RNA id: XM_021577600.2


Basic Information

Item Value
RNA id XM_021577600.2
length 4609
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110500296
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35071370 ~ 35267800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTCCATGCACGAGTCCGTGCTGCGCCTGATGCAGTGGCTTGTGGATTCGATCTCTCTCAGGTTACGGAGGAGTTAGAGAAAGACCAGTTTAATGGAATATTTTCAGTAAACGCAAGAAAGCGAAAACTAGGTACAAGATTCACTTCATTTACAGAGATTGTATGTAGCCGAATATAACTCTTGGAGCCGTGGAATAGCTGCGACAGAGACAGGGTTTGTGGCATTCATTGAAAAAACAGACCTTTAGTATGCAATGCAGCCATGACAGGCAAGAGTAAGACAGCTGTGAGGACGCTGGAGGATTTAACGCTCGATTCCGGTTATGGTGGAGCCGCTGACTCCTTCAGGTCTTCCAGTGTGTCGCTGTGTTGTTCGGACACGAATCTGTCATATGCGCATGGGGGAAACTGCTGGCATCTGACTGAATCTATGCACAGCCGACACAACAGCTTGGACACGGTCAACACCGTCCTGGCGGAGGACACGGATATATTGGAGTTCTCCAGCCAATGCGCCAAGCTTCCCGAGCTGGAGGACGTGCCATGGAGCCTCAGCGAGGTGGAGTGTGCACTCAGGAAGAAAGAGGAGCTATGTGTCGGGAGCCCGTCACAAGAGGTCCTGGCCAAGCTCTCAGCACTGGTCAGTCGGGCGTTGGTGAGGGTCGCCCGGGAGGCTCAGCGCCTCAGTCTGCGCTATGCCAAGTGCACCAAGCACGAGATCCAAAGCGCCATCAAGATGGTTCTCTCCTGGACCATCTCTGTCAACTGCATCACCGCAGCACTCGGTGCACTTTCGCTCTATAATATGAGCACTAGGGATAAATTATACCGGGGCAAGTCAGCGCGGTGCGGGCTCGTCTTTTCTGTAGGACATTTTTTCAAGTGGATGGTTGAGAATCGAGTGGCACTCCGGGTCCATGAGCACGCGGCTATATACTTCACTGCCTGTGTGGAAAGCCTGTTCCTTGAGGTATTCAGCCGAGTGCAGCGGAGCGCGCTCATCGAGAATGACAACGGTACCTCCACATTTACGCTTGAGTCCCTAGAGCAGGCCATCAACAATGACTCAGAGATCTGGGGTCTGCTGCAGCCCAACCAGCACCTCATATGTGGGAAGAATGCAACTGGTGTGCTGAGCTTGCCGGACAATCTGACCCTGCACCGGAACCAGCAGGGCTCTGGGAAGGGTGGCAAGGGCAATGCCAACAATCAGGCTGAACTCCGCAACCTGGAACAGTCCCTACTAGCTACCCGTGTGGGAAGCATTGCAGAGCTCAGTGATTTGGTGTCACGGGCCATGCACCATCTCCAGCCATTGCGCATTAAGAACCCTAGCAACGGCATGCCAGTTCACCAGAAGAGCGGCACGGTGCACTGGGAGCCTGAGGCACTCTACACTCTCTGCTACTTCATGCAATGTCCCCAGATAGAGTGGGATAACCCCAACTTGGAGCCCTCCAAAGTCACCCTGCAGATCGAGAGGCCCTTCCTTTTACTGCCACCGCTGATGGAGTGGATTCGGGTGGCAGTggcacacacagaacacaggcGCAGCTTCTCTGTGGACAGCGATGACGTGAGACAAGCTGCCAGGTTGCTCCTGCCAGGGGTGGACTGTGAGCCACGGCAGCTAAAGGCAGACGATTGCATCTTTGCCAACCGGAAGCTTGATGCGGCGTCCACAGAGGCTAAGTTTCTGCAGGACCTGGGTTTCCGCATGCTCAACTGTGGCCGGACAGACCTCGTGAAACAGGCGGCCAACCTACTGGGGCCTGATGGTATCAACAGCATGAGCGAGCAGGGGATGACACCACTCATGTATGCCTGTGTGCGGGGAGACGAGGCCATGGTTAAGATGCTGCTGGACACTGGGGCCGACATCAACAGTGAGTTGCTCCTGGATAGTCGAGACAGCATGGAGGGGGCCCTGCCAGATGGAGCAGATAACTACACTGAGACCCCACTTCAGCTGGCCTCTGCTGCAGGGAACtttgagctggtcagtctatTGTTGGAGAGAGGGGCAGATCCCATGACTGGGACCATGATCAGAAATGGCATCTCATCTGCCCAACTGGGGGACATGAACTCATATAGCCTGGCAGCATCACATGggcacagAAATGTATTCCGGAAGCTTCTGTCTcatggagagaaagaaaaggatgACTTCCTCTCCCTGGAGGAGATCCTGGCCAAGAGCTCGGTGCCCGGGGAGAAGAAACCTCCCCAGGCCGTCGGGACCCTCCAACGAACAGGAAAGGCCAAACTGAGGGCCCTGAGAGAGGCCATGTACCATAGCACTGAGCACGGCCATGTGGACATCACCATAGACATCCGCAGTTTAGGTGTCCCCTGGACCCTGCACACTTGGCTGGAGTCTCTGCGCACCTGTTTCCTGCAGCACCGGCGCCCACTGATCCAGGGTCTGCTCAAGGACTTCAGCTGCATCCAGGAGGAAGAGTACACTGCGGAGCTCATCACCCATGGCCTGCCACTTATGTTCCAGATCCTCCATGCCAGCAAGAATGAGGTGATCAGCCAGCTGTCTGTGATTTTCTCCCAGTGCTATGGGCCCTTCCCTATCCCCAAACTCACTGAGATCAGGAGGAAGCAGACCTCGAGACTTGACCCCCACTTCCTCAACAACAAGGAGATGTCTGATGTAACATTTCTGGTGGAAGAAAAACCCTTCTATGCACATAAAGTCCTGTTATTTACTGCTTCAGCCAGGTTTAAATCCCTGCTCCAAAACAGACCAGCAGCAGAGAACACCTACATTGAGATCAGTCATGTCAAGTACAACATATTCCAGTTGGTCATGCAGTACCTGTATTGTGGAGGCACTGAGTCCTTGCACATCATGAATACTGAGATTATGGAGCTTCTGTCTGCAGCAAAATTCTTTCAACTAGAGGCCCTTCAACGACACTGTGAGATTATCTGCTCCAAGAACATTGCCGTGGAAACCTGTGTAGACATCTACAAACACGCTAAGTTCCTCTGTGCCAATGAGCTGGCGGTCTTCATCGAAGGCTACTTCCTGAAGAACATGGTGCTGCTGATTGAGGTGGAGGCTTTCAAACAACTACTGTACGAGATGCCTGTTACTGTGAGCCCCGGACCCTGCCTGAGCCCCATCTCCGATGTCCTCCATGACCTGGAGAAAACTCTAGCCACCCGCATCCAGTCaattcacctctcctcctccaagGGCTCCATTGTGTGACCTCTCTGGGTTATTTAAACACACTTACAATCACCCAGTAATGTTACTGCAACATCCACTACCCCAGTTCATTCACCTGTCCCCTGATGTTAACATTTTCATAACATCCCTTTAATGTTACTGCTATTTCAAACCCTGTCCATCTACCTGTCCACGCTAGGGAGTGCTGTTGGTTTATGTGACAGGTCTGGGTGCTTACGCTTCACAACATTGCTGCAGAGTTACACTGCAGCGTCCAGCCATCTGACAGCTCCATTGTCTTCTCTTTGTTACAGGTTTGAACATTGTTGTAATACTCCTCTAACGTCACTGCACCATCGAATACATAAaggaaatataaaaaaaaaaatgtatgacttGTTACAGGCATATAATATGCCCATGATAATAAAATTTACAATTGTATTTCATATGAGATGCATACGTAGAATAGGTCCCTTTTGCTGAAAGAGTGGAATAACTTGTAGAATAAAAACTCTACTTTGAAAAATGAACTCATTCAGTGGTTAGTATCTGGTATGAGAGTTTACTTGGCTTTGTAATATTTTTGTTTGTATAATTGGGATGCAAATCTGTTTGGTGACAGAGCAGGTGACTAAAGTAAAGGAAAAAATGTCAAACTTTAACTTTAACTAAACCAACCACAAAAAGTTCACTGTAAAAAAAATCTGGTTGTTTTTATGGTAACTTAGTGGCAGCCAgttactgtaaaaaaaagacacagtatgttactgtaaatTCCAAAGAAACTTTGGTTTAACAGTATATTACTTTACATTTCAATAATGTACTGTTAAATCaaagttttttttacattaacGGAAAGTTACCATAAGTTGTTTTTAAGTTACAATAAAAacaacattatttttttaaagtgtatTCTTTGGAAGTGCATTGTAGCAATGATTTCAGAGTGATTTGAGAATGTAAACACATATGCCAACTCATTATCTTCATGTGTGGGACAGCATCTCACTCAGTCGTCGATAAAGCTGATGGAACATTTACAGAACTGACTAATACTTCAGTGCTCCTTGAACTGTACTCCCAACAATCATTATCCATTTATGCTTGAAACATGGATGTTCAACTTAGACCAAACTTATGATATATTTATAAACCATGTCAATAATTTGCATGACACCTCTCAACTGTACTACCCTACTGTTGCATTTCAGCAGAGCCAACCTCATAGACTACTTTGGAGGGAAGTGAAGAGTTTTCTAGCTATGACGAGTCAGACTCATACTGGCACTCTCGAGAAGGAAGGGTCTTCATGCTGTAATTGTGGGAAACAAGGTAAATATGTAATGAAAGTCAATTCTGTTGGTTGTTCTTTCTACAaactaatgtacagtatatttaatTCACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1983247 lncRNA upstream 82369 34988751 ~ 34989001 (+) True G1731605
TU1983243 lncRNA upstream 87320 34983849 ~ 34984050 (+) True G1731601
TU1983185 lncRNA upstream 104648 34966492 ~ 34966722 (+) True G1731545
TU1982999 lncRNA upstream 251111 34819994 ~ 34820259 (+) True G1731373
TU1982979 lncRNA upstream 271424 34799576 ~ 34799946 (+) True G1731353
TU1983241 lncRNA downstream 3257 35271057 ~ 35271595 (+) True G1731599
TU1983402 lncRNA downstream 5408 35273208 ~ 35273445 (+) True G1731754
TU1983403 lncRNA downstream 5825 35273625 ~ 35273884 (+) True G1731755
TU1983405 lncRNA downstream 10038 35277838 ~ 35278261 (+) True G1731757
TU1983396 lncRNA downstream 21051 35288851 ~ 35289535 (+) True G1731748
XM_021577598.2 mRNA upstream 37954 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 140199 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 278806 34784413 ~ 34792564 (+) True LOC118942784
XM_021577597.2 mRNA upstream 288787 34766720 ~ 34782583 (+) True LOC110500293
XR_005038583.1 mRNA upstream 741792 34325210 ~ 34329578 (+) False LOC100135927
NM_001165066.2 mRNA downstream 235891 35503691 ~ 35510121 (+) False sh2d1ab
XR_005038438.1 mRNA downstream 368787 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 520691 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 520692 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 520692 35788492 ~ 35982905 (+) True LOC110500322
TU1981477 other upstream 1202393 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1749609 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2908978 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2934674 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2936371 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 171489 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 773531 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 965322 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1489189 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1980827 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile