RNA id: XM_036957725.1


Basic Information

Item Value
RNA id XM_036957725.1
length 2690
RNA type mRNA
GC content 0.54
exon number 12
gene id zgc:109889
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37248296 ~ 37314293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctcagttggtcaggtgtggtgcctagtttgaacaaaatcctgcagtactccaggaacagggttgccttCCCCTGCTATAGTTTGAGCATTCGGCTTGCTTTACATTCCTCGTAAATAGGCCTAAAGAGGAAGGGAGTAACACAAATATATTTATTGCACCTCGCGGTACAGTAAAACGTAACCGCGAGAGAAGCAGGGAGCGCTTGCTCATCTCTGTTAACTCGCTCGAGGCTATTAACAAGGGGTCGGTCCGTCAAGTCTCCGCTCATCTTGGTTTTCAGTGACACGCATGCGCACTAACAGGTCTCTGGAATCTGATGCAGCTCGCAGTACAGGCTGAGTCGCTGCCTTGGTAACGCCACACATGCGGAGCACGAACTGGGGACCCAGATTTCCAGATTTCAGAGGCTTcttcctccactcttctcctccaTCCATTCCTCCCATCAGCAGTCAACTGGGCGGCTGTGCCACCACTGATATGGACCCACGGAAATGCAGACAAGGCTGAAAAAGAGAGTGAAAAAGAAGAAAATAACTTGAAGCGGCGCACAGGCAGctctctctccatctcttcccccagGTGAATCACCATGCCATTGgTAAACCATGCCATTGGTAAAACGCAGTATAGAGCCTAGACACCTGTGTCGAGGTGCAGTACCTGATGGAGTCACCAGTGAACTGGAGTGTGTTACCAATAGCACCCTCGCTGCCATCATCAAACAGCTTGGTAGCctcaGTCGTCATGCGGAGGACATCTTTGGAGAACTGTTCAATGAAGCCAACAGCTTCTACATGAGAATGAACAACCTACAGGAGAGAGTAGACATACTGGCTGTCAAAGTCACACAGCTAGACTCCACCGTGGAAGAAGTCTCTCTGCAGGACATCAACATGCGTAAAGCGTTTAAGAGCAGCACCATCCAAGACCAACAGGTGGTCTCACGGACCTCAGTCCCCAACCCTGTGGTAGAGATGTACCATCGCTGTGACAAACCTCCACCGCTCAACATACTCAGTACCTATAGggATGATAAGAAGGATGCGTTGAAGTTCTACACAGACCCCTCCTACTTCTTCATGCTGTGGAAAGAAAAGATGCTGCAGGCCACGGAGGacaagaggaaggagaagagacgACAGAAgACCAGCTGTCCGACCCACTCTGACCAGGGTAGACCCCACAGCAGACAGGCTCCACCTCGCAGCCCACTACCCAGCTCCGAGCAGCACAAACAGGTAGAGGACCCGGGAAGGGAGGTGAAGAAGGTTCGTAAAGCCCGTAATCGCAGACAGGAGTGGAATATGATGGCTTATGACAAGGAGTTCCGACCCGATACCAGACTAACCCCCTCACCCTATCACGGAATGTCCTCCGAGGGGTCGCTATCACCCGATAACAGgtcTGTGGCATCAGACATGGGCGAGCTCTCCTACCCGTCCAGCCCTAACCACCCCTCCCAGCCCCCCTCCGCCCCCCACCCCATCGACGGTGTCCCCCACCTCACCCAGACACCACAGACCCAGTCCTTAGACAGGGGTGGGTACCCCCGACCTAATCTCCCCTCTGGTGTAGTCGCTGGGGGAAGACATATCGCCTCTCTGGGGCGCACTCAGCTCCCCCACGCACCCCCCGCCTCCTCTGAGGGGGGAGCACTCAATGGGCCACGGCAGCAGTCTGTCAAGGACTACAGGGCATATGGCGGCCAGCCATCAGCCATCCCCGAGTACTTCACCccccctgcccctccccctcccccacccctcatCCCGTCCGCCCAGACTGCCTTcgactccacctcctcctcctcccccattctCCCCCCCGGGGCCGTGGTGGTCATGTCCCGCCCTTACAGTCCCTCCCCTACTCCCCCCGCCCCCCCTGCCAACTAtgtcccctccccctctcacaccCCCTCCGGTGCCCCTCCcgctgccccccctcctcccccacctggTCTACCCCCCTCCCATATCCTGCCTCTGGCTCACGCCATTGGTGGAGAAGCTCCTGCCACCAGGAAGGGCCAGATGCCGATGATTCCGATAAGCGACGCTCGCAGCGACCTGTTGGCTGCCATACGTAGAGgtGTGCTTCCGATCAGCAATGCTCGCAGTGAACTGCTAGCAGCCATACGCAGAGGTATCCAGTTGAGGAAGGTccaggaacagagagagcaggaagCAAAGAGAGAGCCAGTTGGAAACGACGTGGCCACCATCCTATCACGTCGCATCGCCGTTGAGTACAGTGAATCAGATTCCGACTCCGGCGGGGAGGACAACGGGGAGTGGTCCGACTGAAATGGGTCAGGTGTCAATAGGTTAAAGGGGACAAGTGGAGGTGCTTGTGAGGAAAGGGTGTTCAAAACTTTATTCAAAATTATTGTTAAGTGTTGCCCACCACACACATATAGACTTTAAAGGGATAGACCAACCACCAACCTACCTAACTTCCCCACTCTAGCACATTGTTGTGTGCTTGAGTAGTATTGCTAAACACACTACATTACTTCTACTCAAGCACTATAACACAATCAATGAAGCAATGCTAtagtagaggactacagtacataccagtgtgcagtcgtggccaaaagtttgggaatgacacaaatattaatttccacaaagtctgctgcctcagtttgtatgatggcaatttgcatatactccagaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986112 lncRNA upstream 5418 37241356 ~ 37242879 (+) True htr2cl1
TU1986110 lncRNA upstream 47872 37200186 ~ 37200425 (+) True G1734232
TU1986105 lncRNA upstream 51352 37196613 ~ 37196945 (+) True G1734227
TU1986083 lncRNA upstream 65675 37182405 ~ 37182622 (+) True G1734205
TU1986079 lncRNA upstream 68180 37179901 ~ 37180117 (+) True G1734201
TU1986303 lncRNA downstream 46937 37358177 ~ 37358655 (+) True G1734411
TU1986320 lncRNA downstream 65389 37376629 ~ 37376859 (+) True G1734424
TU1986321 lncRNA downstream 65717 37376957 ~ 37377281 (+) True G1734425
TU1986323 lncRNA downstream 81265 37392505 ~ 37392720 (+) True G1734427
TU1986331 lncRNA downstream 95329 37406569 ~ 37406822 (+) True G1734435
XM_036957723.1 mRNA upstream 5424 37216205 ~ 37242873 (+) False htr2cl1
XM_036956504.1 mRNA upstream 491685 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 660257 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 660257 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957719.1 mRNA upstream 799308 36426787 ~ 36448989 (+) True LOC110500329
XM_036957730.1 mRNA downstream 119556 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA downstream 119577 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA downstream 119944 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA downstream 173391 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_021577614.2 mRNA downstream 338262 37649502 ~ 37656152 (+) False LOC110500311
TU1984969 other upstream 489414 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1012032 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1205809 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1763943 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3379320 33710092 ~ 33868977 (+) False LOC110500285
TU1986313 other downstream 59717 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 254188 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 449095 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 731851 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 733868 38045108 ~ 38046506 (+) True G1734961

Expression Profile