RNA id: XM_021577578.2


Basic Information

Item Value
RNA id XM_021577578.2
length 6249
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110500284
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33329927 ~ 33515988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATAGTCGGAACTATGAACCTTGGAAATGCCCGATTTGCTGAATCGTTCAACGCGGCACGTAAATAATTTAAACCAGGAAAGTAGTCGAACATTTCCGAGTTTCTAGTATCGATTAGCACATAAAAAAATGTTATTCAtttttaaatttgttttatttaataccaATGTAGAAAAGTCTGTATACATACAATAAGTACATAGACAATGATACCATGTGCTAGGGGGTAACGTTACAACAAATTACAGATTCTACAAAGACCTTAAAAGAAACACACATATTGATTGTTTTAACAGCTTTCTTATTAGAAGAATGTAGAATGGTCTTAATGTACTGCTCGAATTCCTTATAGAAATCACGGAAGAGTGTTTTTTTTAATGAGTGAATTTACATGTATGAATGTGAAACTTTGCCATTAGCACAATTAGATTTATGAGGTAAAATGCTAGTACGTGAATTCAGCAACTGACAATAGTTGAAACTGACGTCAACCGCGTCTCAAATCACATTCGGTAGATCGTACTTGTGATTGGGCGATGGCTAGGAAATGTGAAACGGACCAATCCCTGCAGCGCTTGCTCAGAGGAACCCAGATCCAACATGGCGGAGGGAACTGGGTGTAAATAAACACTCGTTAGACGTTTTAAAAGCTATAGCTAACAACACTCGCACTTTTGTGTATATGACATATTGTACCGGGGAAGTAAAATGTCAACTGACGGAAACAAGAAACAATTCTGGAAAAGAAACACAGCTAAGGTCCCTGGCAGCATACAACATGTGTATGGTGCTCAACATCCTCCTTTCGACCCTCTTCTGCATGCTAATCTAATCAAAGCGGGCAACAAGCCCCAGACGACACCGGGAGGGAAGCCAAAGAAAGCCACCACCTTCCAGGAGTTTGAGAGCATCACCAGCGATGCCTGGGACGTGGGGGACGACGACGACGAGCTACTCGCCATGGCCGCACAGAACCTCAACATCGAGGTCGTCATGGAAACCGCCAACAAGGTTATCGAGAACCACAGcaagcagcaggagaagcagagACAGGACGATGCCGGCGCGgcagagctggaggagagagaggaagaggacgcAAATGAAGAAGaggtggaagaagaggaagagcagggggaggaaggggaggaatcAACCCCTGAGGTGTCGTTTGCCTCTGAGCCCAGCCCGCTTGGTGATGGCAGACTTGTGAAGTCACTGAGTGAGGCCCCCATCGGATCACCTAAGGATGTGTCGCTCCACAGACAGCAGTCCCTGCCCCACCGGCCCACCATCCCCATGGTGGCTCGTATAGCTGACCAGAACACATCCGGGACCCCAGCCATGACGGAGAGAGAGGCCTCTCGCCTGGACAAGTTCAGACAGGTCCTGGCTGGACCCAACACTGACCTTGAGGAATTACGAAAGTTGAGCTGGTCTGGAATTCCTCGCCAGGTTCGTCCAATCACGTGGAAGCTCCTATCGGGTTACCTTCCTGccaacacagagaggagagagagcacgctacagaggaagagacaggaataCTTTGGTTTCATAGAACAGTACTACGACTCGCGCAATGACGAGCACCACCAAGACACATACAGACAGattCACATTGACATCCCGAGAACCAATCCCCTTATTCCTCTCTTTCAACAAGCTTCTGTCCAAGAGATCTTTGAGCGTATCCTGTTCATCTGGGCGATCCGCCACCCGGCCAGCGGCTACGTGCAGGGCATCAACGACCTCGTCACGCCTTTCTTCGTCGTCTATGTCTTTGAGTACATCAaggaggaggtggagaactTTGATGTGTCCAGCTTGCAGGAGGAGACTTTGCGGAACATCGAGGCTGACAGTTTCTGGTGCATGAGCAAGCTGTTGGACGGCATTCAGGACAACTACACATTTGCACAGCCTGGGATCCAAAGAAAAGTCAAGGCTCTGGAGGAGTTGGTCAGCAGGATCGATGAAACGGTGCACGTCCACATGCAGCAGTATGAAGTGGAGTATCTCCAGTTTGCCTTCCGTTGGATGAACAACCTGCTGATGAGAGAGCTGCCGTTACGCTGCACTATACGCCTCTGGGACAcctaccaggCTGAACCAGAGGGATTCTCTCACTTCCATCTCTACGTGTGTGCTGCTTTCCTGGTGCGATGGAGGAAAGAGATTCTGGATGAGAGAGATTTCCAgGGTCTGATGATCCTGCTGCAGAACCTACCCACCATGCACTGGGGCAACGAGGAGGTCAGCGTGCTCCTGGCCGAGGCCTACAGGCTGAAGTTTGCCTTCGCTGACGCCCCCAACCACTACAAGAGATGAGTCTGGCCCATGTGGCCCCTGACAGTTAGCTACTGAACCCCTGACAGAGGCCCCCTGGAGGACGGATGGACCCCCTCCTCGACTTTCTTGTCCCTCGGCAGTCCACGACCATTGCTAATAGTAGATTAAAACAAAAACCACATttaggtcccaaatggcaccctattctctacaaagtgcattacttttgaccagagccccaagtagtgcattatgtagggaatagggtgccatttgggaagcatccaACCAGTGCTTCTTGGTATGTGTGTACCTTTCCAACCGACTGTTCTTCTTAACTCCTCTTCTCTTTGTTCTTAACAATGAAATTACATTTGTGCAACACTGCAACAACATCAATGCCTGTCCCATCGAAGTAGACCCCAACCAAAAAAGAAAGACCTCCAGTCAGTATGATAATGGAGATCTTGCTGCAGACCCACGGATGACTGTTCTagactgtcctgtactgtactgtttgtCCCTGACTGGCCACAGCAGCCTCAACATGTCCCGAGACCTAATGAATTAATTGTAGTCCTGAACTAAcccagtgtgtgggggggggggggggggggggggatagagagcGAGACCTTCTGTACTAGGTTGATATCTGTCACTTTTAATTCCTAAGGGAACTGAGGACACACACGTCATCATTCTAGTCATCCCTAGTTGGCATCGAgctcttctctcatctccacgCTCCATGCTTTCAGTTTAAGACAAGCGGTCAATCCCCCAGAGACAAGTGGGTTTTTTAGTTAAAAACAGAAACACATTCACATAAAAGTCAATAATTAGCTAATAGGGAAATCATAaagtatgtattattatggatggTTTCATTCTGACTCTGACATGGTCCGCAGGGCTGGTCTAATAATTTAAGGTCTAACCACACTCTCTGAACTCTATTGTATTATGTCAGATATTTGTCGGTTGGCTGAGGGAGGGACGAGTGTCGCGTGACTCTGCCTGACTAACTCGATCAGTCTATCAGTTAGACACGTTGGCACAGCACCATGCAGTGGTGAGCAGTCACCTTTTAGGCCAGGAGATTTCCCAGTTAGGTCACATggtctgaaaaaaaaaaacaactccagGCCGTAGGCCTTTACACTCGTAACCATATACGGGTTGATaatggcagatttgggcactAGTAAACAActaaattggaacgcagtggctgtacagtaacgtGCTATACATGTCAGAGGTCTTGCTCTGCGCTTCACATCGCTGTATGGgtttttgactgacagccgttctgaacttgagcacctcgCGTGACCTTGTtgtgaatgagaatgtgttttcagTCAATTTACCGGGTAAAACTGAAAATTGCTGTACATTTTTTTGAAAGGTGAGGCAtagaggattataataaataccgttTTGTCATGCAAGCAAGACAAACACCCATGAGTTCAAATATGCACTTCACATttcataaaactcatgtcatatatagtgtcaacgtttatgatcactatgtttgatatACAGTTACAAGATGGCATGGTGTCATACACTgcgttgttctgaacagaatgagcctatgtttgtctattgtgaagaGAATTTGCCACGGCAGACGCACTTGAATGCACTCAAGACTCCTTTCTTTGCGCACCAAGATTATCATCTGTTTTCCTGAATTGCATTGTGAAAGCAAGTAATATCacattttataacttagctagtcagTTTTGGCagtagaacaagctttcaaatgaggcccacctgacccagattgcgatttataatggaccgtttttggactgcgtaaacaacaacagtaattgtgtgatgatgcgaatgcagggttgtgttccaaacaaaacaactacaagtgtatTTGcgctagttcctcaacggcacagctaggagagctcataaaggcaccttatagttgaagacaGTGCTTTGAAATGACCTAGGAACTGTGGACACTGGAGAGGTATGTGGCCACaaggagacaccagttagtcctcgcTCTCAAACCCTTGTAATcgttttgtcttatgttgcacctaccccacattttccaggaatgttcctatcatgttactgaatatatccagagtattttcagattttgttaCCAACAAATGCAGtgaaagtacagtaaatgtagaACGCACATAAAATCATGTGTAATCATTTTCCCATAAACTCctaactgttccctttcaattgctaccatggtcaTGCATATgtttttcatatttcttctgtaagaaacatttcaatttagccctatccatattgTCCGATTTCaacgagtgtaaagggttaaaaatGACTCCCCAAAACACAGAAATAGGACCACGAGTTTTGTTTTTTTCTGGTCAGGCTACTTGGTCAGGCAAAACTCCTGGACTACGACAATTTGTAACTGCTCATAGCCCAGAACTAGGGCCTATAGTTAGATTTTTGGAAAATATTAACTAAATTGCTGACATGGGTCATTGTATCCAGTCCAGTAGCTTTGTTGGTTATTCAGTCTATTCATAAACACTTACTGACTGAGGGCGTTAGGGTGTAATACATTAACTCTCTCCGTTTGCCTTCATTTGACTGCTCAAACTCAACTCAGTTCCACTcctgtttttcattgttcccctctaatcagggactgatttagacttgggacaacaggtgggtgcaattaatgatCAGGTTGAACAGAAAGCCAGCAGGCTCTGCACCATGTGGGGTAAGAGTTGTATACCCCTTGTGTAGAGGATTGATATATGATGTAAATTAGATGTTGAAATAATATGTACAACTTGTATCATCAAAAAACATCCTGTCAGGGAACACTGAATATCAATAATTGTTGCATGAGCCCCTCGATGATGTGTGTTGTTGATATGTGGGGTTGGGAGTGTATGTATAGATGGGGCAGCTTAATACTCTCAGTATTTGAACTTCCTCAGCTTCTTTTGATCATGTCGGTAACGTTTTTGCGCTCCATGTCAGTTCCAGGCCCAATTTCCTATTCTCACATTGATTAGAAATTTAAAAAACTGCACTTgataaaagtacattttcttcCCTTTTTTTGTGCGAAATATATTATTTGCAATCCGCTTTAAaaatcagtctctctcctcccttttttaCATACTGTTTACATGAGCCTGTTAAGTTGTGCCTAATGTAGAGAGAGCAGATCATCATAgatatttattttaccttaatttaaGCTCTGCAAATGAAACGAGGATGTTTATTCAGTTGATGTGTTCACTCTCTGTGTTTGCTAAGCCATGACAGTGACTGCAtccaaaatggccccctatttcctatatagtgcactactttatgggctctggtcgaaagtagtgcactatatagggaatagggtgccatttgggacgcaaccagtGAGTACACAGAATCACATCGGTAAGTCTAGCAGCTGCCTTCTCTGGTATCCTTATGTGTTTCAACTTGGTTTGATGCTCCCAACAAACCTTTACAGACACACCTTCTGTAAAAGTCACAAGCCcttggttaccatggttactgTGGTGACCAGGTGTCCGTCTGCTGGCTGGAGCCCTCGGACACACATACTGGACATTGCGGTCAGCATCTCATGGGGCATGACCTAACATGTTTGGTCTCCCTACTAAAGCTTTTTTTTTAAGGGTTGAATTTCACTCTTTCTTTTGTTCTGTTTCTTTTCAGAGATGTTAAAATGTTTCTGACCAAACTAAGACTGGTCCTCTTTCCCTTCTGACTTCTGAAGAGTTAAGACATCTGAAAGTGTGAATCTCATACAGCGGAGAGGgattgtgattattatttttttaaatgtatgtgtaCAGAGCAAATGAATTTTGAAACAAAGATCTGTAAATAGAAAAGTGTAAATAAATGCTATATATGACCAAA

Function

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1980941 lncRNA upstream 10881 33318824 ~ 33319046 (+) True G1729462
TU1980838 lncRNA upstream 20183 33309524 ~ 33309744 (+) True G1729359
TU1980831 lncRNA upstream 35980 33293708 ~ 33293947 (+) True G1729352
TU1980827 lncRNA upstream 44682 33284691 ~ 33285245 (+) True G1729348
TU1980823 lncRNA upstream 53660 33276047 ~ 33276267 (+) True G1729344
TU1981103 lncRNA downstream 19889 33535877 ~ 33536136 (+) True G1729617
TU1981267 lncRNA downstream 23956 33539944 ~ 33540150 (+) True G1729769
TU1981279 lncRNA downstream 29490 33545478 ~ 33545693 (+) True G1729781
TU1981280 lncRNA downstream 29912 33545900 ~ 33546114 (+) True G1729782
TU1981286 lncRNA downstream 36989 33552977 ~ 33553203 (+) True G1729788
XM_021577574.2 mRNA upstream 76404 33180674 ~ 33253523 (+) False LOC110500282
XM_021577575.2 mRNA upstream 76404 33180677 ~ 33253523 (+) False LOC110500282
XM_021577576.2 mRNA upstream 76404 33199553 ~ 33253523 (+) False LOC110500282
XM_021577577.2 mRNA upstream 76404 33199554 ~ 33253523 (+) False LOC110500282
XM_036957692.1 mRNA upstream 163236 33054060 ~ 33166691 (+) False LOC110501067
XM_036957699.1 mRNA downstream 193473 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 193508 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 233571 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 793111 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 793127 34309115 ~ 34317797 (+) False LOC110500288
TU1980944 other upstream 8166 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1167535 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1193231 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1194928 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1765333 31564135 ~ 31564594 (+) True G1727220
TU1981477 other downstream 194104 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 1923301 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2525343 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2717134 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 3241001 36756989 ~ 36758883 (+) False G1733187

Expression Profile