RNA id: XM_036957690.1


Basic Information

Item Value
RNA id XM_036957690.1
length 5803
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC110500279
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32841789 ~ 32957803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGCGCAAGTAGGTGACGCTGACTGTTGAAGTGACATCAACCCACCGCTAGTAGCCTGCTTCGGAGCATTCCTCTTCGTTCAGTCCACATGCATTCATTCTCGTTTCGCTAAAGGAGGTGTAGTTTGTTCGATTGTTGCCTCTGAAAGGGGTTGGACAAAAATATTTTTCACCATGAACAACTGTAATAGCTTTGTCAACATGGCGTCGATAGGAGATTTCGACCCGCTCAATGCTTCCATCCCCGCCACCAAAGTTGAAATCACAGTGTCTTGCAGAAATCTGCTGGACATGGACACCTTCTCCAAATCAGACCCAATATGCGTTCTGTACACACAAGGCATCGGCAATAAGGAGTGGAGAGAGTTTGGAAGGACAGAGGTGATTGAAAACACTCTCAACCCGGAGTTTGTTCGTAAATTCATCTTGGATTATTTCTTTGAGGAACGACAGAATCTGAGATTTgacctGTACGATGTCGACTCAAAGAGCTCCAACCTGTCAAAACATGACTTCCTTGGCCAGGCGTTCTGTACATTGGGAGAGGTGGTGGGATCGCTGGGCAGCCGTATGGAGAAACCTATGGTGGGCATTCCCGGAAAGAAGTGTGGAAACATCATTGTTAAGGCAGAAGAGATGGGAAACTGCAGGGAGTCAGTGATGATGCAGTTCTGTGGGAATAAACTGGACAAGAAAGATTTCTTCGGCAAGTCAGACCCATTCCTCGTCTTCTATCGCAGCAATGAAGACGGCACGTTCACAATCTGCCATAAGACAGAGGTGGTGAAGAACACACTAAACCCAGTGTGGCAGGCCTTCAAGATACCTGTCAGAGCACTCTGCAATGGAGACTACgacagAACGATCAAGATAGAATGCTACGACTGGGAAAGAGATGGAAGCCATGACTTCATAGGAGAGTTCACTACCAGCTACAGAGAGCTATCCAGAGGCCAGTCCCAGTTCAATGTGTatgagGTTATAAATCCGAAGAAGAAAGGAAAAAAGAAAAAATACCTAAACTCTGGAACGGTAACTCTGCTCTCATTCCTGGTGGATATAGAAGTCACCTTCCTCGACTACATCAAGGGAGGGACCCAGATTAATTTCACAGTGGCAATTGATTTCACCGCTTCAAACGgcaacccagcccagcccacctCCCTCCACTACATGAGTCCTTACCAGATGAATGCCTACGCCATGGCCCTGAAGGCTGTAGGGGAGATCATCCAGGACTACGACAGTGATAAGATGTTCCCTGCTTTGGGCTTCGGAGCCAAGCTGCCCCCCGACGGACGAGTCTCACATGAGTTCGCCCTGAATGGCAACCCCCAAAACCCATACTGTGCAGGTatagatggagtgatggaggcaTATTACCAGAGCCTGAAGTCTGTCTGCCTCTACGGCCCAACCAACTTTTCTCCTGTCATCAACCATGTGGCCAGGTATGCTGCGTCAGTGAATGATGGCTCTCAGTACTTCGTCCTTCTCATCATCACAGATGGAGTCATCTCAGACATGGCCCAGACCAAGGAGTCCATCGTCAACGCATCGTGTCTTCCCATGTCGATTATCATCGTAGGGGTGGGACCAGCAGAATTTGATgCGATGATCGAGTTGGACGGGGATGAAGTGAGGATCTCGTCGAGAGGAAGATATGCGGAGAGGGACATTGTTCAGTTTGTCCCGTTCAGAGACTACATCGACCGGACAGGGAACCACATCCTGAGTATGGCCCGTCTAGCCAAGGATGTCCTGGCTGAGATCCCTGACCAGTTCCTCTCCTACATGAGGACCAGAGGCATCAAGCCCTTGCCCACACCCCCTCCCTACACACCCCCAGGGTACCCTATCCAGAGCCCTGATGGACACCCATTAAATACCCCCCCAGGACACCCCCTGCAGACGCAGATCTGAAGGGTGCGGAGATGCCCCATGGTCTAAAACAACACCTCTTCAAAtatttctttgtctctctcctctctgcatcaCTCAGTGATAGGAGAGGCCTTCTtggctttctcgctctctctctcattgcactaatggagactgactgactggcagaaTGTTTTTACTGAGCGGTTCTACTTTGGAACGGGCAGATGGAGTCAATAAGGGCATGTTTACTTTCATTGTCAAGCGTTCCTCTGTCTGGACTTTCTGTATATCGGCAAATGGAGACACTCTCTGGGACACAGATAGACAGAGTCTGGTCTTCCCAGCTCACCTGGCATGGAATAGCAGAGTTAAGGAAAGGATGAATGGTGGAAGGAAGAATGAAAGGAGGATAGGAAGGAATTTCCTGGGGACTGGCCTTTTCAGGAGCAGAGTGGCGAAAAGGTTCTATTGTCTCTGGATGTGGAATCACTTGACTGTTGTACTGGAAATgtatttccttctctctccctctatctctggtCTCTTTCTATCGCTCTCTACTCTATCTCtggtctctttctatctctctctctctactctgtctctctattcttcCAACTCTCACTCAATGTTTACAGTACATGTTAATGATAATGATTTTTTATCATTGGACACTTTTATATAATATTCGTACTTCTTTCAGTATGAAACTTTGGAATATCAATCGATATTCTCTCTATCTCGCAGCGTGTTGTCTTTGCCACGGGAGTCAGGTTGAGGTTGCAACAGTGCAGGTCCAAGTAgccactgtattgtactgtactatactatgtgTCCGTTTGCATGAGTGTATCGTCAGAGCATGCATTGTGGTCCTACACTTCCCTGCCTGTCACTGCTCTCAGGCTTTGGGGTTCCATGTTTTTAACTTTTAACTCTGTTGTTGAAGCGCATTCTGCTCCTTTTTAAACTGCCTTGGCGATAGGGTGCCCATGCCAGCCACGCTGCGAGTGCCCACGGGTTTTCTCACTGTGTCGAGAACAACAGTGACTCAACCAACAGCATATTCCCTTCCAATCCATTTAAATAACAACACCTGCTCTCAGATCCAGTTTGAGACAACAGCAGAAGCCCAGTGGTCAAAAACAGTAACACAAATGCTTTCCTTCTGTTTGGTTCTTGTTCTTTTTTGTtattattacatttacatttgagtcatttatcagacgctcttatccagagcgacttacaggagcaattagggttaagtgccttgctcaagggcacgtcgacagatttttcaccgaGTCGGCTCagagattcgaaccagcgacctttcggttactgacccaatgctcttaaccgcttgTTTGCCTTGGAAGCTGATATTCTTAAGTATATTGTTTTAAGTTGCCTTGTTAAGGTAATTTTATTGTTTTGAGTTGTGCCAATAAATATGTAATATTATTTAATTGTTATAATGTTAAGCCCTGAATGTGTTGGCCCTAGATGATGGTGTCTGGTGGTTGTCATGACAACGTGTTCTTCCTAAATATTGTAATTCTCATCCCATAATACCAATTAACAAATACCCACTGAGGGCTAGGAGTTTTTCCTCACcgaggaaaaactcctggcccatAACCATTATACACTGTCAACCCTCTCTTACTACTTACAGCCAGGGTATCCTCTTCAATCTGCTGTCTTAATGGGCTTAGAGTTTATATCATCTGCCTTTTAATtattaataatactaataattatTATCATAATATAACTATTAGCTAGTGCTTGTATGGAGGTGGTGTGTAATTGATAACTTGATTGGTTACATATCAATCAATATTCCTTATCTAATTAACAGACATTGCAACACCACATTTATGTGTTTCGCAGTTGTTGCCATGTGTGCCACTGTCGGTCTGTTACCTCTCTGTCTGTTGCCATATCCTTACTGATAGACCGATGCCCTTTGCCACACTTCAACCACATAGCAacacctctgtttctctctctgtgtaattcCTCCTCCTGCCTCACTGCAGCTCTGTGGACGCTGCCTCACAGAGTGCAATAGACTGTGTTTCAATGCTTAAATAGGATCGACTCCAAGCCAATAATATTTGGcatggcaggaggagagggggatgagagaggagtgagagagggggatacAGCCCAGTGGGTTATGTCATTGGAgggtcgttccatgtcatttcatcATTCTATGTCAATGTTAAAggaatagttcacccaaattacaaaattacatattggtttccgTACGCTGTAGGCAGTCTATGGACAAAGTACGACAGCATCCCATTCTTTGGTTTTGTTCACCTGGCCACTGTTTTGAATTCTAACTTTTTAGCATTTGTcgcacaaatccaatgcaagtcagTAGTATCTATATTAGCATTTTCGTGCTTCATATCCAAATCATCTTTGACAAACGTCATTGATTTGAACACGAAGTGTGAAAATGCCAATATATATCCTCTTTCTTGTGTGTTTTGAGGTGGAACAACCCTGGACAGAAGTAGACAAACAGGTCAACCCTCTGATGTAGTCAGAAGAGTACGGGCATTAGTGCTACATGCCTGAGTCAACACAGTGCCAAACCTATACAGAGAGATGTTGGCTAGCCTAGAAAGAGAATAACCTCACTCGGTACATTCAACATGACAGTCTGTCATTTTAACCCATACATTTTACACAACATATATTTGATAAGAAACCTCTGCCTTGTTTAAAAAAAGACATACAGTAGACACACACTGTATTTTTATTTTCTCACAACTTTCACTGATGTCTTCTTTTGTCGTGTTTTTCTCACAAATTTGAAAGCCTTCCATAATTGGCGCTCTGCATCTGTAGTTGTAGCCTAGCCTTGAGTCTGTGTATCATATGAAACCCTAGCGAAATCCATATAGTGCACCACGTGGCTCTTGTCAAAATAAATGCATTATGTGGAGAACAGCTAGTGTGTTATTTGAAACCCAGCTTGTCTGAGTCTGTGCTGCAGTCTCCCACTGGGCTtgtagcagagcagagcaggaggtATCATTAGGACTTTGGGTCACAGTCTAGAGATCGTTATAGGCTCCCATTAACCACCCACAGGCTACTGACACAGTGTGGATACACACGTGTGCGCGTGCATatacacaggcacacgcacacgaacaccgctcacacacagacacacataccgCTGAGACCATGGTCCGCTGAGACCATCGTGGACTACTGACATTGTCATTTCTTAGTGCTTTCTCAGTTCACACTACTATGGAAAGGATCATTATTTTCTTTCACTGCTTTGCTAGTGCCACAACTCTTTCCATCTGCTTGccaagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcttgccGCCAGAGTTTAACAGACCATGTGAGTTGACACACGTGATCTTTGTTTACTAAAGATATACAAATAATATATTGTATGCTCATCATATCTACTTATAACGTGCACTATGTTTGCATGTACAGTTTTACATGAGATGCACCAGTTCTTTTTGTTATAATTGGGTGTTTTGGAAAAAGAAAATCTATGAAAATAACTGTACAAAATTGCCTTAAAAACGTTCACTGATTTCTTGGAATTTGTGCGATGCCTTCAGATATTGACTTGTTCTCTATTTTGTGTCAGTGTACAATATTGCTTTTCTAGTGTATATTTTCTTTGCATAACTTCATTTatgggggaaaaaatatattgtatttttGGAATCGGTGGTAAATCAGATGAAAGCCTGACTGAAGTTCTGATTGTCTGGTAATCCATATTATagatgactatttctgtattaaACTACTgatttttaaataaatattctTACTAAACACTAA

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979647 lncRNA upstream 173810 32667611 ~ 32667979 (+) True G1728269
TU1979643 lncRNA upstream 179533 32662049 ~ 32662256 (+) True G1728265
TU1979638 lncRNA upstream 185796 32655785 ~ 32655993 (+) True G1728260
TU1979637 lncRNA upstream 186195 32655389 ~ 32655594 (+) True G1728259
TU1979630 lncRNA upstream 196773 32644794 ~ 32645016 (+) True G1728252
TU1979949 lncRNA downstream 174758 33132561 ~ 33150958 (+) True G1728542
TU1980755 lncRNA downstream 290166 33247969 ~ 33253479 (+) True LOC110500282
TU1980812 lncRNA downstream 307091 33264894 ~ 33265132 (+) True G1729333
TU1980817 lncRNA downstream 312823 33270626 ~ 33270856 (+) True G1729338
TU1980823 lncRNA downstream 318244 33276047 ~ 33276267 (+) True G1729344
XM_021577571.2 mRNA upstream 6831 32793210 ~ 32834958 (+) True LOC110500278
XM_021577566.2 mRNA upstream 49458 32767995 ~ 32792331 (+) True LOC110500276
XM_021577567.2 mRNA upstream 85697 32694217 ~ 32756092 (+) True LOC110500277
XM_036957683.1 mRNA upstream 205553 32615273 ~ 32636236 (+) True LOC110500271
XM_021577549.2 mRNA upstream 206213 32613168 ~ 32635576 (+) False LOC110500271
XR_002470078.2 mRNA downstream 92672 33050475 ~ 33053507 (+) True LOC110500281
XM_036957692.1 mRNA downstream 96257 33054060 ~ 33166691 (+) False LOC110501067
XM_036957694.1 mRNA downstream 96257 33054060 ~ 33166691 (+) False LOC110501067
XM_036957695.1 mRNA downstream 96257 33054060 ~ 33166691 (+) False LOC110501067
XM_036957696.1 mRNA downstream 96257 33054060 ~ 33166691 (+) False LOC110501067
TU1979380 other upstream 679397 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 705093 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 706790 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1277195 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1333417 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 363650 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 752289 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2481486 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3083528 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3275319 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile