RNA id: XM_036956504.1


Basic Information

Item Value
RNA id XM_036956504.1
length 8100
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110500825
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36666611 ~ 36756612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGCGTCAGAAGTTTTGGTTTTGGAAGAATACTAACGTAGCGAGGCGTAAAAAGACGCCTGAGCAGAGTACTCACAACTGTTTTTTTCAGGGGAAACTGCTGTAGCCCTGAGAACCGGAAACATCCGTTTTCACCACCCCGGCGGAGAGTGGAACACTAACGCTACTGCCTGAACTTTTTTTTTTAGCCCTCCCCCAATCTGTATGTATCACTAATGTCTCTGTTCGATTTGTTGCTTTATTGCAATGGAATGGTAGGACCCATTGGCTAGTAGTGATGGAGACCGAGTTCTAAAACAGCGCAGGTAGAAAAGTGACTCATTTCCACTCCGCTCGGTCGGTTACCGCGAGTATAATAACGTTAAAAGATATCTAGAATGGAGACTGTTGAGCAACTCGTGTCGTTTAACCATATCCCAGTCCAGTTAAACGGAGGCACGCCTTGGGGGTTCACGCTGAAAGGAGGTCTTGAGCACGGAGAACCGCTCATCATCACTAAAatCGAGGAAGGTGGTAAGGCAGAACAATGTAAGAAGCTGAGAGTGGGTGATGAACTGGTGAATATAAACGGATCAGCCCTCTACGGTTCAAGACAGGAAGCTCTTATACTCATCAAGGGATCCTACCGGATACTAAAGATCACCGTATGCAGatgCAGTGTACCTGTGATCAGGCCTCACTCGTGGTACCTGGCCAAGCTTTCATCAACGGAGTCCCCCCACAGTTCTACCcctgtcccccctcctcctcccccgtcCCCCCCATCTGCCATGCAGCTCCATCCTGGGCCCTACACACTACCCTGGCACTCTACAGCAGACAACAGTGATCTGTCTATCCAGTGGAACAAGCTCTCCAGACACTACTCTACAGACAGAAGCAGTTCCCTAAGTAGCATGGACAGCCTTGACCCTCCTAGCAGCCAAGTGTACTACGATTCCCATAATTCCCCAGTGGACCCGGCCATCTTCAACAATAAGAGAGACAATGATTACCACAATTCACCAGTGGACCCTGCTATATTCAACAATATAAGAGACTCTGCCTATAGCTCTTTCTCAGCTAGTTCTAATATGTCAGACTATACTGTCTCATTAAGGCCCGGTGAGGCCTGTTCTATGGAGAATATCCTCCGAAGCCTTGGGCCAGGGGGACCCGCCTGCCGGGTTTATGCCTGTGGCAATGCACCATCCCTGGGGAGGGAGTCGGGCGAGGCTCAGGATGAGACCGGTACCTCAACCCTACTACTAAAGTCGAGGTCGCTTACCAGGCCAAGAGTGAGGCATCCGGAAGCGAAGGAGAGACCATCTTCGTACTGTTTTGAAGAGGAgcggagagaagggagaggggagaggggtggaggcgGAGGGAAGAGGGGTGCTTCAATTCCCCCCCTTCCCCCAACCAGGAAGGACAGTTTTAGGGCCACGAGGGGTCGCTTGGGGATTACAGATGTCAAAGATCAACGATGCATCTCTGCCCCCGTCGGAATTCCCAGCCTCTTCAGTTGCCATGTCGAGGACGATGGCGACGATCCTCAGAATGTTCCTGGTGTTCCGGTTATTCCCAGCTGGAACGGCTATCCCGCTCCCTGCAAGGCTTCAAAGGCAGAGGGAGACATGGGAAATGGGAAAAAGAATGGGGTTGGGAATTTTAAAGGAGATTCTTTGGAGCAATACTACACCCTCATCTCCAAAAAAAAAGAGTCCCTTGTGAATAAGAACTCAGAGATCCAGGAGATCCacccagactccctccacctccctgccCTAGAGATaagctcctcttcctccatccccgGCTCCAGTTCCCTACCTCCAGACAGCTCCATAGATCCAGACCCCCCAGGTGAAGCCAACCACCTCCTCCCCCAGAACAAGCACTGCTCATCTGGTCTCTACAGACAAAGCGTCCCTGAGAAACTCTTATCGCAGCTACGTCATCTAGAGTTTTCCAGTGACTCTTCGGACCATAGCTCCGTCTCCCCCTCCAGCTCCCAGTGGTCTCGCTCCCCCCTTAACCCCCCCAGGGAGGACCTAGGAGGGGATATAGGGAGTCACgacacctccctcctcctcctccagcagaACACGGGGGAGTGGGAACAAAGGAGTCAATGCTCTACCCCAGGATTGGTGGACATTGATGGGATTGGGGAGGCAGGAGAGGTGAGTGTGGTGGTTTGGGAGAGTAGGGAGGTGGTGGCGGCTGCTGGTAATCGCCTCTCGCCCATCCAGGTCCAACACCCCTGGGGTAGGCCTCTGGTGAGTGTTCCAGGGTCATGGGAGCCCTCTGGAGATTGTACACAGGGAGAGGTGAGCTCTGAGCGGATTTGGGAGACCGACTTTGGGCCTCTCAGTGCTGCAGCCAGTGTAGACAGCCTACTGGAGGGAAGTCatagaggaggagcaggaagaagGGATGATAATGAAGGAAAGGTGCTGATGAAGAAACCTAGGAGTCACCGTTCGTCCCGGGCACGCCGTCGTAGCGAACGCTTCGCCACGAACCTCCGTAACGAGATCCAGCACAAGAAGGCCCAGCTGTCCAATAGTAAAGGCCCAGGAGGGTTGCTCTACAGCGGGGAGACAGTTGAGGAAGAAGAAGGTCCAGACCTGAAAATCCAGGACCTCGTGAGGAAAGAGGCTGAGGACGTTGATCCGCCTGCCAAGGAGAGCAGCTCCCAAGGCGTGTACACCTGTTCCGACATCAGCCTCTCAGCTCCAGCTCCTGGAGGTCTGAACAGACTATCCTCTTCTTCCACCCTCCAGCTCCACCAGCCGTCCCTAGCCCCAGTTTCAGCTCTACAACCCCCCAGGGATGAAGAACCTGAACCACCAGGGAAGCAAGACCAAGCTACAGACTCTTCCAGGCCACCCCAGAGGTCCGTCCCAACCTTGCCCAGCTGGGGTATGGGTATCCAGGTCGTGGAGGAGCTAGCTCCAGCTGGTAAGTCCCGCCGATGGAGATGGACACCCGAACATAAACTCCAACCAGAAATTGACACTGACCGAAGGGGGGAGAGGGTCGGAGTGGCCTTGGGGGTGTCAGGACGAGGGAGGGcatcctctgcctcctcttcttcttctaccacttGTTCTTCCCACACTGAGGAGTCTGATATTTTACCTTTCGCGGACCGCTGTAAGTTCTTTGAGGAGACAAGCAGGAGTATATTGGTGTCAAATTTGCCAGGTCTGACGAGACGAATGCAGAGGCCAGATAGACATGAGAGGCAGCCTCATCTGTCAATGCTGGAGAACCAAAGAGGGGGCTATGGACAGGGACAAGCCCAGAGGAGGTACTCTTACCAGGGTGGATTCGAGCGAGAAAGTCCCCTTTTGATTAATACCATGGAGGCCCGGAGACAATCGGTTAGTgggaatagggagagagaaaaggagagggagagagagaagcagagggaaaaagagagggagatggaaagggaggtaagagcaagagagagggaaagggaaagggaggaaagagcaagagaagagagacaaagagaggaaaGGGCTAGACTgagagagctggagatggagagcgaaagggggatagagagggaacaAGATagtgagatggagaaagagagacaaagtgagagagagaggaaaagagagagggagagaaagtcaCTCTGTTTAGCTCAGGATCTTTTTGCCAGTCAATCCCAACCCCGTGCCTACCCCCAGACCCACTCCCATCCCCAAACCCAGATGGAGGCCCCTCGTTCAGCCTTCCACCCGGTCAACACCGCTCTCCTCCAGGATAACCAGGCTCTTCACCAGGGGTATCCACCACAGAGCTACACACCAACAGAGGCGTATCCTGCTGCGTCTCGACCGTTACCGTGGGAACAGACACAGATCAACAGGAAGTTCAGCCTGACCGAGAGggACTACCCCCGGTACAGACGTGATTCATCCACCGGGCCACCAAATTGTGCTATAACAGTAACACctgactaccaccaccaccagcaagTTTCCCAAAGTGGGGGTTGTTGGAATGGCTTGCTGTCTGCCTGTAGTGTGGACGAGGAGGACCATCACCAGACGTCTATGGTGGTTAACCCCACATCATATTCATCTTCATCACTACTACGAAGCAGGGTTATGTCCGAGAACGATCTACACTTTGGCTCCACCCACCGCCGTACCTCACCCTCGGTTGCTATGGTGACACCACTGTCTGAGCTGGAGGAGGGAGGCGGGATCGAAGGGGGAAGAGTGGGAGTGGGGGGAATTAGGGGAGCGGCTAACAAAAATAAGACTCTACCCCCTCCGAGGCCACCTCCCCCCAAATGGGAGCAGTTCCACCGCAGGAGAGCCTCCCACCacaccctcttctcctctcctctcctctccacctctgtttcttcatccatccatccattggtaaaccccacccctcctcctctccctctcataccACCAGAGGGTCCCACCTCTCACTCTTCATCTCACCCATGTCACCCTGAAAAGAGTGAAATGACGCGTCAGCGCTCCTACAGCCTCCCGCCCCAGATGGAGGAGCTAGAGGGGTGCCAGCGCTGCATCAGAAGCCAAGTCCAGGAATTGCGCTTTTCCCAGTCTCCGCCTAGTCCAGGGTTCACACACACGGCCTTCCGGCCGGTGGCCCCGCCCCAAAGAGATAAAGACACTCCCCCTCGCTACAACGACACACTGCCGCCATCAGAAAGCTGTGTCAGGTTGTACAACATGGTTGACCAAGATTCTCCTGCTGTATTGAAGCCTATCTCTCATAGACAGCAGAGGGCCAGGGCTGAGTGGGAGAGAACTCCGTCTCCCAGAGTGCATAGCTTCTCAGGTCAACTCACCATAGAGAATGGCGTTATCTCACCAGAGTCCTACTTCGCTATGAGCtatgaacaacaacaacagttacaGCAGAATAGAAGATTGCGGaatcacccccacaacaacaACGACAAGCCGGAATTGGAACAAGAACTATTGGAACTGAAACCGGAGTCCGATTTTGGCCCGAGCCCCGCCCAGAGCTTGGAACAGGAAGTGGACATCCCCATGGAAACGGACATCGACGACTCCCAGGAGGAGGGGCTTCCAGAGGATGAAGAGCCAATCAGGACAGAGCTACAAGGTTTCGCCCTGCCGGTCACGGTGCTGGAGACAGACATCGACACGCTCCCTGATCAGGAGGCCTCGCCAGCGGgtaggatgacagtggagaatgGGTCTCTGGATGGAGAAATGGAGGACCAGGGGATGAGGACCAGAGAGGAACTCATGGAGGAGCTGTTTCCCCAGAGCATTGAGGGCGAGGCAGGCACAGAGAGCTGGAGAGGGGCCTACCGTAGCCCCAACCTGGAGCACAATACAGACAGCCTGGATAGGCGTTCTGGTGCCAGCTCCAGTTGTTCGTCCTACTACTCTACCTCAGCAGCCAAAGCTCAGCTCCTCACTCAGATGAAAGACTACTGCTCAGACACTAGAgacactgatgatgatgatgaggacctgtcttacaagAGACAGTTGATGGAGAGTCTACGTAAGAAGCTAGGAATTctgagagaggcacagagaggtcTACAGGAGGATATACGGGCTAACGCACAGCTGGGAGAAGAGgTTGAAAGCCTGGTGCTAGCGTTCTGTAAGCCCAATGAGGTGGATAAGTTCAGGATGTTTATCGGGGATATGGATAAGGTGGTCAGtctgcttctgtctctctccGGACGGCTACTTAGGGTTGAGAGCTCACTGGACAACCTGGAGGCCGAGACTGGACACTATGAGAGGctccccctcctggagaAGAAGCGTCAGCTCCTGGTGCAGCTGTCAGAGGCCCAGGACCTCAAAGAACATGTAGACCGACGGGAGCAGGTTGTGGGAAGGGTGCTAAGACGATGCCTCTCCCAAGAAcagCACCGTGACTACAGTCATTACGTCAAGATGAAGGCAGCATTGCTGGTAGAACAGAGGCAGCTGGAGGACAAGATCAGGCTGGGAGAAGAGCAGCTAAGAGGGCTACGGGAGAGCCTAGGGATGGGATTAGGGATGTCCATGGGATATGGGCACTACTAAACCCCAACCAAGAGACCTGAAAGCTGGGCAGATGGATGGGGTATCGACACTATTGAGAGAAAGTGAACAAGGACAGTTAGAGCAGTTAAGAACCTTAAGGGAAAGTCTGTGTTGGGGATGTCCATGTTGATGGGGTATGGACACTATTGAGAGAACTAACACTAACTTAAAGGTGAATTTTGCTTCTTTTTTAAAAAACAACTCTCTATTCCTAACACTTTTTTTGCgatttcacttgtttttgagaaacttaccccaaCCAGTGATTCACTTCCTCATTGTTGTTGTGCAGTACGGGGGCTCTGAAAAAACAGGGTCTCTGAACTAACATGAACAAATGTTCCAAATACGTCCTTTTAGAAATGGAAACACCGAGTttagtgatgcaggtctttagatgttgtacatgtgaaattgtgtaatttcgAACTTTATCCACAACGTTATATTCCATTTTGTGTGGAAATGAATTTCTGGTTGGGGAAAGTATCTCAAAATCAAGTGAAATTGCAATAAAAGTGTATTGACTCTTCTGTGACATGCCATTTACATCAAAATAATATTATATTGTAAAAAAGCAAATTTCTCCTTTAAGGAAACTTTAGAAACGAGTTGATGGTGTTAGGGATGGGCTGGGGGATGTATGTGGGGTTAATTCATTATTGAGTGAAAACCACCCTGCCCAGGGAGACCCTAGAGTGGGGCAGATGGGCTTAGGAATGGGGTTAGGGATAGGGAGAGCCATGGAATGTCTATGGGGTATGGGCACTATGGGGAGACAGGCAACCTACACAAGGAGACCCTAGAGTGGAGTACATTAGCATGGGGGGTGGGGTATGGACACTATTGAGAGAGAACCAACCCAACCTAAGGAGAGCCTGGAGAGCTATGGtagagtttagggttaggggtagagctGAGGGATGTCCATGAAGTATGGGAACTGTAGGGAGACAGCCAACCCACACATGGAGGCCCTAGAGTTGGGTAAATAGGGATGGGGTTAGAGTTGGGGATGGGACATGGGCACTACTTCCTAAAACACTCCAGTACTTTTCCTGACACCAACATCTACACTGTGTTAAACAGAGGTGGCCATTAAAACCCCACAAGAGAATGCATTAAGGCTGCACTTGGCAGTATTTGTCCGTTAAGAAATACACACCTACTCTTTGGTGTTAGACACACTGTTACACCCAAGAGTAACAACTATCGTTCACTTACCAACTGTAACCTCACAATCGCATACTCCATGCACAACAAAACGAGGCCAAAGAATACGctgttgtttagtgtgtgttactgaacaagactggagaaagtatttatttattatttatatcTCTGTTGAGCAATACTGACAGGGAGGATTTGGGGTGCTAGACGAGAGCATTTTCATCAAACTGTTGGCGAGTGCATTGAATACATAGAAATGGATAGAAGGTGCATATGCCAAAAAGCTGCCCATGCTATCACATCAAACATTATTGCAAAGAAAAGCCCTCTATCCAATTCTATGATTGCATATAATCCTATTACAGTAATATGTCcagaaatggagagagacagcTGCTTCTCTCCACTCTCATATAACACTAtactagcctgagtgccagtctgtttgtgctatcatgtgCTATCATGTGCTATCATGCTAACTCCTTAACGGTTATGGCTGGacatgtttggcttgacaatgacggCGATGGAGTTTGCCAAGAGCGCAAACAGATTTGGGGCCTGGAAAACCCTATACTCCATAACGGCATCACATCACTCCttaacactacactaccacaccacGCCTTCGATTGTGTATATTGGTgtagggtgaagtttcccctagacaCTGATCCTGGGTCGGTTTTGCatttttccccactaatggttaaggttaaaaTAGGGGGaggagaagctgatcctaggAAATTTCACCTCGTAGCCCTAAAATTACCACACCATGTCTTGTGTGTCTATGCATTCATCATTATTGTGTGTATTAAATGTTGTGTATAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1984914 lncRNA upstream 26914 36639473 ~ 36639697 (+) True G1733135
TU1984910 lncRNA upstream 33627 36632764 ~ 36632984 (+) True G1733131
TU1984895 lncRNA upstream 55765 36610616 ~ 36610846 (+) True G1733116
TU1984894 lncRNA upstream 56114 36610294 ~ 36610497 (+) True G1733115
TU1984831 lncRNA upstream 75732 36589563 ~ 36590879 (+) True G1733056
TU1984970 lncRNA downstream 377 36756989 ~ 36760221 (+) True G1733187
TU1984989 lncRNA downstream 33622 36790234 ~ 36795077 (+) True G1733206
TU1985007 lncRNA downstream 53676 36810288 ~ 36810676 (+) True G1733224
TU1985011 lncRNA downstream 58714 36815326 ~ 36815577 (+) True G1733228
TU1985044 lncRNA downstream 106817 36863429 ~ 36864198 (+) True G1733257
XM_021577638.2 mRNA upstream 78571 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 78571 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 208814 36426786 ~ 36457797 (+) False LOC110500329
XM_036957721.1 mRNA upstream 217622 36426172 ~ 36448989 (+) False LOC110500329
XM_036957719.1 mRNA upstream 217622 36426787 ~ 36448989 (+) True LOC110500329
XM_036957723.1 mRNA downstream 459593 37216205 ~ 37242873 (+) False htr2cl1
XM_036957729.1 mRNA downstream 491684 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 491685 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 491685 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 491686 37248298 ~ 37311240 (+) False zgc:109889
TU1984576 other upstream 430346 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 624123 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1182257 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 2797634 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 3344850 33321453 ~ 33321761 (+) True G1729465
TU1984969 other downstream 377 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 492015 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 614345 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 808816 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 1003723 37760335 ~ 37763258 (+) False cited1

Expression Profile