RNA id: TCONS_00050614


Basic Information

Item Value
RNA id TCONS_00050614
length 1948
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_025747
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52684556 ~ 52700610 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCTGTGATTGGATGTTGGTCAGATCGCACGAGGAACTCTTGAAGGTAGCCTGCTAAGAAAACATTCCGCGAGAGTGATGTCTGGAAGGAGAGTGTTGGTTTTTTCTTCAGTGGGGGAGCTCGGGTCTAGTCTGGCTCAGCTGCTGTCCTCTCGAGCAGAAAAAGCTCTGAGCTCCGGTGGAAGCTGCTTTTCTCTGGGTCTTTCAGGAGGGAGTCTGGTTTCTATACTGAGTAAAGAACTGCCTGCTGTACCAAACCTGGACTGCAGCAAGTGGCTTATTGGCTTCTGTGATGAGAGACTTGTGCCATTCAGTGATCCAGAGAGCACTTATGGATTATACAAGAATCAATTATTTGGGAAAATCAACATTCCAGAAGAAAGGATTTTAGCCATAGATCCTTCTTTACCTGTGAAAGAATGTGCCGAGGACTATGCCAGCAAACTCAGCAAGGCCTTTAGCACAGAGAAGATTCCAGTGTTTGATGTCTTGTTGCTGGGAATGGGACCAGATGGACACACTTGCTCTCTCTTTCCAGATCATCCATTATTACAGGAGCGTCAGAAGACAGTGGCCCCTATCTCTGATTCCCCCAAACCGCCCCCTCAGCGAGTCACTATGACGTTACCCATGGTTAACGCCGCTCGATGTGTGGTGTTTGTGTCGACCGGCGGCAGCAAAGCCCCTGTACTGAAGCATGTGTTGGAGGGTGGTGAAGGGCCTGCTCTTCCAGCAGCTCTGGTTTCTCCTGACCAAGGAGAGCTTTTCTGGCTCCTGGATGAACCGGCTGCTGCCTCACTCACGTCTCCAGTTGAGAGGCCTGGTCCTGGAGCTAAACTTTAAACTCAGCACACTGAACTTGTAGAAACACAGGCTAGTATTTAGAGCTGTGGCGAAAATTATTTGAGAAAATGATTCTGCAAATTTCAAAACGCACCACTACTTTCTCTTAAAACGGTTCTGAGCTATGTAACAGTAGATGTGCTCTAtgccagtttttaacagcagatggggctctaggttagtttttaacaatacactcaaatgtacacaaaaaaaaactattgtgagatttcattgagacaacctttttaaatgttcaaattatatacatttgttaaaaatgttaagttaacttaatcaatttgtgttgggacaacatgaatgaattgtgtggaaccctgcatttttttacagtgtacagcttGGTTTGTATGTCATGACAATAATGTAAGCACAGCTCACTATGAACATTCTTGTACTTTGCTTAAATCTTTTCTAACTTCCCTTATAATTATTATAGGCTGGACTGGTATTTGTAAGGAATTGGATACAAGCAAAGTATGGCTGTTTGTAAAAGCAttcagcgccatctgctgttaaaaacagccTACAATCTATTCAACAAAGAATATCAatgctttttaaacatttatttctctAATAATATTCACCGCCGCTCTACTGGGATTTCTGTGGAGTCCCTAAACAGCACTGTTTAAGAAGTTGTTATCTTAGCACTTATGAAAATTAATCATCACAAAGGTAATTACTGCAGTTACTTCTACTATTGTATTACTGTTATACACtgcaaaatgattcattggaaggaaaaaatataaattagttgcaaacaattgatattgGCTGATTTTGAATAAACAAATCGAACtgagtaatgtttaacttaatttgtttaaattcagcccatttaaattgtttgcaaccacttaccttaaaatatgtaaatccaattaatcatttttttcagtgtcggatctttaatgattttaataatcTGTCATTTGATATTGTTCACTATTTTCACATTAGTTATGTTACAGCaacaataaacataaatgttGTTATTTTGAAGAAACACATTGTTGCCATTGTACTTTTGTCTATAGAtgcaatgttttattaaaaaactgcTGAAAATGTGAA

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0009051 pentose-phosphate shunt, oxidative branch biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0017057 6-phosphogluconolactonase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway

ZFIN:

id description
ZDB-GENE-040822-9 Predicted to enable 6-phosphogluconolactonase activity. Predicted to be involved in pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be active in cytoplasm. Orthologous to human PGLS (6-phosphogluconolactonase).

Ensembl:

ensembl_id ENSDART00000139037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052379 lncRNA upstream 292351 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 295517 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 305084 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052797 lncRNA upstream 420410 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052380 lncRNA downstream 105662 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052799 lncRNA downstream 826355 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 905556 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 931508 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052383 lncRNA downstream 1410779 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050611 mRNA upstream 80873 52545014 ~ 52603683 (+) False XLOC_025745
TCONS_00050612 mRNA upstream 81588 52545400 ~ 52602968 (+) True XLOC_025745
TCONS_00050610 mRNA upstream 144893 52528606 ~ 52539663 (+) True XLOC_025744
TCONS_00050609 mRNA upstream 187791 52487695 ~ 52496765 (+) True XLOC_025743
TCONS_00050608 mRNA upstream 194505 52475058 ~ 52490051 (+) False XLOC_025743
TCONS_00050615 mRNA downstream 2090 52702700 ~ 52732034 (+) True XLOC_025748
TCONS_00050616 mRNA downstream 36955 52737565 ~ 52801302 (+) False XLOC_025749
TCONS_00050617 mRNA downstream 52806 52753416 ~ 52801106 (+) True XLOC_025749
TCONS_00050618 mRNA downstream 105737 52806347 ~ 52883424 (+) False XLOC_025750
TCONS_00050619 mRNA downstream 105831 52806441 ~ 52883423 (+) True XLOC_025750
TCONS_00050613 other upstream 64381 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 2609366 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3552079 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 5223953 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 7049370 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050620 other downstream 128302 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1366913 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2598433 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 2782903 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 4935764 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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