RNA id: XM_021577626.2


Basic Information

Item Value
RNA id XM_021577626.2
length 6628
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC110500322
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35788491 ~ 35982905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATGGTATCATTTGACGGTTTACACTGTACGTAGTCTACCAGACAAATGGTTTGTCCGTCTGATATTGTAGGCTATAGCCTCCGTATTCACGTGGTTAGACCGACCCTACATTGGGTTACAGTCTCTTCTCTTACATTAGCAAGGTACTTTCGGATTTCTCTGTGATATGGGAGGGATGATGCTGAGGTGAGCGCAGCTTGCAACCAGTTTGTCAGAGCTCCGCATCAATCGTCGGATAGGATAGTAACATCACATTTGCTCAATGAGAGCATAAGGACACGAGAGAGGATACTGAATTTCGACCTGGTGCGATAACATTCCGTTCTATGTACCTCTATATAAGAGGCTAATATGAAGACATCAATGGTCAAGCCAGACCCTGGAAAGCATCTGGAATCCTCCCATGTTGTTTGAAGCCTAAGGCAGGACCATGCATTGTGTCTGGTGAAAACCAGTCCACTCTCCTTCTACCAAACCATTGAgagtgaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacagagatgGGTTTGGACCAGCCCTGCTTGGATATGGTGGTGCAAAGGCCTTTTCTGGGTGCAACATGTAATAGGCACCGCCACCAGAACCTGCGCAGAAAGATGAGGCCCATACGAATCCTGGGTTTTGTATTCAGCATGGTAGCCATAAGCGCGATCTCATTTTCCTTCAGTGCCTTGACCTGGAGCTCAGGGACCTACTCAGAGCCGCTCCTGCCCCAGGAGGCCATCCTTCAGTCAGGCCCAACTCCACACAGGACTCTACTTTCCACACAGCACCAGAGGGACCCCAATATCTCAGCCGACATTCCCGTGGCAATGAGGTCTTCGGCAGACGGCAACGAGAGCCAGGGGGACTACCCCACGGACCTGTTCACGCTGGAGGAGAGGCGCCAGGGTGCTGTGGTGCTTCACATGTTTGGGATGCTGTACATGTTCATCTCTTTAGCCATTGTGTGTGATGAGTTCTTCGTGCCCGCTCTGACAGTCATCACAGAGAAGCTGGCCATCTCTGATGATGTGGCGGGGGCCACTTTCATGGCTGCAGGCGGGTCGGCGCCGGAGCTCTTCACTTCAATCATTGGTGTATTCGTCTCCCACAGCAATGTGGGCATCGGGACCATTGTGGGCTCAGCTGTCTTCAACATTCTCTTTGTCATTGGAATGTGCGCCATCTTCTCCAGGGAGATCCTCAATCTGACCTGGTGGCCCCTCTTCCGTGACGTCTCCTTCTACATCATGGACCTGATCATGCTCATCTGTTTCTTCCTGGATAACTACATCTCCTATTGGGAAAGTATTGTGCTACTTTCAGCCTATGCCACCTATGTGATCTTTATGAAGTTCAACAGCAACGTGGAGGGCTTCGTGAAAGGCTGCATGAACAAGAATCAAGTGGTGGAGGTGGAAGTGCAGCCCAAGGCTGTGAGTCCCGGGGCACCAGAGGATGAGAGCAAGCTGTCGGCTAGGCCCCGGCTTCAGAGAGGTGGTAGCTCAGCCTCCCTGCACAACAGCCTGATGAGAAACAGTATCTTCCAACTTATGATCCACACACTGGACCCTCTCAGTGAAGAATTTGCTGATTCTGGACAATTCAGAGAAAAGGCATCCATCCTTCATAAGATTGCCAAAAAGAAATGCCAAGTAGAGGACAGCGAGAAGGCTAATGGAGTAGCCAGCCGATCAGATAAAAATCTTCCAAACAGCTCAAATGTTGAGGTGGAAGTCACACCACCAATGAATGGCACTACAGGACAAGAAGGGGAAGCTCTGgctgaggatgaggaggaagaggaccagCCTCTGAGCCTGTCCTGGCCAGATACCATGCGCAAGCGTTTCACCTACCTCATCATCATGCCCATCGTCTTCCCTCTGTGGCTAACACTGCCTGATGTCAGGAAACCAACTGCAAAGAAGTTCTTTCCCATCTCATTTCTGGGTTCTATCTGTTGGATTGCTGGATTCTCCTACTTAATGGTGTGGTGGGCTCACCAGGTTGGAGAGACCATTGGGATTACAGAAGAGATTATGGGCTTGACTATATTAGCAGCTGGTACCTCCATCCCTGACCTAATCACCAGTGTCATTGTTGCACGGAAGGGGCTGGGGGATATGGCCGTGTCCAGCTCTGTGGGCTCCAACATCTTTGACATCACTGTTGGCCTGCCGTTCCCATGGCTCCTATGGTCCATTATCAACAACATGCGGCCTGTGGCGGTGAGCTCTAACGGGCTGTTCTGCGCCATTGTGCTGCTCTTTCTCATGCTCATCTTCGTCATCATCTCGATTGCTGCCTGCAAGTGGCGGATGAGCAAGCTGCTGGGCTTCATCATGTTCGTGCTCTACTTAGTTTTCCTGGTGGTCAGCGTTATGCTGGAAGACAAGATCATCGCCTGCCCTATATCCATCTGAGACCCCTCCACTCCTGCCACAAAATGTTCACTCCTTCTACAGGATACAAGAAGCATGGGGATGGGATAGAGGaaatacacaaaaaaatactTTCAGAATAAGGGCGCGTGATTAGGCTCGGCTGATTCACTGGACGGCTAGACCTGAGCGGAAGTAGatcatattaataataataataatcatcatcatcatcatcatcatcatcataatgataataataatagtaacaatacaaaataatattattattttggGGCGGGTGGTTGGGGGTTGTAGATGGCCGGGGATGTAGTTTTTTGGGATGGGGGGTGTATTAGCCAGGTAGAGGAGCAACTATGCCGTCTTATGCATGTCACTTGTTTTACTCAGTGGACTACTCAGTGGAATACTCAGTAGATTGAGGAGGCTGAAGGAAGTACACAAGAGACTTCTGACAAAGCTGTGGTGGCTGAGCCTGGCATGAAACACCAGAGGTGCAACAATAATGCTTTCTGCTTCAGGACAGATTGTGAGAAACCTTTTTGAATAAAACTTTGGATGACACTCTTTAGCTGGTTTCACTGACTGACCGGATGACTTCACTCGACTTGTCACTCCAGTGTTTGTTGTATAGTGAGTTTGATGATGATGAAGGGATGTTGCTGATACTCCACACAATGTGTGGATTCACACAAGACTAAAATATGGTTTGGAGCCATGATTATCTCCTCTCTTGTGTACTTAGTGACAGAGCATCAAAATACGAAGCAGTCCAAGCAGTTTTGAATGCAGAGCTGGAGATAGGAACTGATTTTGGCAAATGTATCTTTTGCTTTGTCCAAAAGACTAAAGTTCAAATATTCCATCTCCCCTTCTGGATGTCATTGCTCAACATGTCTGTTCAGAAGATTCATGTATTATTTTTGGATCGACACTATAGCTCTAATTACTAAAATAGTAGTAGCCCAGTTGTACTGTAGCAGTAACATGTACTCTAGGTGTTGGATCTTGCCTCTTCCTGGGTCCTGATAGGCCTACTTATGATCTTATCCACTTCTCCACCCGCCATTGGACATAAGAGTTCATATTGTACAGAGCTTGCCATGCTTCACACACCAATTGGAAATGTAAACTCTACTGGAAATGTTTAACTTGAAACCCAATTCAATCAATTGCAGATAAATGAAAAAACATAACATAATTGACTCAATGTTTAAGCTGGAATATAAGGACAGATGTGGTTGCACATCAATATACAAAGACTACAGATACGATTAAAAATTGAGATAAGCGAATGAAACTGATACTTTTGTATGAATAATTTTTTCTGATCTCAATTTGGAATAACGCCAAGAGATTGGGGTTGTGTCCATTTTCAAACATTTAACAACTCTGACACACAGGTGTAAAAATTCAGAGTAAAACCACAGGGTAGTTTTAAAAAAATCTGCACTTGATTATATTGGCCTTATCTGCAGCCTCTCAAAATATATATTAGCTTCCAATATTCTTCACTCTgaataaacaaagcatgtgtagACTCCGATAGGACACTCATAACCAATATGTAAAGTCAAAATACGGTAGTAGATAAGATAACTGGCACTTGATGTTTGAAATAGTCATAAAATGCTATACTTAGATTAGTGAATGTTTAGCACACTCTTGAAATTAAGACTTTAATATGCAGGCTCCTAGAGAAGTTTAGAGGAGCAGTAAAATGCATGACACATTTTCTTGTTATACCTGCCAGAATAATCACTACCCAAAAAATTATGAATTCTCAAATATTTAGCATTTCAATATTTCTTTGACGCAAGAGTGTTTGGCTTCTATGTACAAAACTACAACAATATGTATGGTTAATGTCTATCAACCTTGTGCAATTTATTTTCAATTGAAGGGTGCTTTTGTCTGCATGTGGGAAGTCTGTATACTCTGCCATGTAAAAATGGACATTTGATTAACAAAAAGTTATACAGTAATAACAAATGAATGGAGGTTACCAGTATTTTGCAGCAAATGGAAACTTATTATAGAAATCTATAATTATCTATATAGTCAGCAAATCtcatgcagtcattttcacagtCACCCATAAACTACAGTACATGGAACATTGACATCACAAAACTAAcagcaatatactgtatactgtatgtcagggttggggtcaattctgatttaaaaaaatgttttaaaggaGAGTGGAATTCCATTATCCATAAGTATCTTCTGAATCTTTATTTAGAAATTGAAGAATTAGATAGGGAACACAGGCAAGGAGGAGGGAAGTCAGCAAGGttaaggggggagggggggggggttaaatcaGTGACCGTCAGGATTGTACATGTGTGCTTTCTGCTTTCTGCGAGTATTACCATTGGACCACACAGTCCAATTCAATTCCAGAATTGTATTGGCCACACCCCACAGGAAGAAgaatttgaattgaattaagTGGAATTGAATTGAATAAAATTCTATGAAATTCAAATGGAAATGTAATTTAATTAAATCCAGAAATTCAGAATCGGCCCAAACCCTGGTATGTGTCATTAATAATTGCATTTCCATCCATTTGACTGCTGTACTTGTCGTGACATCTATCGTGACCTCTATACCTATACATTTAAAAACGATTTCTCCTGAAATCCTCCAAAATGTCTCCACGTGGCTCACTTTCAGACATCTAAACTGGCCAGACACACCTGCATTacctcagttctctctctgtatattaGCAAGAATTGACTGTAAAATATGAATAACTAAATAATGTGAATGTATGAGGAAAAGTGCATGTGAGGAATTTGGGCTGGTTACCCATGGGCGGCACACATGAAGTGGAATTATGTACTGTACGTTAACCTTATGCATAACGCAAAATACGTAGAAAATACATGTAAATAGAAAATATGCCTTTATAAGATTCCTTACTTGAACCAATCTAGAACAAAACTCCTTGGTTCAGGTTTGTATTGTGTTAAAAAATAGTATTTAATGTTTCAGTGGTAAGAAAACTTTTATCTTTCAGAATATTGATATAGTAAGCTTGTTCTCATATTAtcatagtatttttttttaaacaatcaaATATGAAGTCACCCTCAACACTTCAAGGATTCAGTAATATCATGATTGATTGGTTGGATACTTCACCTGTGTGTACACCACGTTTGTGTATTGTTTTGCTAGTATAAAAAATTAGGGCTTTAGATACCACATTGCCTCCTGATATTTATTTGTCTATTACCACTACTATTTataccactactattaccactattttTTTTCCTTTTACCTCTACCTGTCTTTAAAGTGTAGGTGCAAAAGTCAAGGGGCAGATTGGGCTGTCACTGCCAAGGAACCATTTCTTCTTCcctgcacgcatgcacacacatgaaaacacaagTTAGAAAGCTAAGACATAAGTTGTGAGCATCCCCTCATTCACATTTAGATAACAAGATAACAGATGTTTtccacacacacctttttttaaaTCTTCGCTATATAGTGCCCATTGCCTTATCCTGTAGTACGATCCAGAGAAAAGGAgaactgtgtttgtgtggctAAAATACAGTACATGAATGTGTCAGGCATATTCTGTCATTGAATCCCTCCTACCCACACTCTCATTAGTCTTACCTCACCAAACCACTTGTTCTTAACCTTTTTCTCTTAGGTAGGGGTTGATTTCTTGAGATCAAACTTCCCCAACCTTAGTGAAACTGCCATTTCATAGTGCACTTGTACTTTTCATTCAGCCTCACTTTTCCAGATTCCCTCGGTGACATTTATGTCTGGTGTCGAAGGTACTGTCAAATAATATCCTATGAGCAGAGGCACTGTTTCCAAAGTTACATGGTATATTGTGTGCAAGCAAGAATGCAAAAAATGCAAAAACAACCAGTTTAGCATGTGAGACTGACATTGATTGCAGATTATAGGGTGAGTCAAACACTAATACACATTTTTAactgtaaatgtttttattttattggtGTTAATGTAAGATTTATTTAAGGTGTACATATATACAGACAATTAACCATATAATCTAGATGTGTAAAACCACTATGTAAAATTACTGTAAAACACAAAGTATCTAATACAATGAATAAAGGTAACAAGGAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984061 lncRNA upstream 52522 35718932 ~ 35735970 (+) False G1732338
TU1984062 lncRNA upstream 53235 35685557 ~ 35735257 (+) False G1732338
TU1984064 lncRNA upstream 53235 35733241 ~ 35735257 (+) True G1732338
TU1984063 lncRNA upstream 62464 35718932 ~ 35726028 (+) False G1732338
TU1984059 lncRNA upstream 104320 35683917 ~ 35684172 (+) True G1732336
TU1984472 lncRNA downstream 3062 35985967 ~ 35986270 (+) True G1732722
TU1984845 lncRNA downstream 551929 36534834 ~ 36549893 (+) True G1733069
TU1984871 lncRNA downstream 591431 36574336 ~ 36576894 (+) True G1733094
TU1984831 lncRNA downstream 606658 36589563 ~ 36590879 (+) True G1733056
TU1984894 lncRNA downstream 627389 36610294 ~ 36610497 (+) True G1733115
XR_005038438.1 mRNA upstream 151354 35636587 ~ 35637138 (+) True LOC118942786
NM_001165066.2 mRNA upstream 278371 35503691 ~ 35510121 (+) False sh2d1ab
XM_021577600.2 mRNA upstream 520692 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 755076 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 857321 34917692 ~ 34931171 (+) True LOC110501070
XM_021577629.2 mRNA downstream 16916 35999821 ~ 36039069 (+) True sepsecs
XM_021577630.2 mRNA downstream 75211 36058116 ~ 36094464 (+) True lgi2a
XR_005038587.1 mRNA downstream 137611 36120516 ~ 36123923 (+) True LOC118942923
XM_021577634.2 mRNA downstream 206484 36189389 ~ 36235398 (+) False LOC110500325
XM_021577633.2 mRNA downstream 206484 36189389 ~ 36237829 (+) False LOC110500325
TU1983724 other upstream 304138 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 1919515 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2466731 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3626100 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3651796 32135955 ~ 32136696 (+) False LOC110501063
TU1984485 other downstream 58426 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 250217 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 774084 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1265722 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1388052 37370957 ~ 37371667 (+) True G1734420

Expression Profile