RNA id: XM_021577585.2


Basic Information

Item Value
RNA id XM_021577585.2
length 5143
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110500288
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34309099 ~ 34317797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtttatgggatattgtttatgtttagttgcctgttagcactgCATTATCGTCACGGTTAGTTTATTCTTTATTTGTTTCGTCTTTGCTTAAGTTTCACTTTATTAAtaaaaattatgtggaactcaaagtacgctgcgccttggttggATCATTCTTATAAACAACGTGACACAGTGATTGTGTCTGTTGAACCGGTACATTTGTGGTAAACTTGGAACTCTGGGGGaaaaacgaggtcaaatcatgacatcagtgattttCACGACATACCCTTCCTATCCTGCATTGAGCCGACTAGAAAAGGTGGAAACGTCTCTTGACACTTTCGTAAATAGAGAAAATGGACTACAAGCTTGCTCCTTCTGATCTGGACAAGACTGAAACTTTGGCGTGAGAAATGCTCACACACTCATGAACTTTTGGCAAGCTGTATTCGATAAGAAATTGATTTTCCCCCAGAACTTTGGTCGGCTAACATGGATGGAGAGGAAGACCTCTCTCTTAAGAGTGAAGATGTAGTAGACTCAGAAACTAATGGCATAGAAAACAAGAAAAGAGAGGCAAAAGGAACATGTCTAAAAATTGAGGGGCAAGATGGCTACGTGTTTAAATCATACAGCATCACCCCCCATGACACTGCAGACGCAAAAACCTTTTGTCCGTCTAAAACACTGGCTAAAGACTCTTCACCCGTGGCTTCTATTCACGAGGAGGAACCAGACAATTTTTCTATTTCTCAGGTTGATGGACAATTAACAATTAATGAGTCTGTCAATGAAGCAGATGAGGTATGTGATAAAGAGGACTCTCTTGGGCCTACTTCTCCAGCCATTTCAAATAAAATCCTAAATCTTAACACTGCGGTCAAGATAGAAAATGGCACATCTGAACataatgaggaagaggaggatccaaACAGTATGAAGGAGACCCAAGAGGATGAAAGGTTATCGTATGATAGTTCTGTAGGCCCCTTTGTTACTAGAGACGATACAGATGACAATACAGATGATTACAGTAGTATGCTTAGTGGGTACACAAGCACTCTTTATGATGTTGCGATGGATGCTGTCACTCAAAGCCTATTGTCATCCATGAGAAGTCCCACTAATGCTAATCCCAGGAAGAAATCCCCTGCCTGGAACCATTTCTGCATATCTCCACGCGATAGTACCAAAGCAATCTGTATGTACTGCATGAAAGAGTTCAGTCGAGGTAAGAACGAGAAGGACCTAAGTACAAGTTGTTTAATGAGGCACGTACGAAGGGCTCATCCCACTGTGCTTTTACAAGATGGTGACCTCTCCTCAAATACTCTGACTGCCTCAGTTGCCTCATCTGTAATACCCCCCTCAAATTCATCAAATAACGGAAGCCTGGCAGCTAGCATTACTACTCCTGCCTCACAAACAAACTCTTCACCGTCCACCTCTTCAGCAGAGGGCTCTGACATATCATCCAAAGAAAAAGAAGTGTTACCAAAACTTGAAAAGGGTGCCAAAAACGACACTGGCACAGTCTCATCCTCACATTCCAACAACAACCATGAAGAAGCGATGGATGGAGGTGGGTGTGAGAGCCTCGCTGCAACTCCCAAAAACTCAAGTTCTCGTAGAAGATCAGCTGTGTGGAAGCATTTCTACCTGTCCCCTGCTGACAGTTCCAAAGCAGTATGCATACACTGCATGAATGAATTTAGCAGGGGTAAAAATGGAAAAGACCTGGGCACAAGCTGTCTGATTCGCCATATGTGGAGAGCCCACAGAGGAATTGTCATTGAAGAAAATGGACAGGGCTCGAACATCCCACCACCATATACAAACCCAACAACACTATTGTCTCGCTCTCAGCTGCATCAGGACTCTGTAGTGGAGATTAAAAAAGAATCCCCTTTCGCTCCATCCTCCCCAGAAACAATATCTGACGAAATGCCCCATAACGAAGATGAAAGCATGGACGTGAAGGAGGAGTCTGACACAATAAACCAATCAGAACAGGATTCCTCCCTCAATCTCTGCTTTGGACTTAGAGATGAGGATGTTCCTTTACCTCCCTCAATGTGTGATCTGTCTCTAGAGGGCTCAGGCCTGAAAGAGGATCTGGCGAGTTCAATTTtccaacaaaataaaaaaatcatgaAACGTGTGAAATCTGAAGTGTGGCACCATTTCATCGTCTCTCCAGTGGATCAGCTTAAAGCCCTCTGCCGATACTGTCCCTGTGTCATCAGCCGGGGTAAACGGGGAGACTTCGGAACCAGCTGTTTGATGAGGCATCTAATGAGAAGGCACCCAGATGTCCTCAAAAACCAAAAAAGCACAAATGATAAGGACTCCTCACCTCATCCCTATGCTACTCTCTCTGCTGCTGAGGCTGTTCCAGCCAAACTGACTAACAGCCCTGCCAAAGAGAAAAAGCCACATAACTCTGTGTTCAGTAAAAAGACATCAAAGTTGTGGAATCATTTTTCTATTTCCCCTTCTGATCCCACTAAGGTGGTTTGTTTGCACTGTAGCCGCACAATAAGTCGGGGCAAAAAGACGACAAACCTCGGAACTAGTTGTTTATTCAGGCACATGCAGAGATTTCATGGAAATGTTCTTGAAAGTAACAGTACTATCTCAGGTGATGTGCCGTCTGCTGAAATTCACGTTAAACACGAACTCATGGACACTTCTTCTGTGTATGATGAAAACTGTGAAAGATTTGATGAATACCACCCGGTTGCCAAAATAATCACCAAACTCGTTGCCGAAATGCTTGCACTGGATCTTCAGCCATCAGCCTTAGTAGAGAACACTGGTTTGAATCGATTACTGGAGTATCTTCAACCCCAGTattctctaccctcctcttcgtATTTCACCAGCACTGCCATACCAGACATGtatgagagggtgaaggaggTTGTTCTCACACACCTGAAAGAGGCTGAGAGTGGTATTGTCCATTTTACAACAAGCATCTGGGTCACTAGCCAGACTCGGGAATTTCTGACTCTTACTGCCCACTGGGTTTCATACGAATCATGTGTTAGACCTCAGGGCGAGGACTTTCACTGCTCCGCTCTCCTCAGTGTGTCACAGATAGACTGTGACCATGACACGCTCAATATACAGAAGCAGCTTGAATACTTCTGGGACACCTGGATCAGCTCCTTAGGGTTGAAGAAAGGATTCACTGTAACCGACAACAATGCTATTGCGAACGTCCTGGAGGACAACAACCATGTCATCATGCAGTGCTTTGGCCACACAATAGATCTAATTGTGAACGAAGCCATAAAGAGTCAGAGGATGGTCCAGAACCTTCTAAGCAACGCTCGGAAGATTTGCGAGCGTGTGTATCGCTCAGACAAAGCAAAGGAGAAGTTGGCAGAATTGCAGAAGGTTTACCAGCTACCTGAAAATTGCCTCATCCAGGACGTTCCCTCAAAATGGAGGACATCCTTCTTCATGCTTGAACGTCTGGTGGAACAAAAGAAAGCGGTCGACGAGATGTCAATAGAGTGCAACTTCAGGGAAATGATCAGTTGCGACCAGTGGGAAGTGATGCAGTCGGTATGCAATGCGTTGAAGCCCTTCGAAGTGGCCTGCAGGGAGATGAGCAATCGCACTGCCACTTTGGGTCAAGTCATACCACTGATCCACATCCTCAACCGGAAGATAGACATGCTCTTTGACGAGACAATGGGCATCGACAACATGCTCAAGTCTCTGAAGGAAGCGATGGTGAGCAGGATGTCGTCGACCCTACACGACCCCAGGTACACTTGGGCGACAATGCTGGACCCGCGTTACAAGACTTCCTTGTTCACAGAGGAAGAAGCGGAGCAATGCAAACAAGATCTCATCAGTGAACTTCAGGTGTCCCTTTCTACCTCAATTGAGATAAAGCCTTCACTATCCAACGGATGTGGTGGAGAGGTCCCAGTTTCATCAAGCAGTTCTCCCTCAAACAAGGACAACCTCTGGGCACTCATGGATGACATCAGACACAAGATAAAACAGGAGGACAAGCCAAAATCATCAGAGCTGGCAGTGCTGGAATACTTGGAGGAGGACATACTTGATCAAAGCTGTGATCCACTGGACTACTGGAACCTGAAGAAGTTACTGTGGCCTGACCTTGCCAAGGTCGCTGTCCGCTATGTGGGCTGCCctcccagcattgtcccagcagAGATTCTGTTCAGCACAGCCAGTGTGAACTGCGCTCTGAATCAGCCCATGCCATTACTAGAAAACATGGAGGGGCTTCTCTTTCTAAAGGTCAACCTACCCTTAATTTATTATCAGCACTGATTTATAACCATTGCTTATGAGGCTCCTTAGCAAGGTCCAATTCATAGAACTGTGAAATGACAGGGGTAACTTTTTAGATTCAGGGGTAACTAAAAGGAGAATAGACAATACACTGAGCTTCATTTTCAAATCATGAGCGCATTTGGAATTGTTAATTAAGTTATTCTTAATTGCATTTTGTGTACTACTGTCAACACTTTAGAACTTGCATCAGTCAGAGACTCAGTGAAAAgtgtcagggagggaggggtgcaTTTAGCGGTAGGGGTTGTGAACATTTGTTCCTGTGTCTTAATTTTGTCTTCTCTCTCCTTGTGCCTTATCCAAAACTAATTCAGGTCAAAATGCTGTAAATACTTTGATGCGCAAATCAAGTCTTTCAATTTAAATGGCTTAATATTAGAAACAAGATGCTGTTTTTTTTTCTAAATGAATACATTGCCCAAAAATAAATGCTGTGACTGAAAGATGTTAAGTTTGTTATTTATTTCATTATGAATGTGGCTCATGGTACTGTCAATTTAGAAgttgcttttttttttacttgctGAAATATTTTAATATTATGCAAGATTGCTGTATTTTTTTCAGAAGCAATTTGTTTGATATGTCTTTAGcacaattacatttattttcaaGGGATTAAATTATGGGTTGTCAAGtaaaatgtactgtacatttatAATGATTGTTGAACTTAATTTCAAATGTGGAAGCATTCAGACTGGAACCATGCAAATTGTGGTCATTTGTAAATAAAAGGTTTCTTATGTAATCCTTTGTtcctgtattttttatttttttttatgctTTGTGTACAGAAATTGCCATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1982290 lncRNA upstream 2890 34305368 ~ 34306209 (+) True G1730741
TU1982291 lncRNA upstream 6586 34301668 ~ 34302513 (+) True G1730742
TU1982293 lncRNA upstream 11397 34297169 ~ 34297702 (+) True G1730744
TU1982196 lncRNA upstream 90375 34169294 ~ 34218724 (+) True G1730651
TU1982125 lncRNA upstream 189723 34118996 ~ 34119376 (+) True G1730581
TU1982424 lncRNA downstream 61791 34379588 ~ 34379848 (+) True G1730861
TU1982429 lncRNA downstream 64396 34382193 ~ 34382447 (+) True G1730866
TU1982520 lncRNA downstream 187445 34505242 ~ 34558860 (+) True G1730956
TU1982558 lncRNA downstream 257451 34575248 ~ 34580030 (+) True G1730994
TU1982564 lncRNA downstream 265410 34583207 ~ 34583466 (+) True G1730999
XM_021577581.2 mRNA upstream 440083 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA upstream 440083 33749559 ~ 33869016 (+) False LOC110500285
XM_036957699.1 mRNA upstream 499382 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 793111 33329927 ~ 33515988 (+) True LOC110500284
XM_021577574.2 mRNA upstream 1055576 33180674 ~ 33253523 (+) False LOC110500282
XM_021577588.2 mRNA downstream 7413 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 7413 34325210 ~ 34329578 (+) False LOC100135927
XM_036957702.1 mRNA downstream 7413 34325210 ~ 34329578 (+) False LOC100135927
XR_005038582.1 mRNA downstream 7413 34325210 ~ 34329578 (+) False LOC100135927
XR_005038583.1 mRNA downstream 7413 34325210 ~ 34329578 (+) False LOC100135927
TU1981477 other upstream 440122 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 987338 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2146707 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2172403 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2174100 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1121492 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1723534 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1915325 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2439192 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2930830 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile