RNA id: XM_036957717.1


Basic Information

Item Value
RNA id XM_036957717.1
length 3260
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110500329
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36426140 ~ 36457797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTATCGAAGGTTCTGTGTGTACAGTTGGACAATCGGTACCACGTGACCGTTTTCCTGGCTCGCCTTTGTGGCACAAATCGTGATTTTCGAGTCTCTCTATGGACAATAATGGGAGAAAACTGACAAAGACGCATATTTTTACGAGGCTTAAACGGATGTATTCTATTGTTTTGTGGTTCTTTCGCATTTCCGGGAAGATAGGAGACGCCGCCGTTGTTTAGTTTTTAGGACGGGTTTTGTTTATcacatctcaatttggttggtGAGTAGTTATTGAGCCGTCGGAGATGAGTGGTCCCGAGGTAGCGAAGACGCCGGGGGGCAGGGCGCCGGGGAAGGAAGGCATGGAGGCTGTAGCCAATGGCCATGCAGGAGAGGGTGAACAGGGAGGAGACGATCCCTTCGCTGAGTACATGTGGATGGAGAACGAGGATGCGTACAACAGACAgGTTGAAGAGGAATTGTTGGAGCAGGAGTTCTTGGAGCGTTGTTTCCAGGAGATGTTAGATgaggaggaccaggattggttCATCCCGGCCAGAGACCTCCCCTCAGGGATGGGGCAGCTCCAGCAACAGCTCAACGGCTTGTCAGTCAGTGACAGAGGAAACGCAGAGGAGATGGCGAGGAAAAGCAACTTGAACCCTGATGCGAAGGAGTTCGTTCCGGGAGTGAAATACTAGGAGTCCCCCTCAACCCCAGGGAGCACGAACATTCACGCTCACATAACCTTGCAGAGACTCTGGCGGCCTTGACCGCAAAACACACACAGGTCCAGGGTGTGTAGGTAGAAACCTGTAAGGGGGTGGGGGAACTTATTTTCTttaagatttttattttatttgtttcaaCTTGTAAACTAAAGGAAAGGGGCGAGGTATCAGTATCAACAGAGCCCTACAGAGggcactgctgctgctgctgctgcatttACATTCAAAGTTGTAtcccaaatagtaccctattccctatgtagtgcactacttttgaccagggcccagattcacaaaacactaTTAAACGCAAAAACTTACGAACTAGCTTGTTTTTATTCTTAAGTGTATTATCTTAAGATTTAATGATTTTCTTATGAACTTCTCAATCTTCTTAAGATGCTTGTTGCTAGGCAACCGATTTAGCAAGCAATGGCAATCATGTTAGCATATTTATTACTGTTCTAAAACATGGGTTTAAAATGATCAAAACTGAAACTTTTAGATTACGTTTGTGTGAAATAAACATGTTCAATTgcttttttacatttgtttttgtagCTATCTTGGAATTAAGAACATTTCCAATAAAATTTATTTTCAACTTTTTACTTAGGGAGAAAATGTGCAATAACATTTCCAATAACCTTTttgaggaatagcaactttgcttaACTTTCTTCTTAACTACTATTTTGTTCCTTAAGACTTTTCTTCTTAAATCTATATTtaaggttttgtgaatctggTCCCAGGGCCCTACCATTGTTGGCCCAGGGCCCTACCATTgtgggccctgatctaaagtagtgcactccatAAGAAAACGGGTGCTTTTTCGGATGCATATAAAGGCGTACATATACAGAGAAATTGCAAACTCTTGAGATTTTCCaactttattttttacttgtcATGGTTGCCATGTTGGCACCTAAAAGTTCCATGTGAATACAACAAGCGAATTGCAAATGATACCCTGTTCCACTATAGAGTGCACTACCTAGtaaaaatagggtgccattttgagaTCTGCATTTATACGTTTCATGGCGGCCTTGTTGGCGCCAGAATGTTCCACAACGTTACCATTCTAATTGGAATCCAACTACGAATGTAATTATTGTTAACGAACGACAACTGGAGCCAACGTGGACGACACGGTTGGCCGTTCTAGATTTCTGTAACTACGTACCTCTGGTCACAATATGACATTActcttctgtctcatttcccgttatgacatcatcatcatacaGACTCACTCTGTGTAGAGCTGTTTTTATTTCTCATGGGCCTGGTTCCAAACCAATTATTCATATTTCCTATCCCCTACACCCTTTAAACTCAACTCttgacctcgaagccagttccgctgcatttttttaaaaatctttccctctaatcagggactgattttagaactgggacaccaggtgagtgcaattaattatcaggtagaacagaaaaccagcaggctctgacCCTCGTatggtaagagttgaatacccctgccctACACCATTGTTCACTCCCTCCTTGTGGGTGAAAAGGTTGAAGTTTTATTCCccataggctgcgtttacacagtcACCCGAATTCTGGTATTTTTTTCCcagtaattggtcttttgaccaatcacatcagatcttttccaatcaaatatttttcagagctgttctgattggtcagaagaccaattagtgaaaaaaatatcagaattgggctgcctgtacaAACGCTGCAATATAGTCCTACTTTTAATCAGAACCTGGAGTCCTGATCTAAAGAAGTGCATCATTTGAGGTGTCACATGATAGGGAACCAGAGTGCATGGGTTAGGGTATTGGTGTTTGGTTTGTAACTAGGCCGTTCCCTGTtatgcgtctcaaatggcaccctattccctttatagtgcactacttttgacctgtgctctggtcaaaagtagtgcactcaatggggaatagggtgccattgccTCTCGCAGTACTGAAGGAATGGAAGCATCATGTTGAACTTTGTTGGATCAATAATGTTGATCAATACATTATCAGGTTTATCTGTTAATCAATCTCTTGTTTTTAGAGGAGCAAGGTGTTTGTCTCTTGCGTTGCCGTAGCTTGTGGTCAAAACGGGAATGGATGTGtcccccaaatagcaccctatgcccttttttttttaaattgaacctttatttaactagggccCATAGCACTCCCTATGAGCTCTCAAAGGGTCCTGGTTATAAGTGATGCACTACATAGGCAGTTGGGTACCATTTATAAATCACACTAATCTTAACTgttatggtgggggggggggggggacgctaGATTAGTGTCTAGGGGAGGTTTAAAATGCATGGGTGGGACTTGAGCGAGGGTTGACTAACCACAGGCCACGTGCACCCTGGGTCAACCAATAGGAATTGTCTGCCAGTTGGATTTACATGAAAATAATGGATTTTGAGTTGGAAAAAGTCCCAACGACCCAAAGTACGAATTTCAATACAAAAAGATGAATAAAAATGTGAAACTGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984472 lncRNA upstream 439870 35985967 ~ 35986270 (+) True G1732722
TU1984206 lncRNA upstream 542388 35866094 ~ 35883752 (+) True G1732467
TU1984061 lncRNA upstream 690170 35718932 ~ 35735970 (+) False G1732338
TU1984845 lncRNA downstream 77037 36534834 ~ 36549893 (+) True G1733069
TU1984871 lncRNA downstream 116539 36574336 ~ 36576894 (+) True G1733094
TU1984831 lncRNA downstream 131766 36589563 ~ 36590879 (+) True G1733056
TU1984894 lncRNA downstream 152497 36610294 ~ 36610497 (+) True G1733115
TU1984895 lncRNA downstream 152819 36610616 ~ 36610846 (+) True G1733116
XR_002470086.2 mRNA upstream 18631 36405999 ~ 36407509 (+) True LOC110500327
XM_021577633.2 mRNA upstream 188311 36189389 ~ 36237829 (+) False LOC110500325
XM_021577634.2 mRNA upstream 190742 36189389 ~ 36235398 (+) False LOC110500325
XR_005038587.1 mRNA upstream 302217 36120516 ~ 36123923 (+) True LOC118942923
XM_021577630.2 mRNA upstream 331676 36058116 ~ 36094464 (+) True lgi2a
XM_021577638.2 mRNA downstream 65574 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA downstream 65579 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036956504.1 mRNA downstream 208814 36666611 ~ 36756612 (+) True LOC110500825
XM_036957723.1 mRNA downstream 758408 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 790499 37248296 ~ 37311240 (+) False zgc:109889
TU1984576 other upstream 189875 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 383652 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 941786 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2557163 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 3104379 33321453 ~ 33321761 (+) True G1729465
TU1984969 other downstream 299192 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 790830 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 913160 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 1107631 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 1302538 37760335 ~ 37763258 (+) False cited1

Expression Profile