RNA id: XR_005038582.1


Basic Information

Item Value
RNA id XR_005038582.1
length 1501
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC100135927
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34325210 ~ 34329578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTCTTCCTGCATGTAAATATTACTTTCGTACGCTTTGGGTAGCTAATTTCCAATACATTGTTGTATATGTGTATAGACTCTGTGCTACACGTTTTAGGGATAGGAAGCTTGCTGGCAAGTGTCTAGTGTGTAACATTAACTATGATATGAAACTTCGAGTCATTCAACTGCTTTCCAGTTACTGTTGTTACCCAGAATGCTATCGTTCAATCAATTATTGTGGCTATTTTGTAGCCTAGCTTTTATTTTACTATCACAATGCACCTATGCAAAATACTTAAAAAGCTCATGTAATACCTGCAAACAGATAGCTGATAACTTCAGTAAGGGATTGGACCGAACGAAAAAGCAGAACTTTGGTGGAGGAAACACCGCTTGGGAGGAGAGGGCACTTTCCAAATATGAGACAAGtgAGATCCGCCTAGTTGAGATTCTGGAGAATCTGTGTGACAGCAGCAGCTTTGACTGTAACCACATGGTAGAGGAGCATGAGGACCACTTTGAGACCTGGTGGTTCAAGAGGCAAAATAAGCATCCTGATCTGTATAAGTGGTTTTGCGTTGATACCATCAAGGTGTGCTGTTCGACGGGAACGTTTGGCCCTGATTGTAATGCCTGTATGGGGGGTTCTGAGAGGCCTTGCCATGGCAATGGCGTGTGTGACGGTGATGGAACACGAGGGGGTAACGGCAGGTGCAACTGTGACCATGGTTACAAGGGGGAGTTCTGTCTGGACTGCATGGACGGATACTTCAATGAAATTAGGAACGACACGTTTTCACTATGCACAGAGTGCCACACCTCCTGCAAGACCTGCACTGGTATGACCAATGAGGACTGTGAGAAGTGCAAGACTGGCTGGGGGGAGGATGATGAGAGGACCTGTCTTGATGTGAACGAGTGCTTGAACGACCCTCCTCTCTGCAAAGAGGATCAGTACTGTCTGAACACGGATGGCTCGTTCTCCTGTAAAGGCTGTGACGAGTTGTGTTCAGGCTGTACTGGGGCAGGGCCTGATAAGTGCCAGAGCTGTGCTCCTGGCTACCAGGACACAGAGGGCACCTGCACAGATGTGAACGAGTGTGAGCAGACTGATGCTGTGTGTACTGCGGAGAACCAGGAGTGTTTGAACAACAAAGGAAGCTACATCTGTATCTGTGCCAGCAGGTACGAGGAACAGGAGGGAGTCTGTGTCAAAATACCAGAGCCAGAGGAGAATGAGGCAGAAATAGTGACACGTCCAGAAGAGCACGAAGACCTTTGACCTCAGGAAATGAACTAATAGGAACAAACCAGGAAGAGCATTTGGAGTAAATTGGGAGATTTATACCTGTCGCTCATGGATGGACAGCCAACAGAATGGCTGAGAAAATTAAAGATTCAACCCCCAAGTACTCTGGTTCTTGTTTTTGCTGTGATTAACCCAAGTGTTGTCTGGTTTTTAAATTCATGCAGGATTTTGAACGTTATTCAAATAAagtttgagaacagaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1982295 lncRNA upstream 14695 34310139 ~ 34310515 (+) True G1730746
TU1982279 lncRNA upstream 15249 34309585 ~ 34309961 (+) True LOC110500288
TU1982290 lncRNA upstream 19001 34305368 ~ 34306209 (+) True G1730741
TU1982291 lncRNA upstream 22697 34301668 ~ 34302513 (+) True G1730742
TU1982293 lncRNA upstream 27508 34297169 ~ 34297702 (+) True G1730744
TU1982424 lncRNA downstream 50010 34379588 ~ 34379848 (+) True G1730861
TU1982429 lncRNA downstream 52615 34382193 ~ 34382447 (+) True G1730866
TU1982520 lncRNA downstream 175664 34505242 ~ 34558860 (+) True G1730956
TU1982558 lncRNA downstream 245670 34575248 ~ 34580030 (+) True G1730994
TU1982564 lncRNA downstream 253629 34583207 ~ 34583466 (+) True G1730999
XM_021577585.2 mRNA upstream 7413 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA upstream 7413 34309115 ~ 34317797 (+) False LOC110500288
XM_021577584.2 mRNA upstream 7413 34310995 ~ 34317797 (+) False LOC110500288
XM_021577581.2 mRNA upstream 456194 33709496 ~ 33869016 (+) False LOC110500285
XM_021577597.2 mRNA downstream 437142 34766720 ~ 34782583 (+) True LOC110500293
XR_005038436.1 mRNA downstream 454835 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 588114 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 699681 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 741792 35071370 ~ 35267800 (+) True LOC110500296
TU1981477 other upstream 456233 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1003449 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2162818 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2188514 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2190211 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1109711 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1711753 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1903544 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2427411 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2919049 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile