RNA id: XM_021577577.2


Basic Information

Item Value
RNA id XM_021577577.2
length 5340
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC110500282
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33180674 ~ 33253523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcctcactctcatcATCCCTCTCTATTGTTGTCCTCCCCCCATCTCCTCTCGATCCTCcttctcgccatctctctctgacatttgaGCTACAGAGCGAAGGCTGTCTGTTTAGTCTTTCATTTGTCTCACTGCCTTTATTCTTCATCCCTTGTTGATCACTGGCTGCATCCTAAGTAGGGCATCtttccttcattcctttctctcTACTCATCCCTTGTTCTCGCTTTCtcatgcggtgtgtgtgtgtgtgtgtgtctctcgtgGACTTGACAGGCAGCATAATAGATTAAGACACGCTGCAGTCAGGACTGCTGCAGGGAGAAGAAGCTGCTGCAGTGTATGTGTTGGtccgtgtgtgtctttgtctgtggcGGGAGCCTCTTAAAGGGACACCCTGCCTGCGTTGGTCAGTTGGTGGCTGGTAAACCTGCAGTGGCTCAGAATAGCAACACAGCACGGTAGCTTCCACACTCTCCTCCCTCGTTTCAGTCTGTCGCTTTCTTTAACACTCCTATTTCTGTTGCTTTCTCTTGACACTTCTTTTCATCTGctcctccactcttcccctctcacCATCTCGCTCACCTGGTATTAGTCTGGTAATCTATGGAGTAATGCGGTTACGTGGTCTAAAGATCTGAGTCAGTCAGTTAGGGAGAGTGGTTGAGTCATCAGTGTAGTGTTTAGACTAGAGGACAGAcagtcggtagggatctcctttgCAACGCGTTTCCAAACGGGAGGGAAACGCACTGCCTGCGGGTTCGGGGGCTCTCACCATGGCTGCAGCATTTCAAGACTTCCAGAGGAGCGAGTCAGACCGGCTAAATGAGATGAAGGGTCATCTAGAGATTGCCTTACTGGAGAAGCACTTCCTACAAGAGGAGTTGAGGAAGCTACGAGAGGAAACCAATGTGGAGAAGATGAAggaagagctggagagagagcgagggaagaggCTCGACCTTGAACTGAGGATGAACGAGGTGCTAAAATCCagTTTGGAAGACTCGCCGCCACAGCCTGCCCGTAAACCCCCGTCTCCAACGCCTGCTGCCAATGGCAAAGACACAGACAAAGAGAAGCCGCCACAGGGGGAGACCCTGTACTTGCGGGCGTGGAGATGGCTCTACGACAGGGTGGGGGTCTACATAGAAGACTTCCGCTTCGTCCCGGAGGAGAACACTGTGGAGGCTGAGGAACCGCTAAGTGCTAAAAGgctaaCAGAAAACATGAGGCGACTCAAGCGAGGAGCCAGACCGGTAACTAACTTCATGAGGAACCTCTCAGCCTTATCCAACTGGCACTCAGTATACACCTCAGCTATTTCCTTCATAATCTACATGAATGCTGCGTGGCATGGCTGGGCCATCCCCATGTTCCTCTTCTTGGCCATCCTGAGGCTCTCCTTGAATTACCTCATTGCTAAAGGTTGGAGGATTCAGTGGAGCATTGTGCCGGATATTACGGATCCTATAGAACCGTCAAAGGATGACTTGACTGTGTCTGAAAAGTTCCAGTTAGTGCTTGACGTTGCACAAAAAGCCCAGAACCTTTTTGGTAAGATGGCGGATGTTTTGGAGAAAATAAAGAAcctgTTCATGTGGGTGCAGCCTGAGATCACTCAGAAGCTCTACATAAGCCTGTGGGTTGCCTTTCTCTCCTCCTGCATACTGCCCTTTAAACTTGTGGGCTTCATGATTGgACTGTATGCAGGGATCAAATTCTTCATCATAGACTTCTTGTTTAAGAGCTGTCCCAAGCTGAGGGACAAATATGACACACCTCACATCGACTGGAACAACCTACCAACTGATCCACAGCTGAAGGAGAGGACCAATGCTACAATGTCCCGACGGctgtctgGGTCTGAGAAGATTCAGCCTGTGGTGGCAAGAGGTAGCTTAGCAACCGTCCCATGCGGTGTAAACCTGGATGGTGACAGCGCCAGGATTCATAGCACCAAGAAGGGAGCCTTTCATGAGATATTCAATGTCTCAGAGAATGAGCGCCCTCTACCAGTGTGTGAGAATGGGTGGAGGTGCTGCCTCATCAACAGAGACCGGAAGATGCCAACCGACTACATTCGAAACGGCATGCTCTACGTTACAGAGAAtTATCTGTGCTTCGAGAGCTCCAGTTCCAAATCGGCCTCCTCCAAGAAGAATAAGGTTATTAAGCTGGTGGACATCACAGATATCCAGAAGTACAAAGTGCTGTCTGTCTTACCTGGATCTGGAATGGGAATCTCCATAGCCACTCCCTCCACACAGAAGCCTCTGGTGTTTGGTGCCATGATCCATCGAGACGAGGCCTTCGAGGCGATCTTCACCCAGTACATGAAGATCATTACCACCTCCAGGCCACCCTCGGGCAGCCCTGAGCTGTAGCCCTGCCATCCCCATGGACAGAGGGCTAGGCTGGGGTCAGGGCTGGGCCACCTTCCCCTGAACCCTCCCTGGCTGGAGGAAAGTGACAGGACACacacctcttctcctccctctcttatttacagtgactggACAATCTTCTCTTTTATGACTGAGAGGTGTCTGTGCGCGCGTCTGTCTGGAGGTGGGACTTGTAGTCCAATAGGGATGGTGCACACATTCCTGCACTCTTTCTATGTCGGACCGTGGATGAGGGGGATGaagaagagggggtgggggggagacaTTTTTAACACACATCTCATCATAGGAGAAGGAGCTGGCTCTCCTGCCTGCTTGCCTGACTGACAGCTTTAATTCgcttcagaggtgtgtgtgtgtgtgtgtgtgtgtgcctgcccaGACAGCGTGCGTCTCTACTCACCTgtcttctttctgtctttctcgcAAAGTCTGAGTCAGTGTAACTGTTACTGCTGGTCTTGCACGGAACCGTACAGACAGTATGCCGTACGGTAGCTAGATGTTTGTGTAGAAAACAGAAAGCTGTGAGAAAGTCGAGCCAACATCTGAACAACGTTCAACATGACACGAAGCCTTTTTCCATTAGTTTACATCGTTGCTGTGGATTTTCTGTGGAGACACGCACGTTTCAGCAACAAACCGTTTGCTTTCAGGTGTCTTTTTGCATATGACGTGTGGTATGTGTTATACtttcaacactcactactgaactgtactgtgtcACGTACAGTAGTGGGGACCTTGGCGATGATGTTCATtgtgaaatgttttcaaatgccTTTCTTTTTGAATTCTGCTTATTTTTGTAATAACCAATGGAATGATGAGGATCTGGACTTTGTTAAAGTATGTCCTGGATCTGTGGATTGTGTTATAAAACTAAAGCACACTCGCTGTTAGAGAGAGTCATAACAGACCTAAACCCTGAATACTGTGTCTAAACTGAAGGTACATGGTTTAAATGTAACATAACTGGTTCAGTGAACTAAACTTGTGTGCTGAGTAACCCCGAGGCCTAAGACCTAAAGATGAGTTAATGCCTTGGCTTTAGCCTCGTAGGCTAACACATTCTTAAGGTGCATACTGTAGGTCACATAAACATACTAAGGCCCAAAACCTGTGTTTACTTCAGTCTTTAGTGACATGTTATGgtatagtagtactatagtagtCCTACGGTAATACCAACCTGTAGTATTAACACTGGAGTGGTCAGATGTGTACAATGTGCTGTCCTGTTAAATTACTTCTTAACTTGGTTAACTTGACCAGTAACTAGTTAACTCCTGGATGACTTATCTCAGTATTTCAATGCAAAATCGAGTCAGTCAACTGGTCTAGTTCTGTAGTATTCATTGACAGCAGGAGGAAGTAGAAGTTTGAAAGGAATATTTTAATGTCACTTTATTGTCACCATTCTAGATTAAAAGCTGGTCTTTTATTTCTCAGATAGGTTTGATATGTAGAATTGTAACGAATGCCAAACCAAGTGGATGTGCACACTTTCTGTAGTTTTGTAAGATGGCTGGAAGAGTTATTGTGGGTACATATTTCTCATTTATCGTTTACTGCAAATGAGAGGGGAGGTTATACCATGCTCTCAGATCTTTTTTTGCCTCCGCACAACAAGCTAGTCCCCTAAAACGCATTCATCTTCCCACACTGTTAACAAGCCCATATAGACTTAGTCAGTTATTGTCTTACAAAACCCAATCTCCAGTTGTGTGACAGCTGGATATGAAATTTCATTTCTGGAGATGGTCTATTGTCTAAGGAACTCATGCTGTTGGTGTGTTGATTTTGAATGATTGTCtgactgtactttactgtagtcttaATGCTTACCTGGAACCTTTCTTAGTCGATTAGTAACAACTAACTTTGAAATCTGCAATCAGGGTCTGTCCTAAAAGAAGCACactgaatgtattgtgttactgcTGTAAACGCttagttacattttttttgctgccaaaatgtaatttttctttctttcttttactGCCCGCCATACTCTGCCTACACTGATGTTTACTGAAGGTTGGGTTAAAAACCTTAATTGatttgtttttcttttgtttggaATGTCGGTTTGAGCTCCTAGCCACAGGTGGAGTCATGAAGACTGGACAGATATCTTCCTTTTGCGTTTGAATCACTGTGTCAGCTTTTAAATCTGCTCGGACTGGTCTCAGGACAACCTCTGCTGTGCACCTTCATCCCAACAGCAAACGTAAGCCTGATCTTTGATCTGTTTTATAATGCTTTAATAGCTAAAGCTAAAGTTTAGCTCTTCTGTTGAGTTTGTTGTCATGGCAAATACTATACATGTACTGCATAGCGTGGTAATGAAAGTCAGGAGTTGGATCAAGCATATAgtaacagatctgggatcaggctaaaaGTAGATAGACGGTGACATCAGAGAACATTCTAGTCAGATTATATTGTACGTCAATCACGCTGCAAAAACAACTGTCAGTGATCGTTCTAATGGTAGTGGCGTGCAGTACATGCTTCAATCATCATCTTTTAGCTTTTTGGATCACTCACAGGCCTTCcttacagacaggcagaggtCGTCATGGCGACTCCGAGAGCTTCTGTCCACTGGTTTCTATTGGTTTCCACTTCTGTGGCTCTCGTTGTGTTAACCAAGTATTAGTTGTAACGCAAATGTAAACATTAGTCAATTACTTTCATGATATtcccatacagtatatcactgcaAAGTTCAATATACTGTAATCATCTGTCAgttgtgggtaattatttgtCATCTGTGGGTCCGAGGACTAAAATGACAAAAAAGGAATTTATATACAATAACGTAATCTATTGATTTTTAAAGAGAACAATGTCCATTGTAAAATATGTGgtgtccattttttttatttaaataaaatgaATTAAGTATTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979949 lncRNA upstream 48596 33132561 ~ 33150958 (+) True G1728542
TU1979647 lncRNA upstream 531575 32667611 ~ 32667979 (+) True G1728269
TU1979643 lncRNA upstream 537298 32662049 ~ 32662256 (+) True G1728265
TU1979638 lncRNA upstream 543561 32655785 ~ 32655993 (+) True G1728260
TU1979637 lncRNA upstream 543960 32655389 ~ 32655594 (+) True G1728259
TU1980812 lncRNA downstream 11371 33264894 ~ 33265132 (+) True G1729333
TU1980817 lncRNA downstream 17103 33270626 ~ 33270856 (+) True G1729338
TU1980823 lncRNA downstream 22524 33276047 ~ 33276267 (+) True G1729344
TU1980827 lncRNA downstream 31168 33284691 ~ 33285245 (+) True G1729348
TU1980831 lncRNA downstream 40185 33293708 ~ 33293947 (+) True G1729352
XM_036957692.1 mRNA upstream 32863 33054060 ~ 33166691 (+) False LOC110501067
XM_021577578.2 mRNA downstream 76404 33329927 ~ 33515988 (+) True LOC110500284
XM_036957699.1 mRNA downstream 455938 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 455973 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 496036 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 1055576 34309099 ~ 34317797 (+) False LOC110500288
TU1979380 other upstream 1037162 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1062858 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1064555 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1634960 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1691182 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 67930 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 456569 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2185766 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2787808 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2979599 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile