RNA id: XM_021577637.2


Basic Information

Item Value
RNA id XM_021577637.2
length 4011
RNA type mRNA
GC content 0.51
exon number 18
gene id si:dkey-183c6.8
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36523371 ~ 36588040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTATCCTCCATTCCTCACACCTTGCATTTGCTTGCAGGAGGTGAGTGCGCCTGTGCGGGGGTTGAGCTAGCTGAGCAGGGAGAGCCAGCCGTGGCGGCACAGATGGAAAGGATGGAAATGGAGAACTACTCCGGCGCCTGACCTGAGACGGTACTTGGAAACGTTCGGTAGGCTAGGCTACTGCTCCGCTCGGTTGGATTGCCGGAGAGAGGCGAAGCGCACGGTGAAAGCAGGGGCGACACAGACAGAAAAGATGGACGGGAGAAGCGAGTTCCTTTGCGGGGTTGTGGAAGGGTTCTATGGGAGGCCCTGGTCTATGGAGCAGAGGAAGGTCCTTTTCCAGTGGATGCAGAGGTGGGAGTTGAACACCTATCTGTACGGTCCTAAAGATGATCTGAAACACAGACTACTCTGGAGAGAGGTCTACTCCCCTGAAGAGGAGGGTCAGTTGCATACTTTGATAGTAGAGTCAGAGAAGAGAGGTCTGAGGTttgtgtactctctctctcctggtcaaGACATTGTCTTCTCTTCTTCCTGCGACCTCTCCCTGCTTAAACGCAAGCTACGACAGgtgTCAAAGTTGGGTTGCCAGGCATTTGCGATCCTTTTTGATGACATAGACCACTCCCTGTGTCAGGCTGACAGTCAAGCCTTCTCCTCATTCGCTCACGCCCAGGTTTCAGTTGCCAATGAGATCTACCGATTCCTGGGAGAGCCGCCCGTCTTCCTGTTTTGTCCAACAGaGTACTGTGGCTCTCTATGTTCTCCCAGTGTATCTAAGTCTCCATATTTGATGACTGTTGGAGAGGACCTGCTGCCTAACATCTCTATCATATGGACCgGTAGTAAGGTAATCTCTAGAGAGCTGAGTGTAGAGGGTCTGTCTGAAGTACAGTCTGTCCTACAGCGCCCACCTCTGGTGTGGGACAACCTGCATGCAAATGACTACGACTCCAGACGTCTCTTCCTGGGTCCCTTCAAGGGTCGCTACCCCCAGCTTGCCACCCAACTCAGGGGCTTGCTACTTAACCCCAACTGTGAGTTCGAGGCCAACTACATACCCCTGCACACGCTGGGGACTTGGTACCGCactgggaggaaggagaagaaggATGAGGAGCACCAGTACTGTCCAGAGATGGCGCTGTCTACTGCACTGCACGACTGGATGGAAGAGCTCAGCCAACCACTGCagccagGTCGCCAGAGCAGACAGGCAGACCAGAGGTCATCGGGTCAAAAGTTGGGGACCCTAGAGAGTGAAAACTGTCTCCCCACCACCAGAGAAGGTCGCCCTAAACCCCCTAGAGAACCTCCGCAGGGGGACAGCCCTCCCCCCTCCAGCcctgagggagaggaaggggtgaggaggggggagaaagaaggaaggagtgagggaggagacggagaggagagagagaagaaactcCACAACAACCAGTTCCAACAAGGGCCAGGCCAGCCAAGGAGTCCAGGGGGGGTGCTGTGTGTTGAGAAGGCTCCTCTAAGCGAGTCCCAAATCCGTCTGCTGGTAGGTCTCCACTACCTTCCCCATGAGCACGGCCCATCAGCCCAGAGATTGTTACAAGACCTCACCTGGCTCAAAGAACACTGCCATCTGGTCAGCGCCAATGACAAGAAGGGACCGCCGCagaagGCGGAGGAGTGGCGTGGCCGAGCGGCTGGGTTCCTAGGTGTGTGTGAGGAGATTGCAGCGCTGCACAGTAGTGTAGTGAGTGGAGTGAGCAAGGCCGTGCTGTATGACCTTTACCCTTACGTATGGGACCTCAGAAACACTGCACTGGTGGCCAAGGCCTTCATCTGCTGGCTCGATGGGCGTGTGTTGAGTGACAGCTCTCCGTTGGGTTCCTGGAGGAACTGCTTCCACTGGTGCGGGACGACCACGGGGGCAGAGTTACTGGGGGTGGAGTCAGAACCCTGGGTGTTCAAAGGGGGAGTGTCCGGAGAGTTGCAGATGCTTCTACCTATAGGCAGTAACAGTGAACTGTTcagccaccctcctcctctcttccccacctcacGACTCTACAACATACGACCCTACCACAACAAGGACAAGGCGGAGCTGTATTGTATGGTGCGCCAGCTTCAACAGGGAGCCCAGGGGAGCCCTGATTCCAGCCCAGCACATCCTGACCTCATcggagacagGTGTCTGGGGCCCTGCCTGGCTTTGTGTCCTGAGTACAGCATGGTGCTGGAGGATGAGctaggtgtgtgtgggtgtgtgttgggtgtCGTAGATGTTCGTTCCTTCGCCAAGCGCTGCCAGACTTGCTGGATGCCCGCCATGAGAGATAAATACCCTCCACGCACCGGACATGCCAACTCACAGGAGGTGTTGCAGCAGATGGAGGAGGACCAAGGGGAATACCcagactctcttctctaccactttCCCTCCCAGCTCCGTCTGGATGCTTTGCCTGACCTGGTGGACATCAGTGTGACCCGCTGCCTGCTAACCGCACTCCTCACTGCCCTTAAAGCCAatggttCTCATGGTGTGTTctgtgagatgcagcctacagatCGCATGAGGCTGGACTTCCTGACTAAACTAGGCTTCCTGGAGATCATCAGAGGAGAGGCACGACACAGAGAGGGAGTGGTACTGGGCAGGCtgctctgaacacacacacacacacacacacacacacagaaatgtacACACAAGAGGTGTAATGGTTTACCAAACCCACGGTTCGTTATGCACATGATTACTCATCAAAAGTAAATTTAAAATAAAGTGCAATATGCGTGTGAAATCAATGTGTAAAAATGGCTCAGACATTGTATAGGTCTATGCTAATAATCTTTTTCTTACAAAGAGAAAAAGATGTTCACTTGTGTGACTCTCATAAAGAGAGCATGTCTGTAGCACAGTACTTCTCATCTCCCACTCCGAGGTAATGTGATGGGCTGTCACTGTTAAGTAGCTCTGTATACCTGGAGGTCCATTCATCTGTGGTAAGCATAACAGAGTGTGAATTGGCAAATTAATTTGTCGACCTCACCACCCGCCATTGTACAGAACTAGTTCCCGGCTGCGCCTCACAAAATGACAGTTTTTAAGTGCACCAATTAAGATCACAATTTTGATTACAAAGTGCGCATAGGCTGTCGTTGTTTTAAGGGAATAGccagaaattgttttttttttcagtaCAGAATTACTAGAGGCATACATCGCAGCATAGTCATagcatatatttaaaaaatgtattcattaaAGTTCACAGTACGACCCAAGGTCCCTGTACTGCCACCGTTACACCCCAATACACACCCATACATGCACGCGCTCACCCATTCAtttgcatgcatgcacgcacacacacacccagcacaTGCTCAAAAACACACATATACTCATATAAACACTGTGGAGTGCAAAAGAAACAATATAACTACTGTAAGCTTAATCACACACAGGTGATACAGGGTAATGGATTACACAGTGCTGTCTTTACACACACGAAAACACATGAAAAGACAGAGGGCAAACATTCacacgaacacacaaacacatatgcgAACACagatatgaacacacacaagGCTGAGGGTTATGTGGATGATGAAGACAGGCACAAAACCAatatgtgcatcagatggcacaCACGCAAACATACACACTGATAAATCTTACTCAGCGTAGGACATATAGCATCATTCATCACGTCCTTTTATTTCTATTTTCTAGAAGCACAAGAACAACAACGCATCCTTTAAACGTTTTATACCTGAGACATGTCTTCACTAGAAACCAAGAATGTCCTTTTCTATTGAGGAGACTTGGGCTGGGATTCAATCTGATCCTGCTTGTAGACAATGCAGCTTTTAAAGGCAATATCCCCACGTTTGCGGAGATCGCATTCAAGGGATTAGCACGGACCCTGGAACtgatcatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984472 lncRNA upstream 537106 35985967 ~ 35986270 (+) True G1732722
TU1984206 lncRNA upstream 639624 35866094 ~ 35883752 (+) True G1732467
TU1984061 lncRNA upstream 787406 35718932 ~ 35735970 (+) False G1732338
TU1984831 lncRNA downstream 1523 36589563 ~ 36590879 (+) True G1733056
TU1984894 lncRNA downstream 22254 36610294 ~ 36610497 (+) True G1733115
TU1984895 lncRNA downstream 22576 36610616 ~ 36610846 (+) True G1733116
TU1984910 lncRNA downstream 44724 36632764 ~ 36632984 (+) True G1733131
TU1984914 lncRNA downstream 51433 36639473 ~ 36639697 (+) True G1733135
XM_036957715.1 mRNA upstream 65579 36426786 ~ 36457797 (+) False LOC110500329
XM_036957721.1 mRNA upstream 74387 36426172 ~ 36448989 (+) False LOC110500329
XM_036957719.1 mRNA upstream 74387 36426787 ~ 36448989 (+) True LOC110500329
XM_036957716.1 mRNA upstream 75691 36426782 ~ 36447685 (+) False LOC110500329
XM_036957712.1 mRNA upstream 76505 36426776 ~ 36446871 (+) False LOC110500329
XM_036956504.1 mRNA downstream 78571 36666611 ~ 36756612 (+) True LOC110500825
XM_036957723.1 mRNA downstream 628165 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 660256 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 660257 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 660257 37248297 ~ 37311240 (+) False zgc:109889
TU1984576 other upstream 287111 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 480888 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1039022 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2654399 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 3201615 33321453 ~ 33321761 (+) True G1729465
TU1984969 other downstream 168949 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 660587 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 782917 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 977388 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 1172295 37760335 ~ 37763258 (+) False cited1

Expression Profile