RNA id: XM_021577633.2


Basic Information

Item Value
RNA id XM_021577633.2
length 5582
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110500325
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36189389 ~ 36237829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATAACGGCTAGGCTTACTAACTGGGTTAATACAGATGATTACATCATAAACATTGCGCGTGCAGACACCAGGCACTAGAACGCATGCAGTGACCGGTTGCGCAATTGAGAGTGAGAAACTGGGTTAGAATAAACGGAGGAGCTGAAGAAGGAAGGGATGAACAATGGTTTACCTCGTCTGTAGACACTATCAGCCTCAAACTAATGTAGACACgcacagaggggaggaaagaaaggggtgaaggaggaagacagagggaggagagaatggcACAGTCACATAGAGACAGTGGTGAACAATCGGTGGACGAAGCCTAGCTAAAGAAACAGAAGGATAGGACAGGAGGTCGGATAAAAGGGATAAACTATGTTCTTTTTTATTTAAAGATGGGGAGTGAAAGAGGGAGTGTTCGCCCTCGGCGTCATAACGCATCCATAGATTAGCCCAAACCAAACGCTCCACCGCCCGTCCATGGCGTAAAGACTGGGGTACATAAATATATCTGAAATAATTAAATAATTCGCTGTGGCGAGAAGAGCGTCAGCCGCAGTGTGTCTCTCCTTGCACCACGTAAGCGCAGCCGAAACCGAGACGAGGACagggaggacggagagagagaacaagccaTCCCTTTCCTAGCCGAACCAAGGAGAGAGGAAACGCGACAGGCAGACAACAATGGGAACATAGGTCTATATATACCTAAACCATCTGTGAGCAACCAGCACAGCGGAGGTTTTTGTGGTGTTTTTAGCGGTTAGCTATAAAGGAGACCGGGGATTCGGTGTTGCAGCGGCCGCGCTGAAGAACCGCACATGTCAACACGTTCAAGCTCCACATCTCCATCCCCGCCCTGCGCGGATCGCAGATCCGTCTAACGGCAACGCCAGGCAGGTTACCGAATAACGGAACCGTTAACGGAACCGGAGAACAGTGATGAGAAGGACTCGGATCAATGGTTTTATGATATGAGCCTTTATAAACGAATCAATTAATGAATTACTTATCATCGATGAGAAAGGACCAATCAAACAACTGATTTTATGGATTAATGTTGACATTTTCAGAATGATCCCTATAACCTGCTTTATCGGTGTGATGTGCTTTATCTAAGGATCTATAGGCTATGGGCTCTATTCATGACAgaaatatatacataaataccacaTTTAGGCTGATGACTTAGTAGTAGTCTTAACAACCCATGCGTTTCTTCCTATCTCTATCGATAGATACATGGACAATTAGGCCTACCCGTTAGATCTATGCGTTTGTCTTTGCATAAAAATATGTTTCGGTTAATTTAAAAACGAGTGAAGCAACCGTTTTTTCCTCCCTCTGCTGTATTGAGACGttaggcagcaggcaggcaggcagtcacaagcaacacacacaccatccgTCCCTCTGTGGACTGcacctctccatctatatcccttcctcccccctctatcccccctcctctaatcctccccatccctctgttCCATTCCCAGAttatcattttttattaatttgttaacGTATTAGCTCTTTTAAGGATTAAAAACTGTTCACCCTATCTCAATCCTATACGCCTCTCCTTCACTAGCATCTCATCGGCGcatccagacacagacacacaaacgtGACATACACACCGGACAGCTCGCCAATACAACACAGCAGCGATGGAGACAACTAAACTGCCCCCGACCAGCCCGTCCTCTCCGACCACCGGGTTCTCGGTACCGTCAGCGGAGAAGGTGGATGGGTTTCCCCGGCGCTCGATGCGTAGAGCCCGGCAGAGGCGCTCCCACTCCTCGTCCCAGTTCCGCTATCAGAGCTCCCAGGTCGAGCTAACGCCACTGCCGCTGCTCAAAGATGCCCCTGTGGCAGAGCTCCATGACCTGTTCTGTAAGAAGCTGCAGCAGTGCTGCGTCCTCTTTGACTTCCTGGACTGTGTGGCTGACCTGAAGGGGAAAGAGATCAAACGAGCTGCGCTCAACGAACTGGTGGAGTCTGTTGCTACAAGCAGAGGAGTTCTGATAGAGCCACTCTACCCAGAGGCTATTAAaatgATCTCAGTGAATATCTTCAGGACATTACCTCCCAGTGAGAACCCAGAGTTTGACCCGGAGGAGGATGAACCCACTCTAGAGGCCTCCTGGCCACACCTGcagCTGGTGTATGAATTCTTTCTGCGTTTCCTGGAGAGCCCAGACTTCCAGCCCTCCATGGCCAAACGCTACGTTGACCAGAAGTTTGTTCTTCAGcTGTTGGAattgtttgacagtgaggatccgagggagagagagtaccTAAAGACCATCCTGCATCGTGTCTACGGCAAACTGCTcggcctgcgggcatacatacGCAAACAGATCAACAATATCTTCCTCAGGTTTATCTATGAGACCGAGCACTTCAACGGTGTGGCAGAGCTACTGGAGATCCTGGGCAGcatTATAAACGGGTTTGCTCTGCCCTTGAAGTCGGAACACAAGCAGTTCCTGGTTCGAGTCCTGATACCTCTACACACAGCCAAGTCTCTGTCCATTTTCCATGCACAGCTGGCGTACTGTGTGGTCCAGTTTATGGAGAAAGATTCTACTGTCACAGAATACATCATACGAGGGCTCCTCAAATACTGGCCCAAAACCTGCACCCAGAAAGAGGTGATGTTCctaggggagatagaggagatacTGGATGTGATCGAGCCATCTCAGTTTATCCGTGTTCAGGAGCCTCTCTTCAAACAGATTGCTGCCTGCATCTCCAGCCCACACTTCcagGTAGCAGAGAGGGCCTTGTACTTCTGGAACAACGAGTACATCCTGTCTCTGATAGAGGAGAACTGTCAGGTGATTCTACCGCTGGTCTTCGCCACACTCTACAGAGTGTCCAAGGAGCACTGGAACCAgactATAGTCTCTCTGATCTACAACGTTCTGAAGACCTTTATGGAGATGAACAGCAAGCTGTTTGATGACCTCACTGCCTCTTACAAAGTGGAAAAACAGAAGGAGTTGAAGAGGGAGTGTGAGCGTGCAGAGCTGTGGCGGGGGCTGGATGAGCAGCAGGAGAGGAGACTGCAGATCCTGGGGGAGGCCAGTCGCAATCAGAAGAACCtccaggagagaggggagcctcCTCAGCCCACCTCCACACTGACGGCATTCCCTGAGCAGCCAAACCTCGAGCTCAGCGGAGCCTCTTCTAATACCTAGAACCAGACAGCGGAGGATCAGTACCAGGATACATAGAGTACTTAGAGGACATACAGAGACAGTATGCACATagccaaacacacacatgtacacacaaaggAGCAGACGCacacgctcaaacacacacacacacacacacacacacacacactgacaacgtacacataaacacatacagagtCGCACACAGGCATAtactgtttacacacacacacacactcatgcagaaTGTAAACAAAAGTTGAATCAACTCAAACACATAGACTACATTGAAGTGCAAACACAGCCCTCTACATACTCACTGGAAGACTACCCACACAAACTGCCCATCTTGAACAagacatatttctctctctctctcacactcactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcactcacacaggtACTGGTTCTAGCTGTCTAGGTTTTGACGTGGAACCGTTTTCCCGGTTCTCCGACAAAGGACTTTATACCGTCCCAAAAGATACAGAGGAATGATGACGTGAATGCTACATAATATTGTTGCTTCTTCTTCTATTCTtctctactgtactactactactactactactgatgtttttatatatatatatatatatatatatatatgtctgaatattatgattattatagTGTTGGTGGGAGAATCTTTAGTGTAGAACTCCTAAAACTTTAGCATAACTTGAGCATGgtccaaatcacaccctattcgcTACAGAGCGAGTGCACTATTGGCCAAATGTAGTACACTATATGGGGCCTAATCCCCATATTGTAGTGCAATACTACTGACCAAACGCAGTGCACTATAATGGGGAAAGGGGtcacttcccaaatggcaccctattccctacatagtgcactacttttgacaagcgccctatggaccctggtcaaaagtagtgcactatttagggaacagggtgccatttgggacgtaccaAGTGTATGATTTTGGGTGACCCCTAATCTCCTAAACTAAAACAATGTTCTGATATGTTATTATTCTTGTCCATTCATAATTGGGcatagagagaaggaagagagtcAGAAAACCAAGTTTTTCTAGTAATATTCTAATTTGTTTTGGATAATGTTTGTATTGGgcgtgtcctaaatggcaccattttccctatgaagtgcactacttagCACTACTTactacagtagtacactatatagggaatagggtgccatttgggatgtgagCTCAGTCTACCATCTGTGGGATCAGTCTACTAGTCCTTGATATCACACTGTCTTACTGTTCTTCTGTGCATCTTATCTTCATTCGTTTGATGAAATTATTTTGAATTTGTTTTAATAtttttatgtttttgtgtgtTCATTTTGGCAATATCTGATATttatgatatttttttatttgatctcTGGAATTGTGACCTTATTGCAGGAAGTTGGCAAAGATgagacgtgtttgtgtgtgtgtgtgtgtgtgtgagagagagatggagaggtcaTGGAAGTGTatgcgtgtatgcgtgtgtgttcatgtgtgtaagATGCAGAGGTGATGgaagtgtttgtgtgagagaatTCAGTATGAGTGTAACAGTGACAGGAGATGTGTAGGgacagagtgatagagggagagaggtggcatcgatccctctttctctcttctctcccattctctccttTCGTAGGAACAGGATTTGAATCAGAATGTAACACTTTTGATTGATTGTGAATCTGGAGGTTTTTCTTGCGTCTTGTTACCAAGACAACCAGACCAGCAGCCTTCAACACTCCTTTAACAGTTTTTAgtttcaacaaaacaaaaaaggacATAAAGAAACAAACCTCACTATCGTTAAAACACTTCCTGAATTTTGCAAGTTACCCATAATTCCCCCatttgtcagtcagtcagttcgcTGGGAAAATAATCTTCCCTTCCactattctgttctagaacaagAAGAATCCTTCCGGAAATCGGGAATGCTGGAATTGGAACGCAATTTATCAACTGAAAGAAGAGGTTCCCGTCAGTAGAATTATAGAACAGCAATAATAATGGAATTGAATATGTACGCATAAGTAGCATTGCTAAACTACAATTGCAGTGTCCTCCTGGTCTGGTTTGTAGGCTATCCGTGCTCAGAAACATAGAAACGATTGAGGATGACCATGTATTTTTTTTTCCGGGGACCAACAGCTGGGTAGATGAATGTACAGTCAAGTTAAACCGGGATTGTAGAAAGGAAAAGATGATGTGTTAAATTAACTTCACTTTGAGAAAACaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984472 lncRNA upstream 203119 35985967 ~ 35986270 (+) True G1732722
TU1984206 lncRNA upstream 305637 35866094 ~ 35883752 (+) True G1732467
TU1984061 lncRNA upstream 453419 35718932 ~ 35735970 (+) False G1732338
TU1984845 lncRNA downstream 297005 36534834 ~ 36549893 (+) True G1733069
TU1984871 lncRNA downstream 336507 36574336 ~ 36576894 (+) True G1733094
TU1984831 lncRNA downstream 351734 36589563 ~ 36590879 (+) True G1733056
TU1984894 lncRNA downstream 372465 36610294 ~ 36610497 (+) True G1733115
TU1984895 lncRNA downstream 372787 36610616 ~ 36610846 (+) True G1733116
XR_005038587.1 mRNA upstream 65466 36120516 ~ 36123923 (+) True LOC118942923
XM_021577630.2 mRNA upstream 94925 36058116 ~ 36094464 (+) True lgi2a
XM_021577629.2 mRNA upstream 150320 35999821 ~ 36039069 (+) True sepsecs
XM_021577626.2 mRNA upstream 206484 35788492 ~ 35982905 (+) False LOC110500322
XR_002470086.2 mRNA downstream 168170 36405999 ~ 36407509 (+) True LOC110500327
XM_036957713.1 mRNA downstream 188311 36426140 ~ 36446867 (+) False LOC110500329
XM_036957720.1 mRNA downstream 188311 36426140 ~ 36448989 (+) False LOC110500329
XM_036957717.1 mRNA downstream 188311 36426140 ~ 36457797 (+) False LOC110500329
XM_036957714.1 mRNA downstream 188337 36426166 ~ 36446870 (+) False LOC110500329
TU1984485 other upstream 146901 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 705035 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2320412 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2867628 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 4026997 32157912 ~ 32162392 (+) True LOC110500252
TU1984969 other downstream 519160 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1010798 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1133128 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 1327599 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 1522506 37760335 ~ 37763258 (+) False cited1

Expression Profile