RNA id: XM_036957723.1


Basic Information

Item Value
RNA id XM_036957723.1
length 3664
RNA type mRNA
GC content 0.45
exon number 5
gene id htr2cl1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37216205 ~ 37242879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGGCCGGCACTCCTCATCCTGGTCATCATCGTGCTGACGGTGTGTGGAAACATCCTGGTCATCCTAGCTGTCTCATTGGAGAAAAAGCTTCAGAATGCCACCAACTTCTTCCTGAGGTCTCTGGCCGTGGCTGACATTCTGGTGGGGATACTAGTGATGCCTGTATCCCTCATCAACATACTCTATGACTATGCTTGGCCCCTGCCCAGTGCATTGTGTCCTATCTGGATCTACCTGGATGTTCTCTTCTCTACAGCCAGTATAATGCACTTGTGTGCTATATCTCTGGATCGATACGTGGCCATAAGAAATCCTATAGAGCACAGCCGTTTCAACTCCAGAACTAAAGCTATGATGAAGATAGCAGCTGTATGGACTATATCTATGGGAGTGTCAATGCCTATCCCGGTCATCGGCCTCCATAACAAGGACAAGGTGTTTGTTGACGGAAGCTGTGTCCTCAACGAGGAGCACTTCATGCTGATTGGCTCGTTCGTTGCCTTCTTCATCCCATTGGTCATCATGGTGGTGTCCTACTACCTAACCGTACAGGTCCTCCAGCGCCAGGCAACCGTCTTCCTCTACGAGGGGAAGACTCCCTCCCATCAGCCACTACACCCGCCACCCACGCCCTCATACCCCAGATCCCCGGCCCCAAACTTCCAAGTCCCACCCATAAACATTGAGGCTCCTCCTCCTAGCAGACAAGGGAGTCTGAGCTGCCAGAAAGGAGCAGAGCATGTCCGGCAGACCAGCCTCCTAAACACCTCCCCCTCAGAGGACATCAGCATAATTCCAAGTTCCGAGGTGGCATCCCAGCTGAGCTCGCCGGCGGGGCATGATCCACGGGACAGTATTGGGAGACGGGGGATGATGCAGGCCATCAAGAACGAGAGGCGAGCCTCCAAGGTGCTGGGGATTGTGTTCTTCCTCTTCCTGATCATGTGGTGTCCTTTCTTCATCACCAATGTCACATACGTCCTCTGCCAGGGTTCATGCAATGAGCCGCTATTAGCCGAGCTCCTCAACGTCTTCGTATGGGTGGGATATATATCCTCCGGAGTTAACCCTTTAGTATATACCTTGTTTAATAAGACATATAGAAGGGCGTTTTCCAGCTATATACGTTGCCAGTATAACACAGGGCCAAACGCCGGAGTTAGTAATAAGTCGCTTGCAGTTACGATGATGCCGTGTCCGTCACATGCCATCGTGCCCATATTTGGACATAATGGTGGGAATGGGAAGATGGGAAGTGTGGACCGGAATAGTAACTGTCGGAATGGTGGTGGAGGGGACCGGGCAGATGGGAATGGGATGATCAGAGGGATGGAACCTGTCGACCCCACAGATGGCAGGATGGGGATGGAGATTGAATGTCCCGGCATAATGTCGGAATTAAAACCCGGAATGTCGGAGCTGAAGCTTTCCGTCGACAGCTTCTGCCACGCCCAGGTGGAGCGCACCAGCAGCgtctgattggttgattggttaaTTGAATTATGGCAGCGCCGCGTCTCATTGGGTGACGATGGATGGACGGAATGGACATCTATTGTGATGCGTGCAAGAGAGGGGGACGATACTGGGTTTGTCTTATAGAGAGACAGTGGACACATCCACAGAGCACAGGGCCAAGGAAGGACCATAGAGATACTAGAAAGACCATCTCTTATCTGTAGATTGTGAAGCCCTCAGTGACTCTGTCCATGTTAAAGGTGGCATTGTGGCACAAGAGCCTTCTATCCAACTCTATGGGAAGGACTCATCTTGGCCTGGATGTAATAGAAAAGTACTTTTTCAATCTAGAAGAAGAAGCCATGAACAAGGCTGAACAGAGAGCGACTCAATACTTAAAATATACCCAAACTCAACTGTATTATGGATTTTAGTAACAGTTCAGCACCATGTTATAACTGGTTAGGACACTACATAAGAATGTAACAGGTCTGAATTGAGCTCTGCAGGTGTGTATAAAAAGGCCAATAATGGTTAATAGGTAGACTAGTAATGTTGAATGGAGAGAGGAATGTAACTGAACACAATATAGCCCCAGTGATAGTGTCATAGCTCCACCTTCTGGTGTCTGTATGAATgcatgaaataaatcatttccaAGAGGGTCGGTGAATGAAGGGGTTGGAAACACTGTGTACAGTGgatctctctcacacatcatAATGTATCACCTCACTCAGATTCACACAGCATTCTTTGAGAAGATCAGTAACAGTCAAGTTAAGGATGAACAGCAGTGCAGGTCCCGAAGGGCTGCAGTGTGCGCATGCTTTTGTCTCACACAGCCAACCTAACTTCACAAGAAGATAATCCCCCTTCTGTCATCTTTACAACCATAGCTATGACCATAACTCAACCATAACCATAGTCTATAGCCCTATCATAGAACAAaccaaatgtacagtatgttagtaaTCCTTCAGGCCTATACAGTATATCCCACTCTGACCTACATCCAAAATTATTCCTACAACCCATAATCAAACGCTGCAACAACCACAACCAAAACACCAGAGCACCTGAATGAATGTATATATGACAACCTCTGACCCCTCTACACAGGTCAAAGTTCAAAGGTCAAAAACGCATCAATTCATTCACTATGATGTCAAGTTCTCTCTTACATAAGGAAGATTGAACAGAAGGTCTAAGCGATCGTCGCTAGTAATTTTGGAGCTTTTATCAGACAAAAAAGATAACGTTGAAAAGacgttgaaaataagtattttgggTTGAAAAGGTGGGTTGCTACAGGCCCATTGACGTGTTTGACATAAAGTCTGACAAAAACATTAAACTAAAAGAATGAAAAGTACTGCAGAGAGGACGGGCGCCTGATCCGAAATCAGTTTGCTTTCCGATTGAGGAGCGAAGTCAAGAAGGTATCTGAAACAATTAATTTTAAGCTGTATATGTTAGCCATAACTGTGTGTGAGTAAAATATAGCTGTTTCTGGTGTAGGGGAATTAGTGCTTCTTGCTAGCACTGAGCTTTCCCTTGTCAGCGTTAGCAAGCCATGCTAATGCTGGGTTTATGACATCTCTTAACTGTGAGCATACAACTGGGAAAAATCCAATTGAACCCCCCTCCAACTCGGAATTACTAGTGGGATACTCATCTCTCATCCCTGTGCCCACACGACATCTCCCACATGCTGAGTTCTGTTATCACCTACTAAGAAAATGACCTTGATAACAGCAGTTAAATGCAAATAGACATAAACATAATGTATTGTATTTATATGGTTTTTTAACACTGTCATTTGTTTACGagcatgatagctgtacttttagtttatggttgacgCAGATTGTTTACCATTCACCAATCGGCATTCTCAATGAGTTCAAAGCATGTAAATGCACACAACTTGTTGCTCCCAGTTTACAGTACAAGTTGTATTTTCCAAGTTTCCCACTTGTCATAAACGCGGCATAATGCCCTGGTCCATAGCTAAAGATATTTTGTGTTATTATTCCATTCCattacaatcaatcaatcaatcaccggTTTTCATTCCATTTACTTGTGAATGTTTGTCAATGACACTTCTCACGTTTTGACTATTTCAATCATCCACAAGACAGTGTTGTTTTTTTCTGTGTGATGCtgctatttatttattattaaaacGTCATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986110 lncRNA upstream 15780 37200186 ~ 37200425 (+) True G1734232
TU1986105 lncRNA upstream 19260 37196613 ~ 37196945 (+) True G1734227
TU1986083 lncRNA upstream 33583 37182405 ~ 37182622 (+) True G1734205
TU1986079 lncRNA upstream 36088 37179901 ~ 37180117 (+) True G1734201
TU1986075 lncRNA upstream 37144 37178776 ~ 37179061 (+) True G1734197
TU1986142 lncRNA downstream 65900 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA downstream 65900 37308773 ~ 37314293 (+) True zgc:109889
TU1986303 lncRNA downstream 115304 37358177 ~ 37358655 (+) True G1734411
TU1986320 lncRNA downstream 133756 37376629 ~ 37376859 (+) True G1734424
TU1986321 lncRNA downstream 134084 37376957 ~ 37377281 (+) True G1734425
XM_036956504.1 mRNA upstream 459593 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 628165 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 628165 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 758408 36426786 ~ 36457797 (+) False LOC110500329
XM_036957719.1 mRNA upstream 767216 36426787 ~ 36448989 (+) True LOC110500329
XM_036957729.1 mRNA downstream 5423 37248296 ~ 37311240 (+) False zgc:109889
XM_036957725.1 mRNA downstream 5424 37248297 ~ 37311240 (+) False zgc:109889
XM_036957728.1 mRNA downstream 5424 37248297 ~ 37311240 (+) False zgc:109889
XM_036957724.1 mRNA downstream 5425 37248298 ~ 37311240 (+) False zgc:109889
XM_036957726.1 mRNA downstream 5427 37248300 ~ 37311240 (+) False zgc:109889
TU1984969 other upstream 457322 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 979940 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1173717 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1731851 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3347228 33710092 ~ 33868977 (+) False LOC110500285
TU1986149 other downstream 5754 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 128084 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 322555 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 517462 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 800218 38043091 ~ 38045066 (+) False G1734960

Expression Profile