RNA id: XM_021577630.2


Basic Information

Item Value
RNA id XM_021577630.2
length 3950
RNA type mRNA
GC content 0.43
exon number 8
gene id lgi2a
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36058116 ~ 36094464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattGCGCGAAGGGAGCTGCAGCTGAATTGCTGATGTAAGGGGTTCAGTGCAGCATTTCATGTCGCAGGGTGGAAGGAAGCTTTGCAATCTGCCCGGCGTTTTTTGCTATCTCACACATGCAAATCCGACAAAAAAATATGCTGTCAATAGTTAAAAACTGCGTATTATTTTCAGTTGTGTGCTTGTACATAGCTACGCCGATTTCTTTAAAAAGGATTTCCAGATGTCCTTCAGCATGCAGCTGTTCCAAGGAGTCCATCATTTGTTTTGGATCTTCCTATGTCCCAAGGATCATCCCGAACGACATTAATTCACTGAGCATTGTCAACGGGTCCTTCTCCGAGATCAAGGAGACCATGTTTGCTCACATGCCATCTCTCCAACTCCTACTTCTTAATTCAAATTCAGTGATGACAATAAGGGACGATGCATTTTCTGGCCTTCCACACCTGGAGTACCTGTTCATTGAGAGTAATAAGATAGAGACGGTCTCCAAATATTCCTTCAGAGGACTCAGGGACCTGACTCACCTGTCTTTGGCAAACAATAAATTAAAAGCGTTACCCAGGGATTCCTTCATCGACCTGGACTCATTGATAGAGCTTGACCTGCGAGGAAATGCCTTTGAGTGTGACTGCCGTGCGAAGTGGCTGATGATGTGGCTGAAGAGCACCAATGCCACGGTTTCCGATGTAATTTGTGCCGGACCCAAGGACATGAAGGACAAGCGACTGAACGACATGGCCAGCCTGCACAATGAATGCATCTCCACTGATTTTATCCACCATCAGTCGGTGCCATCAGAGTCTCTGTCTGTGGACACATTCTCTTATAAAAATGACGTCTATGTGGCCATCGCTGCACCCAACACAGAGAGTTGTATGGTTTTACAGTGGGACCACATTGAGATGAACTTCAGGACTTATGACAATATCACAGGCCAGTCAATCGTTGGGTGCAAATCGGTCATCATCCAGAACCAGGTCTTTGTCATAGTGGCCCAGCTCTTTGGTGGTTCTCACATATACAAGTTTGATGAAGACCAGAGCAGGTTCAGCAAGTTTCAGGATATTGAGGTATCCAAGATCTCCAAGCCCAACGACATTGAAGCCTTCCAGATTTCTGGCGAGTGGTTCTTTGTGATTGCCGATAGCTCAAAGGCGGGGCTCTCCACTCTCTACAAGTGGAACGACAAGGGCTTCTACTCCTATCAGTCCCTGCATGAGTGGTTCCGTGACACTGACGCTGAGTTTGTGGATCTGGATGGCAAGTCCCACCTCATCTTGGCCAGCCGCTCCCAGGTGCCTGTAATCTACCAGTGGAGCAGGAATGCCCAGACGTTTGCCCTGCAGGGAGAGATCCCCAACATGGAGGATGTGGTGGCCGTCAAGACCTTCCGAGTCAAGGaggacctctacctggccatgacGCGCTATATAGGTGACTCTAAGGTACTCCGCTGGAGTGGCAAACAGTTTATGGAGATCCAATCCCTGCCCTCACGAGGTGCTATGATTCTCCAGCCATTCTCCTTCAAAGAGCGCCACTATCTGGCCCTGGGCAGCGACTTTACCTTCTCACAGATCTACCTGTGGGACGCTGATAAGAAACTCTTTGAGCGCTTCAAAGAGGTGTACATCATGGCGCCACGTTCCTTTACCGTGGTATCCACCGACCGCCGGGACTTCATTTTCTCCTCCAGCTTCAAGGGCAATACACAGATCTTCGAGCATATCATCATCGACTTGAGCTTATGAGATTTCCAGGGCTTCAGCCCCTGCATCTTATGTCTTCCATTATAAACGTTGACATTTttgtgggggaaaggagggagaagggtccaagagagggagaggtaactCAAGCAGCATTATCAAATATTTTTTCCTATTAAGCACCTCTTGTGTTTGTATACCATTTTAAATCGGTCATGTCCCTACTGTTCTATTGACTTTTATACGCACAAGTAATCTCGGTTAACCAAGAACTAAAATCTCAAGTCATTTGGTCACCTCGGTGATTAAGTTGTGGATCTATACGTGGTAGTTCCGGTTTGCAAAGTCTTGCAAAAGGAAACTCTCAGCCAAGTCTTTTCCTTTTCCACAATGTACATTGCCTTATCAGCACAGGCgttttagtgttttgtttgtcctGCTGCTGCGCCATCTAGCTATGAATAGTGATCACTCCCAACTGCTTTGTCGATACAGGGAAAAGTCGCAGCAGCGCAAACCTTTAATAACAATATTGTGACACAGAACCATTGTGATCCCGAACCCAGAACTCTTAAACAATGATTAGCAGTACACATTTATGTTTGTATTTGTTTATATCGTCTATATAAGCAGTTTCACAAATATTTGGGGATTTACAAAAGTTTTCATTGCTCATATTTGTTCTTTATTCCACATAAATGTACAATTACTCAAGACCCTAAACAAGTCCTTGCTGCAGAGTACAactagatatgtgtgtattgattgACTAAGGGCTATATTCAATCAGATCTGCTTTAGCCAACAACCATATAGCTTATTTTTGGGGCTGTGTCagaggtggaactgcgttagagctgtcaagTCCACAAGCAGCAcatggcattatacctaaagcagacattgccattggctgcatggAGTCACATTacgagaaatcccatgcagccttgttgaCAAGTtcaaacactggaatgtgagatgtaatctagaGCTCAATTAGGCTGATGATTTTCAATTTGAGCATCATTATTtctacagtgtatatatatagcctacactttctcattCTGAACTTCTAACGCAAGTAGGATGGTTGTTGCTTCGTAACAATGATCTGCTCAtctgctcaccgatttgacagctACAACGCAGTTACACCTCCGACACTTACAAAACATCAGTAATGCGGGTTTTGGCTGTTGCCAACTCTTGATCTGATTGAGTATATGCCTGAGGCATCATCATAGATATTGACTATGCTAGCTTGATTATTAAAAACATTGACCAAATAAGTCAACATTAATGCTCTACAGATGTATTCTTTTGAACAATAATGATACATATTAACATATTAACACATACTTTCTGACAGAAACACATACTTTCTGACAGCAAAGTTACAGTTGGTGATCAGAGTTCAAATGAAAATGTATCATTTGTTTTGAAGAGAACACAGACACTATAATTGtattgtagttttttttttacatacatttcccGGCCTCAAATGTAACATTTGCATAGTATATAATTTTACTGGTAGCGTATTTAACCACCATATGCCAATATTTGAGCCATACCTCCAACAATTCCTCTTCTAAAGAAACACGTGTATGCTGCGGGGAACTGTCCACTGTAAACTCCTGTCTTGAGGACTAGTAAAAATTGCTTTTCATAGAAACATATATATGAATGTTCTCTGCATGTTGATAAATGAGGCCGACTAAGAGTATGAGTCTACTTTATTAGACTATAGGCTGCTAGAGGAAATTCCTGCACAGTCTGCAGGTTCTCAATTATCATTTCTTTCACTAGCAGGTTGAAATATCCAGTATACAACTGCGCATAACCAGCTAGCATTAGTATGGTGGCTAAGTGTGACATGTTTGCCTATGGGAAATCCTAACAGCTGCTTAAATTGTTAGCTGAGTTTTAAACCAGACTTGTTCCTCTACTTTAGCCTCTAATATGCTACATTGTAAGCATGGCCCCAATGAGTTCAGACAAGTTCATGTACTGCATGCAGGCATTATTGATAGGGTTGagtaattattttagcaaaacacTGACCCTTCCAGTGTCACAGCTCTGTAAATAACTAGATGTCTGTCTATCAGACAATGGCATGTTTTATGCGTTTTATAGATTTAGTCAACCTATAACCTGAATATAGTCAAAAGACCAGGCCAAATTAATTAGAAGTTCAACAGTCACCGACAGAGATTTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984472 lncRNA upstream 71846 35985967 ~ 35986270 (+) True G1732722
TU1984206 lncRNA upstream 174364 35866094 ~ 35883752 (+) True G1732467
TU1984061 lncRNA upstream 322146 35718932 ~ 35735970 (+) False G1732338
TU1984845 lncRNA downstream 440370 36534834 ~ 36549893 (+) True G1733069
TU1984871 lncRNA downstream 479872 36574336 ~ 36576894 (+) True G1733094
TU1984831 lncRNA downstream 495099 36589563 ~ 36590879 (+) True G1733056
TU1984894 lncRNA downstream 515830 36610294 ~ 36610497 (+) True G1733115
TU1984895 lncRNA downstream 516152 36610616 ~ 36610846 (+) True G1733116
XM_021577629.2 mRNA upstream 19047 35999821 ~ 36039069 (+) True sepsecs
XM_021577628.2 mRNA upstream 75211 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA upstream 75211 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA upstream 75211 35788492 ~ 35982905 (+) True LOC110500322
XR_005038438.1 mRNA upstream 420978 35636587 ~ 35637138 (+) True LOC118942786
XR_005038587.1 mRNA downstream 26052 36120516 ~ 36123923 (+) True LOC118942923
XM_021577634.2 mRNA downstream 94925 36189389 ~ 36235398 (+) False LOC110500325
XM_021577633.2 mRNA downstream 94925 36189389 ~ 36237829 (+) False LOC110500325
XR_002470086.2 mRNA downstream 311535 36405999 ~ 36407509 (+) True LOC110500327
XM_036957713.1 mRNA downstream 331676 36426140 ~ 36446867 (+) False LOC110500329
TU1984485 other upstream 15628 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 573762 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2189139 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2736355 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3895724 32157912 ~ 32162392 (+) True LOC110500252
TU1984576 other downstream 138658 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 662525 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1154163 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1276493 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 1470964 37565428 ~ 37568953 (+) True G1734479

Expression Profile