAGACAGGTGTCGGCGCTCAGTGATCGCTGTTCACTTTGATGAGGTTTGGGACAATGAAGGATGCAACAAGATGTGTGATGTCTGTCGCCGTGGCAATGACTATATCACGGTGGACATCACGCAGCATGCTAAAGATGTGGTCCAGATTGTGGAGCTGGCGGGCTCTCTGGACGAGAAGCTGACCCCCCTGAAGGTGACTGAGTCGTGGATGGGGAAGGGTCCGGCCAAACGCAGGAAGATGATCCAGACCACCACCTTGTCTCGCCTGGAGGTGGAGGCCATCATCACAAGCCTATTGCTGCAGGGATATCTCAGTGAAGACTTCAGTTTCACTCCATACACTACCTACTTCTACCTGAAGCTGGGTCGTAAGGCCCCATTGCTGAAGAACCAGAGTCACTCCATCAccatgaagaggaggaggaggacaggcctGGAAGCAAACACGGTAAAAGTGTCCCAGGTAAAGACCAAAGAAGGAAAGAGATCTGGTGACAATGCTACAAACTCCCCTGTCAGCAAGAAAGTCAAGAAAGACCTCTAGTGCCCTTCTGAAGATACCAAAGAAAAAGAGGACCAATTAGCTGGTGGAGCTAAAGAGGTAGTGGTGACCTCCCAGTCCCCTCCTCCCGTTGCCCCCAACGACAGCAGCACTCCCCCTCCCAGACACAACAAACTGATCAAGATGCGTAAAGAGCAGCAGAATCTGGCCAGGAAACAAGACGAGAACCATGACCAGACAGAAAGCCAGACACGGGAGGACCAGAATGACCCTGCTGCTGCCCAGCCCACTGCCATTGACGTAGATGTAGAGATCAATATTATAGAGAAAGTTAATGACAGCAAATCCCCATTACCGCATTTAAAACTCAATTCTACAACCCCTCAAAAGAAGTGGAGGAAACCCTGTATTGCTGCTCTTGCTGCAGTCCTAGCTCCCTCAGAAGCTGTGGTTACAGACTGTGAACACCAGAGGCCAGCATTGGTCAACTCTCCCTCCCAGGTCTCCATCTCTGAGGCTGCAGTGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979543 lncRNA upstream 117609 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 144668 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 150450 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 153359 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 256607 32354036 ~ 32356561 (+) True G1728132
TU1979630 lncRNA downstream 9218 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 19813 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 20209 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 26473 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 32035 32667611 ~ 32667979 (+) True G1728269
LOC110500270 mRNA upstream 10276 32594388 ~ 32602892 (+) True LOC110500270
XM_036957680.1 mRNA upstream 27505 32570744 ~ 32585663 (+) False LOC110500268
XM_021577544.2 mRNA upstream 27505 32574476 ~ 32585663 (+) True LOC110500268
XM_036957679.1 mRNA upstream 44752 32560550 ~ 32568416 (+) True LOC110500267
XM_021577567.2 mRNA downstream 58641 32694217 ~ 32756092 (+) True LOC110500277
XM_021577566.2 mRNA downstream 132419 32767995 ~ 32792331 (+) True LOC110500276
XM_021577571.2 mRNA downstream 157634 32793210 ~ 32834958 (+) True LOC110500278
XM_036957687.1 mRNA downstream 206213 32841789 ~ 32957803 (+) False LOC110500279
XM_036957688.1 mRNA downstream 206213 32841789 ~ 32957803 (+) False LOC110500279
TU1979380 other upstream 450776 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 476472 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 478169 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1048574 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1104796 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 685877 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1074516 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2803713 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3405755 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3597546 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile