RNA id: XM_021577567.2


Basic Information

Item Value
RNA id XM_021577567.2
length 4957
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110500277
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32694217 ~ 32756092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGTTTTATTTAAAAGATTATTCAAAGTAATACGTCATTTTGAAAGAAGCATGCTTTGAATTCGTGTCCCTCAGTCATTAGGCACGTTTTTTTGTCACACTCCCTTCTAACAAGTCCTTGTCCAGAAAGGGAAACAAAAGCCACATATGTGTTAGACTGGTAGCTTTCAGGAATGGGGTCCTAATATTTTGTAGCTTAAACCGTTCAAATGCTAGAGCCAAATGCATatgaagaaaacaaaaaaaatctatatgcCACAAAGGTGCAAGAAACCACAAAAAAACGCTAGTGCTTGTCCTTTGGGCCGCCAGTTGAATAGCCCTGCACTATAGGTTATGTGTGATGCAAGGTAATAGGTAAATCAGTCAGTAGGCAGTCACCTGCAGTAATTTTGATTCTCTGGAACACGGCCAGTGTCTACATGGCAGTTTGCAGGAAAGCAATACCTCTAcgtcagagcgagagagcgcgagagagagacagagaattaTAGAGTAACCCTCATCAGTACCACTGCAATGACACTTCTGTAGCCTGTGACCACGGCTACAGACCAACTTCTGTCAACTCGAATTATTAATAATTAACGGTTTTTGGACCATTTGCTCGACTGTGAGGACAACAAACATCTCTTAACAATTAACCAACCAATTACAGTCCTGTGAACATTTCGTGGGTGCGTTTGTTTCCCTTATGTCCCGAAAATCGAGCGACAATGACTATAATCTTCGTAGTATGAGCAACCTGATGGGTGAGAGGAGGAAGAAAGTGAACGATGACGGAGAGCGGAGCCTCATCAAAGCTTCGTCCAACGCGAGCATCAACAGCCAGGCTGCCGATGTCCCTGCCAATGCCACTGCCGCCACCTCTACCCGGGACCTGGAGAGAGAGGCGCGTAAACAGTTCCAGCAAGATGTCACACCTGCGTTTGTTTATGTTCTAGCTGCGTTCTCCGCGCTGGGTGGCTTTCTGTTCGGCTATGACACCGGGGTAATCTCGGGAGCGATGCTCCTGCTCAAGAGGGAGATGAATCTCAGCGCCCTATGGCAGGAGGTTCTGATCTCTAGTACTGTGGCTACCGCCGCGCTGTCGGCGTTGGCTGGCGGGTTGTTGAACGGAGTTTTCGGGCGCAGGGTCTGCATCCTCCTGGCTAGTTTTATCTTCACAGCTGGGGGAATAGTGCTTAGCGCAGCTCCTGATAAGGAGGTTCTACTGGTCGGACGTCTCATTGTTGGGCTTGGACTTGGTATTGCGTCCATGACGGTGCCAGTGTACATAGCCGAGACGTCTCCCCCCCACCTGAGAGGCCAGCTGGTGACAGTAAACACACTGTTTATCACAGGAGGTCAGTTCACTGCCAGCATCATAGACGGGGCCTTCAGCTACCTACGCCATGATGGAtggaggTATATGTTGGGTCTGTCGATGGTCCCTGCGGTGCTTCAGTTCGTGGGGTTTCTGTTCCTGCCAGAGAGCCCCCGCTGGCTGATCCAGAAAGGCCTTACCCAGAAGGCCCGGCGCGTGCTCAGCCAGATTAGAGGCAATCAGAACATAGACGAGGAGTACGACAGCATCAAGAACAGCatcgaggaggaggagaaagactgcggaggagatggCCCGGTGATCTGGAGGATGCTGACCTACCCCCCCACTCGGAGAGCACTCCTGGTGGGATGTGGACTGCAGATGTTCCAACAGCTCTCTGGGATCAACACTGTCATGTACTACGGCGCCACCATCCTGCAGATGTCGGGAGTGCGGGATGACAAGGTGGCCATCTGGTTGGCTGGGGTCACAGCCTTCACCAACTTTCTGTTCACCCTACTGGGGGTGTGGCTAGTGGAGAGAGTTGGCCGCAGGAAACTCACCCTGGGGAGCATCATTGGTACATGTCTGAGTCTGTCTCTGCTGGCCATTGGGTTTCTGCTGTCTGCCCAACACACCCCTCCTGTCACCCTCCACCCCACTGACCCCTCAATGGTCAACTCCACCTGCAACAGACACCTGCTGTGTGAGCCGTGTATGCTGGACCCGGGGTGTGGCTTCTGTTACCGTGAGAACAGCACAGCTCTGTTCGCCTCCTCGTGTGTACCTGTCAATACAGCCTCCACTGAGAAGGCAGCCTGGGGCAGGTGTTCCAACTCGACCCAGCTGAGAGTCCATACGTACTGGGCCTATAACTACTGTCCCACCTCCTACTCCTGGGTGGTCCTACTGGGTCTTGTTCTCTATCTGGCCTTCTTCGCCCCAGGTTTGGGTCCAATGCCGTGGACAATCAACTCTGAGATTTACCCCCTGTGGGCCCGGAGCACAGGGAACGCCTGTTCAGCTGGAGTCAACTGGACATTTAACTTCCTGGTCTCCCTCACCTTCCTCCATGTGGCTCAGAACCTCACCTACTACGGAGCGTTTTTCCTTTACTCCAGCCTGGCTCTGCTTGGGTTCTTCTTCATCTACGGCTGTCTGCCTGAAACAAAGAGCCGGAGGCTGGAGGAGATTGAGTCCCTGTTCGACAACCAGCTGTGCTCCTGCGGGGCCACAGACTCTGATGAGGACCGGCAGGTGGAGTACATCAGGGTGAAGGGGAGCAACTACCACCTCTCTGATAACGATGCCTCCGACGTGGATTAGccctagcctgagtgccagtcagTTTGTGCTTTCATGCCAACTCAATGTCATGCCAAATAATGGCTTGATGATGACAGCcatggagttggcaagagcacacaGATCTGGTCCCAGTCTAGTTTGTAACTTTGGCCTTGGATTTTGTCCCTGTTCTCTCAACTCAGAAAGTATGTATCAAGTGTTTTGGAGTAGGAGTGTTGATTTAGGATTAGTTTGGCCTTTTATCATAATTAATAATATTACATGGACAGGAAGCTTGATACATACAGCCCCTGATCTACAACCTCCCCGAGTCCTGTTCTCTGGTTTGCCTCAGTCACGTAGGTTACATTGCTCCATCTTTTTCACACACAGGGTAGCTATTTATAACACAAGTTACTTACACATTTCATTTTGCCAATGTAATGTTGTAGTTACTTCTATAGTTTGATAATAATCTTATTTTTGATTTATAAACCATCATGTAAATAGTATTAAGCATACATTACATTCAAATTTATCCTCAGCATTTAGACATCCATTTTACTGTTCATATGTCGCATTATTATGAATTTCCATATATGAGGCAGACCAACAATTAACAAAACTATTGCCTTTTCCCTCACATAAAAAACCCTATGATTAGAGATAAAACCTCTTCACAACAAAACCTTTATTGTAGGAGTCCAAACGTCCACTAAAATGGCCACGATATTACAAGTTTTAAAATCAGAGAGAGGGATTGTAATATAGTGTTGATACCAGTATGCCTTTCTATATGAAACACAACTCAGAACAATATTGTCTCAGCTTGTCTGTAGCATCACAAATGGGGTGTCAGACACTAGTAGTACACCTGGGCtttgcatcccaaacggcaccctattcctagtgcactacttttaaccagagccctatgggccttggtcaaaagtagtgcagtataaagggaatagcatgccatttgggacttaacCTGTTCTCTGTCTATAATGATGTTCAGTCTTGCTTTGCTATTTGTATTATCATGTTGGTTGATAAGCTACAGTAGCACATGACCCGTCTCTGTTTTCTCATTAGTAAACCTATGGATTATTATGTTATTTATTCTAATGTATTTTACCCATGATGTCGGTGCCTGTACTGAAGTGAAATGTATGAAGGAGTTGACTATATGGCCAGCCAGCGTGATGATAGCCTTTCAGAAGTTGCAAATGTTTTTATTAATCGATGTAGACTAGACTATTCATTGGGTTGTACCTCAGTCTCTGAGGGAATAACCATGCATTGAAATGGACAGTTTAGTCGGTTAATGTCACACACAGTTGTTCTTTGGGAAAACAATGTCAGAAAGAATGTATTATTTTGTCTTCATTTTACGTTGTCTTCCTCCACAGCCTTATGTACAAATTGCAATGCATACTCTTCACGTGAAAGAGCTGGGGTTCTCGTGTTCTAAAGGGTCGAGGAGTACTGTATTGTACTTGCTAATGTTGTTTTATATATTGTAAAACTATGTAAGGTGACACCTTTTTAGTTGAGTACTTGAGTACACATAGATTTGAGTGTAGCAGACTGGTTGAAAGTGGTCAACATAATGTCGCTGAGAATATGTCTGTGTATTATTGTCTGTGACAAAACAAGATAGATAGCTACTATTGGGAATTCAAATAGGATTTTCTCTAGACTGAAATGAAATGACAGCATTTCAAAGGATCACAGTTCATTGGAACATCAGTGTCAATACTGGATTATTGAGTATTTATTATCAATATTTGAGTATTTGATTAGAAATGTGATTAGAAAAGAGAGGATACTAGAGGTAGTCTAAACTGGAGGTTCACTGGaagatatatcttttttttttaattatcacAGTTTGTTTTATAGAGAAAAAACACTTTATTGCACACCCCCCTTCACAAAGGTGACAACATTGTCGTCATGTAACAAACTTGAGATAGTGTCAAACAAGGTATTTGATgttttgtgattttatgaaaaaTGCTCAACAACCCCTTGACAACCCATTTTGTTATTACTATATTGCCCTCTTTGCTTTAACTCCTAAATGGGGACATCCAATGTGTTTATGGTGAACGGGTGCAATtgtttgtgaaaatgtgaaaaCAAATTAAATGCAGTGTTTCTATTCTAGATTATGAAGAAGAACTagtgaatatttaaaaaaaaaatgcatccaGTGCTGTATAGTATACATTTGATTATTGTTGCTGTAAATGTTTTGCTAGAATTTATATTCTATCAAAGTAAATATATTCATGAGAATCTAGAACACTTAAATATGTATTGGGAAAAAATAAACGAATTATCTTGCAATG

Function

GO: NA

KEGG:

id description
K08150 SLC2A13, ITR; MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979647 lncRNA upstream 26238 32667611 ~ 32667979 (+) True G1728269
TU1979643 lncRNA upstream 31961 32662049 ~ 32662256 (+) True G1728265
TU1979638 lncRNA upstream 38224 32655785 ~ 32655993 (+) True G1728260
TU1979637 lncRNA upstream 38623 32655389 ~ 32655594 (+) True G1728259
TU1979630 lncRNA upstream 49201 32644794 ~ 32645016 (+) True G1728252
TU1979949 lncRNA downstream 376469 33132561 ~ 33150958 (+) True G1728542
TU1980755 lncRNA downstream 491877 33247969 ~ 33253479 (+) True LOC110500282
TU1980812 lncRNA downstream 508802 33264894 ~ 33265132 (+) True G1729333
TU1980817 lncRNA downstream 514534 33270626 ~ 33270856 (+) True G1729338
TU1980823 lncRNA downstream 519955 33276047 ~ 33276267 (+) True G1729344
XM_036957681.1 mRNA upstream 57981 32613167 ~ 32636236 (+) False LOC110500271
XM_036957682.1 mRNA upstream 57981 32613167 ~ 32636236 (+) False LOC110500271
XM_036957684.1 mRNA upstream 57981 32613167 ~ 32636236 (+) False LOC110500271
XM_036957683.1 mRNA upstream 57981 32615273 ~ 32636236 (+) True LOC110500271
XM_021577549.2 mRNA upstream 58641 32613168 ~ 32635576 (+) False LOC110500271
XM_021577566.2 mRNA downstream 11903 32767995 ~ 32792331 (+) True LOC110500276
XM_021577571.2 mRNA downstream 37118 32793210 ~ 32834958 (+) True LOC110500278
XM_036957687.1 mRNA downstream 85697 32841789 ~ 32957803 (+) False LOC110500279
XM_036957688.1 mRNA downstream 85697 32841789 ~ 32957803 (+) False LOC110500279
XM_036957689.1 mRNA downstream 85697 32841789 ~ 32957803 (+) False LOC110500279
TU1979380 other upstream 531825 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 557521 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 559218 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1129623 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1185845 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 565361 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 954000 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2683197 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3285239 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3477030 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile