RNA id: TU1986149



Basic Information


Item Value
RNA id TU1986149
length 1047
RNA type TUCP
GC content 0.47
exon number 2
gene id zgc:109889
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37248296 ~ 37314293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTACAGGCTGAGTCGCTGCCTTGGTAACGCCACACATGCGGAGCACGAACTGGGGACCCAGATTTCCAGATTTCAGAGGCTTcttcctccactcttctcctccaTCCATTCCTCCCATCAGCAGTCAACTGGGCGGCTGTGCCACCACTGATATGGACCCACGGAAATGCAGACAAGGCTGAAAAAGAGAGTGAAAAAGAAGAAAATAACTTGAAGCGGCGCACAGGCAGgtggcgacacgcatctctgcgtgcctggcagatatctcagcttggatgtcggcccaccacctcaagcttgACCTCAACAAGACGGCGCTGTTCTTCCTCCCGAGGAAGGCCTGCCctctccaagacctctccatcacggttgacaactccagtgTCCCCTTCCCCGAGTGCAAGGAACCTTGGCATGAGACTCTGCAAAAATCAAAGCAGTGTCTCGCTCACATAGGAAGTGGCGCAGTTCCTAacccaggcacttgtcatctcccgtctggactactgcaactcactgttggctgggctccccgcttgtgccatcaaacccctgcaacttatccagaacacaAGCccggtgttcaaccttcccaagttctgcAATGTCACTGCGCTCCTCTGCACATTCTATTGGtttccagtcgaagctcgcaaccactacaagaccatggtactcgcctacggagcagcaagaggaactgcccctgtttttgctgactttactgtagtattcactgtttTTGTGGACTAcacatactgtagtatttacagtttactatagtacaaatactgtagtaaaaaagACTGGTTTATATAAATTACTGTAGCGATTTCGCAGAATGTAGTAttctgttgtgtttttttttgtgtgtgttgtatttgACAATAAAATTGGGGGCTTTTACCTTGAGGAAACCTAATAGAGAAATGTTATGGACTGGGTTATGAATGGAGAGTTTAGAGCAATTGCTTTTTTATATAACCTGTATagaacacaatatatggtctatacttggcatgtacgTTTCTTACTTATGAGTGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1986112 lncRNA upstream 5748 37241356 ~ 37242879 (+) True htr2cl1
TU1986110 lncRNA upstream 48202 37200186 ~ 37200425 (+) True G1734232
TU1986105 lncRNA upstream 51682 37196613 ~ 37196945 (+) True G1734227
TU1986083 lncRNA upstream 66005 37182405 ~ 37182622 (+) True G1734205
TU1986079 lncRNA upstream 68510 37179901 ~ 37180117 (+) True G1734201
TU1986142 lncRNA downstream 56598 37308773 ~ 37314293 (+) False zgc:109889
TU1986143 lncRNA downstream 56598 37308773 ~ 37314293 (+) True zgc:109889
TU1986303 lncRNA downstream 106002 37358177 ~ 37358655 (+) True G1734411
TU1986320 lncRNA downstream 124454 37376629 ~ 37376859 (+) True G1734424
TU1986321 lncRNA downstream 124782 37376957 ~ 37377281 (+) True G1734425
XM_036957723.1 mRNA upstream 5754 37216205 ~ 37242873 (+) False htr2cl1
XM_036956504.1 mRNA upstream 492015 36666611 ~ 36756612 (+) True LOC110500825
XM_021577638.2 mRNA upstream 660587 36523371 ~ 36588040 (+) False si:dkey-183c6.8
XM_021577637.2 mRNA upstream 660587 36523376 ~ 36588040 (+) True si:dkey-183c6.8
XM_036957715.1 mRNA upstream 790830 36426786 ~ 36457797 (+) False LOC110500329
XM_036957730.1 mRNA downstream 178621 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA downstream 178642 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA downstream 179009 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA downstream 232456 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_021577614.2 mRNA downstream 397327 37649502 ~ 37656152 (+) False LOC110500311
TU1984969 other upstream 489744 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1012362 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1206139 36041331 ~ 36042488 (+) True G1732735
TU1983724 other upstream 1764273 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 3379650 33710092 ~ 33868977 (+) False LOC110500285
TU1986313 other downstream 118782 37370957 ~ 37371667 (+) True G1734420
TU1986376 other downstream 313253 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 508160 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 790916 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 792933 38045108 ~ 38046506 (+) True G1734961

Expression Profile