RNA id: TU1982318


Basic Information

Item Value
RNA id TU1982318
length 3278
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC110501068
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34269811 ~ 34288000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggggtaaactcaaaacattttttttttagatgcatgccacaacacaacactaaacaatacattaattggactataatggtgacaaatggtgcccacacaCTGTTTGGGCCTACATTAagctgacaattgagatgtataaACTATTGCATCAGGGGACGACGAGCAGGTAAGAGGCAATTAATGAGCGAGGTAGGATGGACTTAGTCAATATAactttgttcagcacttttgaaatgtacagcaacagaattcagaacatgggccgttcttaaggtgttctccctgtacaccaagtcagataAATAAAGggagcatataagcagacaatgaaagctcttacaatatttgattatGACATTTTGTTAAACAGGCTATAAGctatgtgcaccaccaagtcagaacagtaggctaaaaggggaaaagggaccaaattattagtgAGGCAcctgggctactaacagcttactacacaacatacacatagtattactttcttagctacagtatacatatctccctgacatattacattatttatgcagcagcatacaatacattttggaCTCACTTTggtgtgctgtgctcacttgaacaggaaggtggtgtggccaatgaccttgatccttcttggatgggcacttctaatgtaactctacgGCAACACGCAAGGGGCTTGAATTtgagctctccctgtagattttgtgACAgtacactgagccaatcacggtgcaactagATAACATTACCAACCTCtatgctccgtattttctgctggctaccccaccaccacagaaagcactgagctaggctgacaCACCCGCATTTTGGAGCTgcattactcaagaaagcaaacaaGAGTCCGCTTGTATGCGGCCTTATTAACTCAATTTTACATATAGATTTtttcattgtttgcaaactgatatgggACCTGTATTAATGCCAGAATGACGGGTCATCACTGATTGCGATAGCCTGTACATCTTTTGATTACCAATGCACGGTTCAGACTCTGCCTGGTGGCCGACATGCCTGACTGTGCccattctctctcgctccctccctcgttAGCTCGCTCTTTCTTTGCTGTGATAGATTAGTTTTTGTTCTCAGAGGTAGCCACAGCAACTAGTTTCCTCCCTTGCAAAAATACTGAATCTTAGGAGTCGACGAGTTGATGCCTGACACCCAGAAATGTGAGTCGACACCGGGAATTGACAGGCAAGGAGTTGAGGAATTGATTCTAGTGTGCCTGTGAGAATCTGACTAGTAGAGGCTGACAACGACTCTTCCTCTTCCACAGTGGAAGCAAACTCACATTGAAAAACAATGTAAGTGTACAAGAAACAAGAAGATAAAGTCTCACTGTAGTAGTTAGACCAACTTTTATGCCTGTTCCCATTGCTTCTAATACAAACCTTTCAGCTCTTCACTCGCAGTGCACACAGCCCtccagccaggcagtgttgctTCGCGAGGTGAGATAGCTATAACGTTACGATTCCTATTTATTTGTGCATTGCCAAATATGAAACCAAAAGGAATAAGTACTTTAAACAGCTACAGCCCCATTTATTTTTCTATAAATCACTACTCGCACGTGCCAATACTTGACTTTGACCAATGTGGCTGGTGAATTAGAAATTTGTATGCGCCAATATCAAAATCTACCCGCATTTGGTGGGTGTTAATTTAAGGCCCTGCTTGCTACCCCCTTCATCAAATCTTGAGTGAGTGTTGTTCACACACTATCTGTTTGAAAGGTGTAACATCCTACAAGTTTTGTCTTTGCCTTTCATGGTAGAATAAATCCTAGGTCCATATCTTCTAAGTCCTCTAGATGGTGCCATTGTCAAATAAACAGATCTGATTTGACCTTAGTTTAAGAGGACTAAGTGGACGCACCTCTTTTCAACACAAGcaccagctgtgtgtgtttgagcatgtgtgtgtgtgtgtattcaagtATACTGTGCCATAACACTCCAGGCACCACTCCCTAGTAAACATGGTACACCTCTTCCACCACGTTAGATCGTTGACCCCCACATGCCCCGGGTGGGATGCCAGCACAACGGGGTGTCTATCCCCATGCCTCCCCTCGACGTCCTCCGGGTCGGAGAACGGATGCAGTTCAAGAACGAAGAAAAACTCTTCCTCGTCCTATTCTTCGACAACAAACGCAGCTGGCAATGGCTTCCTAAGTCTAAGATGGTCCCTCTGGGGATCGACAAGATCAAGATGATGGAGGGCAGAACATCCAGTATCCGTAAGGCTGTTCAGACTGCCTTCAAACGTGCCATGAACCATCTTAGCATCGTTCAGGACGAACCTGTCAGTGACATGAGCGACgtggactaacacacacacagacacacacacccaacccttGAATTACTGCTCATGGTCTTGTCTCAGACCTGAGCCTGGCCTACACTCCTTCCTTCTCCACTTTGTCAGTCTTTCCAAAGGTCTATGCTGGCTGTTTTTAACAGGTGCCTTGCTACCCCCCTGGCTTGGTATGGTTCCCCCTTCCACGTCAGTCCTCGCCCGCTGGTCTGACGACTGCTGCTTTAAAGAATGTGCCCCAGTTCCCCTCCTATCTACTGTTCTTCATGGTCGCGTTCATGatgcaccaaatggaagaaaacaactCGCTCATCTCGCCTTATCAGTGGTGGAAACAGTACCCAACTAtcattcttgagtaaaagtaaagacaatagaaaatgactcaagtaagtcacccagtaaaattctaccagagtaaaagtatttggtttaaaatatacttaagtatcaaattccttatattaagcgaaccagatggcaccattttttattttacggaaagccaagggcacactccaacattcagacataatttacaaatgaagcatgtgtgtttagtgagtcccacagatcagaggcagtagggatgttcggttgataagtgcgtgaatttcaCTATTTGCCTAAGAaatcaaaatgtaacgagtacttttgggtgtcaaggaaaatgtatggagtaaaaagtacattattttctttagcaatgtagtgaagtaaaagtagtcaaaaatataaatagtaaagtacagatacccaaaaaaacgacttaagtaaaaatacttgaacgTACTAATTAATTGCTTTAATCCACTGCACCTTATGCCATTTATTTCCACTCAAAACTACCTACTACATTTATGTTAACTCTGTAAATAACTGCAATATTTGTCTGACACACTAACTTATTTTGTAGATTGAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1982359 lncRNA downstream 37809 34231775 ~ 34232002 (-) True G1730801
TU1982179 lncRNA downstream 110517 34159045 ~ 34159294 (-) True G1730635
TU1982146 lncRNA downstream 135735 34133767 ~ 34134076 (-) True G1730602
TU1982116 lncRNA downstream 156358 34113175 ~ 34113453 (-) True G1730573
TU1981970 lncRNA downstream 256318 34013217 ~ 34013493 (-) True G1730441
TU1982399 lncRNA upstream 82693 34356045 ~ 34356437 (-) True G1730840
TU1982402 lncRNA upstream 87623 34360975 ~ 34361234 (-) True G1730843
TU1982741 lncRNA upstream 281356 34554708 ~ 34555814 (-) True G1731157
TU1982736 lncRNA upstream 282519 34555871 ~ 34563479 (-) False G1731156
TU1982732 lncRNA upstream 283828 34557180 ~ 34565175 (-) False G1731156
XR_005038435.1 mRNA downstream 965445 33300216 ~ 33304366 (-) True LOC118942783
XM_021577573.2 mRNA downstream 1229003 33037901 ~ 33040808 (-) True LOC110500280
XR_005038581.1 mRNA downstream 1427866 32834421 ~ 32841945 (-) True LOC118942920
XM_021577562.2 mRNA downstream 1501972 32755608 ~ 32767839 (-) False LOC110500274
XM_021577563.2 mRNA downstream 1501972 32756127 ~ 32767839 (-) False LOC110500274
LOC118936404 mRNA upstream 14724 34288076 ~ 34292270 (-) True LOC118936404
XM_021577583.2 mRNA upstream 18714 34292066 ~ 34295197 (-) True LOC110500287
XM_021577586.2 mRNA upstream 44920 34318272 ~ 34325044 (-) True LOC110500289
XM_021577589.2 mRNA upstream 98878 34372230 ~ 34376541 (-) False LOC110500290
XR_005038447.1 mRNA upstream 332010 34605362 ~ 34646912 (-) True LOC110501069
TU1980333 other downstream 1665181 32603463 ~ 32604630 (-) True LOC110500269
TU1980113 other downstream 2000150 32254847 ~ 32269661 (-) True LOC110500257
TU1980083 other downstream 2100877 32167669 ~ 32168934 (-) True G1728665
TU1978738 other downstream 2670322 31599146 ~ 31599489 (-) True G1727426
TU1978665 other downstream 2777509 31491520 ~ 31492302 (-) True G1727354
TU1982316 other upstream 51873 34325225 ~ 34329576 (-) True G1730761
TU1982420 other upstream 98925 34372277 ~ 34374679 (-) True LOC110500290
TU1982739 other upstream 283828 34557180 ~ 34564656 (-) False G1731156
TU1982734 other upstream 287817 34561169 ~ 34565175 (-) True G1731156
TU1982952 other upstream 500114 34773466 ~ 34773878 (-) True G1731328

Expression Profile

TU1982318 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU1982318 Expression in each Bioproject

Bar chart with 21 bars.
TU1982318 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011098 True 1583 lncRNA 0.38 2 NC_007123.7 8388330 ~ 8394645 (-)