RNA id: TU1981475


Basic Information

Item Value
RNA id TU1981475
length 2201
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110500285
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33709461 ~ 33869016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCTCCTGAAGAGATGCGCTGAGTCACGCTGACGCAGTGTCTCAGATCCATGTAGCATTTTCAAAATTAAATGAAATCCAAAGTTAAATCCAATTGTTGCAGTTCATTTTCGAGTCTCTCTCTTGCTCAAAATCGCAAGTTGAGCCCCACAAACCTCTTATATCATTGCATACTGTAGAcattaacatttacattttagtcatttaacagacgctcttatccagagcgacttaaagCCAATGTATGGTTCATTTGAGTATGTGGTTGGAGGCTCCATATAGAGGGTGTGACAcaattgacatgattggttgacagtaGGTGTAGGCGGGaagtcctgtataaacacaaactcacttcttTGACAatttccttcacaacagctctgcgctCGCCCCTGCAAAGCGCAAAAAAGTATGAATGCCCAGACTTCTGCAGACGCCGTATGAGCAGAAATGCTGCACGGCCAATGCAGAAGTCAGATTGACCATGCAGCACCTTTTACAGTCAGAAtcactttttttgttttattttttacctttatttaacctcttaAATGTAAAGTCCCCATATTTGGGGACGCTATTAGATTGTTTTATTCAATTCAGTCGGTTAATAGAATCAGTAGAAGCGTGTCTGCGGAAAGCTGAGTATCTTGGCTATTGATATGTGACTTAAAATCTTTGGTGTGATTTATTACCATATATGGGCATACAAATGTATAGGGGCAGGTCGAGCCGATGACCTAATTTCAAGATGGCTTCTACCTACATTCCGGTTAGCGTCTTGAAGCATAAGCAAAATAAACACGGAATAAAACGATACACACCGAAAGCCGGGACTCCATAGACCATGAGGATGTCTTATTTGTCTGCCTGTAACCTACCGTTATTGACCACTAGCACCGAgagtaaaaatatttattttacacaACGTTTTCACCGAACAGCAAACATCTTACAAGGCTCTATGACGTGACTGGAGTCCCTGTGGATCCTCCATTCCTCTGACAGTACCATGGCAGAGGAGAGCATTGATGACCCTGACAGACAGCCTCAGCCCACACCACCAATCACCACCACCGGTCCATGAACATGAACAACCAATTCTAAACCATACTGGGCATTATCCACAAAGCAAGGTCTCTTAAACACAGTCAACCATGGCCAATACTGGAGGGTTTGAGGGAACTTTGGGGAAGTCGAGAGCGAGGTCTCATCTTTGACTCTGGAGAAGTTTCCTTGTGCCCTGACTCCTGGCTCTACCCGTCTACGGCTCTGACCAACCAATGACCATCCGCTGTAGATAACCCACTGTCTGTCATTGGATCAACATGTCCCGTCTGCCTGCTCCTATTACTGTCCGTCTGCTTTGTAAATGAGCAGAATCCTCTAGTGCCAAGGAGGTCAGGTGTCCAGCAGCGCCTtgtccagagagggagagagtggtaactATGGAGCCATTTTGGATCGACTACTGTACTGTTCAGCTAATGTCTGCTAATTTTCAGTGGACAGAGGACTCCCACTACTTCAACCTCACCTGCTTCTGTTAGACTGTAATGGGACAGTTACGTGTCCCAAAGAACAAGGATTATTGTGAACCAGGCCCTCTGAAGTGTCTGACCTAGCGCCAGACTATGGACTGGACCAAACGTTGGACTGGATCTATCCAGACTATGGACCAGACTGGACCAGATCCTACTGCTTGCCTTGTGCTCTGCTGTGAATAGAACTTCTGCTGGAGTAGTACAACTTTGGCACTCTTCATATTTTTATAGACCAAAGAGGAAAAAATAACTTATAATAACAGATTGGGAAAGAGAAATGGATACTTGTTTTTCTTGCTACACCACAATGACTGCCCTCATAGCTGTAGATGTTGGGCTTTATGTCATTTCGAAAATAGACTATAGTCTAGTGGGACATGTATACAATCAAAGGAGTTtccttttaaaaacatttttttctctgACTAAACCCACCACTGTATTTTGAAACTGAAGATGTAGGTAAACATATGTgtataaaaaaatctgatttgCATTTTTCATTAGCTACAAATTGGGACACGTTGCAATAAGCATGGTTGGTAAAACGGTAAGAGTGAAACTACTGATCATCATTGAGGCAAAAAAGAGAATATTGAAACTGTCATTTCTGATTGCGGCTGTTGGGCGGGGGAAAGGCAAATTtcattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1981426 lncRNA upstream 195774 33658603 ~ 33658826 (+) True G1729923
TU1981366 lncRNA upstream 211388 33638251 ~ 33643212 (+) True G1729865
TU1981338 lncRNA upstream 244605 33609688 ~ 33609995 (+) True G1729837
TU1981301 lncRNA upstream 290470 33563862 ~ 33564130 (+) True G1729803
TU1981287 lncRNA upstream 301114 33553224 ~ 33553486 (+) True G1729789
TU1981823 lncRNA downstream 33670 33902647 ~ 33902885 (+) True G1730296
TU1981852 lncRNA downstream 55839 33924816 ~ 33925079 (+) True G1730325
TU1981883 lncRNA downstream 81515 33950492 ~ 33950910 (+) True G1730354
TU1981922 lncRNA downstream 110377 33979354 ~ 33979570 (+) True G1730393
TU1981933 lncRNA downstream 117596 33986573 ~ 33986790 (+) True G1730404
XM_036957699.1 mRNA upstream 44883 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 338612 33329927 ~ 33515988 (+) True LOC110500284
XM_021577574.2 mRNA upstream 601077 33180674 ~ 33253523 (+) False LOC110500282
XM_021577585.2 mRNA downstream 440122 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 440138 34309115 ~ 34317797 (+) False LOC110500288
XM_021577584.2 mRNA downstream 442018 34310995 ~ 34317797 (+) False LOC110500288
XM_021577588.2 mRNA downstream 456233 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 456233 34325210 ~ 34329578 (+) False LOC100135927
TU1980944 other upstream 532839 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1692208 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1717904 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1719601 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 2290006 31564135 ~ 31564594 (+) True G1727220
TU1983724 other downstream 1570312 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2172354 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2364145 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2888012 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 3379650 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile