RNA id: XR_002470078.2


Basic Information

Item Value
RNA id XR_002470078.2
length 2126
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110500281
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33050475 ~ 33053507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCTGACTTGAATCCTATATTGAAACATTTATTATTGTGATATGCAAATTCGATTGGTGGGCAGAGGGCATGGTTTGTTGTGGACAAAGACATCACTACTGGAGAAGTGTTTGTGGGTCCGACCACCAATCACCCGGCTCTATTCAGAGACGAGGTACGAACAGATTGTTTCCATTGGATAACAGAGGACCCTCCCACTGAGCTGATCCAGACTAAGATGGAGTGTCTCTTCCGCTTCATCCACTAGATGCCTCTCAGTGAGTCACATGACACGTTAGGGGCAGACACAGTTTGTAAGGAAGTGTCATTTAATAATACCTTTACCTCCCATACGACTTAAACAGATTTAATGGGTTAAAAAATGTACACTTCGAAAGTGTTAGTGACATGTTAATAAAGTGTTGGTAACTTGTTAATAACACAGCTCCTTGCACTGTGACCTTGAACATGAATGGCTCTGTGTGGATCATGCTGTCTCAGTCAATCAGAGCACTCACACCAGGACAGTTTGCAGTGCTGTACAAGGGGGACGAGTGTCTGGGCAGTGGGAAGATCGTCCGTCTGGGCCTCACAGAGCACACACTCCAACAGGGACGAGACCTCATGAAGGAAGCCCCTGTGGCCAAGGAGAGGACTCCGGAACCAGCCAGCTGAGCCTGAGAAAGACTTCCTAGGCCCACTATCAATATGGACCTAACCTTACCTTCCAGACTTCAGTCACACTGCTGCTGGACAAGACTACTGTACTCTCACAGGCCTTATCCCATTCTCTGAACCACTACtgtagaacagaagagaacactGATCATGCTTTTGGGTCTGTCCACTCAtcaaaaaaacacacactcaaaaactTCCTCTGTACTGATACTTCTTCCTATAATGGTACTTGTGATGTACAGTATTATTTGATAGTGTGGACTGTGTAAAATCATACACATGGTAATTCAttgtcttatttatttatttggacgGATTATTAGAAAATGTAAAATTTCATATTTAAAAAATTATGGCTTTTGTTAAAATCCAAACAAACAGTGCCTTTTCCTTTTGGTGTCATTTCACCTAAACACATTTAGCATGGAACTGCATTCTTTTGAACTACTGTGCAAAATATCCGATATGTAAATAGAGAATAACTTTGATTAAGTGATTAAACTTACGATTGTTTTAAATAAGTGATTTCTGTGGCCAGCAGAAAACCTCACTGAAGAAATCCAGTTAATGTATGTGAGTCACTTTACATCTGTTTCCCGTCCTATTCCACTCTCTCCAAAAGGGGGCGAACACGCATAAGTTATACTGAGTCTTCTAAACTTTTTCAGATGCACTGTTTCTGGTGTTTAAAATAACAGTATTGATGTTATACCAAGTGGAATGTATAGGTTACTGCCTAAATAATGGAAACACTGGAGTAAATGatggatacaaagtatattgaaagcaggtgctgcCGCACAGGTGTGGTTCCGGAGTTCATTAAGCATTTAACATCACATTATGCTTAGGGTGTATAAAATGCTGGGCAGTCCATTATTTGGACTGCCATGGCCATAGGATGTCAATGCCCCCGTCCACAGGGCACGAGTAATCacaatggtttgatgagcatgaaaatgatgtaaacTATAAGCCATGGCTGTCACCAGATCTGAAcccttatgggagattctggagtggtgcctgagacagcgttttccaccaccatcaacaaaacaccaatttatggaatttcttgtggaagaatggtgtcacatccctccgatagagttccagacacttgtagaatccatgccaagGTGCAATGAAGCAGTTCTGACTCGTGGtgacccaacgccctattaagacactttatgttggggttttctttattttggtagttacctgtaCCTGTTCAATGATTTTGCAGAGTATGCATTATTTCATTTAGTTCCATTGCATACCTTCATTTTCAATGGTGATGTGATTTCCATGGGAATAAAACCTACAATTTGCCATAAGTTGAATGAAAGCGCCATACATTACAAACAGGTGCAAGGGCCACTTTTTCATTAAATCAGGCTACATTAAGATGGATACCAACATAGATGGTAGGATGGAAGGAAGCAATGGATTATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979647 lncRNA upstream 382496 32667611 ~ 32667979 (+) True G1728269
TU1979643 lncRNA upstream 388219 32662049 ~ 32662256 (+) True G1728265
TU1979638 lncRNA upstream 394482 32655785 ~ 32655993 (+) True G1728260
TU1979637 lncRNA upstream 394881 32655389 ~ 32655594 (+) True G1728259
TU1979630 lncRNA upstream 405459 32644794 ~ 32645016 (+) True G1728252
TU1979949 lncRNA downstream 79054 33132561 ~ 33150958 (+) True G1728542
TU1980755 lncRNA downstream 194462 33247969 ~ 33253479 (+) True LOC110500282
TU1980812 lncRNA downstream 211387 33264894 ~ 33265132 (+) True G1729333
TU1980817 lncRNA downstream 217119 33270626 ~ 33270856 (+) True G1729338
TU1980823 lncRNA downstream 222540 33276047 ~ 33276267 (+) True G1729344
XM_036957687.1 mRNA upstream 92672 32841789 ~ 32957803 (+) False LOC110500279
XM_036957688.1 mRNA upstream 92672 32841789 ~ 32957803 (+) False LOC110500279
XM_036957689.1 mRNA upstream 92672 32841789 ~ 32957803 (+) False LOC110500279
XM_036957690.1 mRNA upstream 92672 32841789 ~ 32957803 (+) True LOC110500279
XM_021577571.2 mRNA upstream 215517 32793210 ~ 32834958 (+) True LOC110500278
XM_036957692.1 mRNA downstream 553 33054060 ~ 33166691 (+) False LOC110501067
XM_036957694.1 mRNA downstream 553 33054060 ~ 33166691 (+) False LOC110501067
XM_036957695.1 mRNA downstream 553 33054060 ~ 33166691 (+) False LOC110501067
XM_036957696.1 mRNA downstream 553 33054060 ~ 33166691 (+) False LOC110501067
XM_036957693.1 mRNA downstream 554 33054061 ~ 33166691 (+) True LOC110501067
TU1979380 other upstream 888083 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 913779 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 915476 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1485881 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1542103 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 267946 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 656585 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2385782 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2987824 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3179615 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile