RNA id: XM_036957731.1


Basic Information

Item Value
RNA id XM_036957731.1
length 6772
RNA type mRNA
GC content 0.45
exon number 30
gene id si:dkey-172j4.3
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37430796 ~ 37537824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATCCGTGTTTTGTGCCAGTCTCCGTCGTTATTAACGATCCCATTCGCAATGGAATGAATGATCAAACGTTGTCGCTCGTGAGCCGCCAGCTCTAAAAGGTAGAAAGAAGCCCTGGCGACGCGCTACTTACTGCCTGTTGTTCCAAAGACAAAATAACTGAAGGTTACAAAACAATCGGTTTATTTTTTAACGTTTTCGTCTCAAAAGAAATAGCCTTATAAACGCATAGCGCTACTGTATCGTCATATGATTTGAAATCATACTGCCCTTTGACAACTGTAGACTAGATGGGGAGGTCGGTCGTTGTGTAGTAGCAACACGTCGGTTAAATTCAGAGAGCTGAAACCAAGGAAACAGGACACACACTTGAGACACATGATGACAGTCAGGTGTTCTGTTAGCAACCACTCGACCTGCAGAGGATCGAGGCTACATTAGATCAACGGACGAAGTGTAAAGATTGAAGTCTGGTCACGCACATCACgtcccatcttctcctctcctccttttcccaaGTCCGTTCCTTCAAACAATCACCATCATGGCTTCCAAACTAAACCCGAATGTTTTGTACGTCCAAGAACTACGGGAGTCGACGTCTTCACAGGAATCTGACCGCCTAGCACCGCCCGAACCCGGGGAAGAGAGCTCGGATAGCGACGGAGAGACGGACGAGACGGAGCAGAAGCTGATCCGGAAAGTGTCCACGTCAGGACAGTTACGTGCCAagAAAAGTGTAAAGGAAGGGATCCTATTGAAACAGACCAGTTCTTTccagagatggaagaggaggtaCTTCAAACTGAGAGGCCGGACACTTTACTATGCCAAAGACTCCAAGTCTCTGATATTTGACGAGGTGGACCTATCAGACGCCAGCGTGGCCGAGACCAGTACCAAGAACATCAACAACAGCTTCACGgtgatCACTCCATTCAGGAAGTTGATGCTGTGTGCTGAGAGCAGGAAGGAGATGGAGGATTGGATCGGTGCTCTGAAGTCTGTACAGAAATGGGAAACGTATGAGgccagtctattcaatatggaacatttttcTGGGATGCATAACTGGTACGCCTGCTCCCACGCCAGACCCACCTTCTGTAATGTGTGTAGAGAGGCCCTCTCCGGAGTCACCTCCCATGGACTGTCCTgcgaagtgtGTAAATTCAAAGCCCATAAGCGATGTGCGGTGCGCTCCACCAACACCTGTAAATGGACCACGCTGGCCTCCATAGGAAatgacatcatggaggacgacGAAGGGGTCTCCATGCCTCATCAGTGGTTAGAGGGCAACCTACCGGTCAGTGcaaagtgtgtggtgtgtgacaaGAACTGTGGCAGTGTCAGGAGACTGCAGGACTGGAGATGTCTGTGGTGCAAGGCTATTgtgcaCAGCAGCTGTAAGGAGCAGATGGGAAAGGCGTGTCCTCTGGGTCAATGTCGGGTGTCAATCATCCCTCCCACAACCCTCAATAGTATCGACTCTGACGgcttttggaaggccacctctccctcctgcacctctcctctcctggtgctGTGTAACTCTAAGAGCGGAGACAACCAAGGGGTTAAGTTTCTAAGGAAATTCAAACAGCTGCTCAACCCTGCACAGGTCTTTGACTTGATGAACGGAGGACCACAGCTGGGTCTGCGTGTGTTCCAGAAGTTTGCTACGTTTCGTATCTTGGTGTGTGGCGGGGACGGTAGTGTTGGCTGGGTCCTGTCTGAACTGGATAAACTCAACCTGCACAAACAATGTCAGCTAGGGGTCCTCCCTCTGGGTACAGGTAATGACCTAGCCAGGGTGCTGGGATGGGGAGGACTATGTGATGATGATGCTCAACTGCTACAGATCCTGGAGAAGCTGGAGAGAGCAACCACCAAGATGCTTGACAGGTGGAGTGTGATGACATACGAGCTGCCTACCAAACACTATCCCATGGTGAAGGAAGACGATTTTAGTCCCGACTCCCCCTTGCAGGTTCACATCACTCAGTATGCAGACTCTGTGGCCTCCCACCTCACCAAGATCCTGGACTCTGACAAACATATGGACGTCATATCCTCTGCCAAGTTTTTGTGTGGAACGGTAAATGATTTTGTAGCGGAGGTGGGGAGAGCATACGAGAGAGCTACAGAGAACAAGGAGGAGGCAGACGCTATGGccaagaagtgtgccCTGTTGAATGAGAAACTGGACAGTCTGGTGAAGGCTCTGAGTGAGGAGGCTGATGCCCAGGTGGTCCCAGCCGGCAGTGTGCCACCCCAGGATGGGGACCAGGAGAGGGGTACAGACACTACCGGAGGGGAACCCCGTCCCCCATACAGGTCCAGAGAACAGCTGATGCTGAGAGCTAACAGTCTGAAGAAAGCACTGAGACAGATAATAGAACAGGCTGAGAaagtggtggATGAACAGAATAAACACACTCATCTCCAGCGcatgtcttcctcctcctccatcaagagagagaacagtgaggaaCTGAAAGAGGCAGAGCCACGTCACGTCAGTTTaagcccctcttcctcctcctccaccattgTCCTGGAGAAACCCGAGAGTCTCAGCCCTCCGTCTTTCAACGAAGATCAGTGCTCAGAGAAGTGTGTAATGAACAACTACTTTGGGATCGGTCTGGATGCTAAGATCTCCCTGGAGTTCAACAACAAGAGAGATGAACATCCCAAGAAATGCAGtAGTCGTACTAAGAACAAGTTGTGGTATGGAGTGATGGGCACCAAGGAACTGGTACATAAGACATACAAGAATCTGGAACAACGAGTACTGTTGGAAtgtgatGGTGTACCTATGTGTCTGCCTAGTCTTCAGGGTCTAGCTGTTCTCAACATCCCGAGCTATGCGGGGGGAATCAACTTCTGGGGGGGAACCAAAGAGGACAACAATTTTGGCGCTCCGTCGTTTGATGATAAGAAGTTAGAGGTGGTGGCTGTGTTTGGCAGTATGCAGATGGCTGTATCCAGAGTCATCAACATCCAACACCACCGCATAGCACAGtgtcGTCAGGTGAAGATAACTATCCTAGGGGAggagggtgtaccagtacaggtGGATGGAGAAGCATGGATCCAACCTCCAGGGATAGTCAAGATCACACACAAGAACAGAGCTCAGATGCTCACCAGAGACAGGAACTTTGAGAGGACTCTAACATCATGGGAGGATAAGAGGAAGATTGACACCTACCGTTCCTCCAGGCCCCGCCTCAACTCTCAGCAGTCTATGGAATACCTCACAGAGGAGGAATGTGCTCAAGTACAGCAACTAGGGATGGTGGCAGACACACTCATCACTAGGATAAGAGAGGCAGCTAAGACCCACAAACTGGTAGAACAGGAGTTAGCCCATGCTGTCAATGCTAGTGCCATGGTCCTCACTGAAGCATTCCCCTCCAAACCATCCAGCCCTGAGTGTCTGAGTCGCAGTACAGCAGTGGAGATTGTGAACAGCAGTAAAGTCCTTCAGCTGGAGACCAGGATGCTGCTGGAGGGAAAACTACTGCTGGACTCTCCCCAGGAAGAGGACCTTCTCTCTACTCTCAACTCTCTGAGTGCTGAACTCCACAAGCTAGATGATATACACTGGATCTGCCCTGCCATGCACTGCTCAGAGGAAgtggatgACTCTGTGAGAGTGAGTGGTAAGAGTAGCATGAAGCTAAAGATGATGCCCAaggtgaggaaggagagagagaagctccACAAGCAGATGTCCAACAGCTCTCTGTCAGgaTCTTGGGATATTAAAGGTGGGGCATGTGAGACGGATCCTTCAGGCAATTGAGGAACTTAACGAGGAGGCTTAAGAAGACAGCTGTCACTATGGCAACCGGAGGGGGGATAAATTATTCAACAATTCAATGACCCTCCCCATTCAGCTATCACCTCCCCCTTGATTCAATGTTCTCCATTTTGTAATCAGGGAGGAGTTGTTTTTAACGAGGGGGCGTAACTTTGCATTGCATCACCGTTTGGTGTGCTGTTTGACCTGCTGACCAGAGATGTGGGCGTGTTCTTCTTGATAGTCAAAGTGGCCAATCAGAGATGAGGAAAGAGTTTCTAAGCATATTTTGTTTAATTGACAACGCAATGTGTTTACATAGGCGGTGCTGTCCTTTGCATGACGGGAGGGGACATTTTGTTTTTATTCTTAGATATATCCTCTTTTTGGGGTTTAGGCTAGCCTTCCTCTTTTCGCTCTTGACTTTCGGGACTTTTTAGTTTCCTCGAAATCTGAAGTTTGAGGACATCTTTGTTGGAGGACATCAACAATAACAAAAAACACCTCAACTTATTCTCACCTGAGGAACTGGAGACTTAAAAATGTGAAAAAGTTTTTATTGAAGGTTCATATTGAGGAATGTAATACATGTGGACAGAATATGGTACTAATATATTGGCCTTGCTAAAGTACTTACCATAATATCTGTAATATATGTACTGTAGCATCTTATGTCCAGCTACTACAGTACTCACTGTAATATCTACGGCTAGctactacagtacttactgtaACATCTAAACCACGATGACCTCAATGTGTCCCTGCATGCCTTCCAAGTTGGATGAAGTAGCCCATTGACACTGATCTAAGATCCGTCTAAGGTTTGCATTATCCCTCCTTGTGGTTATGCTTAGGTTTCGAGGAGGGAAAGTTGATCCTACGTCTGTGGTTAGGGATATACTTATACCATCCCTTACCCCTACGCTGGAATATAAATTCAGTGAGATTTCTTGTATTTTTCCGTTGGAGAAATTGAGTAACATTTTATTTTGAAGGTCTGGTTATAAACAGCTTATAAACTGTTAAGATAGTTCATGTATAGTTTAACTGTTAGTTAACCACTATATCGTTCTATATATTTTATTCATGCTTTAATGAATAGCAGTAGTTTCGGatgaaaataatatatattacAAAGACCAGTATGCCGAGTCATATATAGTTAAACCATGAACAAGAGATAAGTTAAGTTGTCATTAAGTTAAAATAACATGTATTTAATTCATTCAATGCAGAACAAGCTATGTGTTAGTCATTTAATAGTTAAGTAATGGTGTTTATTATCAGCTTATTATCAGCCTTCCAGATAAAGTGTTAGCTTGTCCTACTGTACCAATAGCGTGCTTGTCCTGCTGTTATTGCTATAGGCTTTAGTGATGTACCTGTACACGTGTGCCAAGTTTTAAACGACATATgacgattgtgtgtgtgtgtgtgtgcaaacgaCACTGTGTGCGTGTCATTCATTTCAAAGTTTACTGTACCTTGCCTTGCACTTTACAGAGAGAAACTCAAAAGAAAAAATGTGTGTGCGAGCGACGTGTGCGTGTCTGTTGTAAAAGTGATCGTTCACTTGTGTTTTTATTGCTATGGAAACGGTCGCTCTCCCTTGTATTTATGACACATCTATACAGAGATCAGTGTGTGTTAATATGTAACATATAAATATAACCAACAAGAATGTTaaagtatattatatatacataataGATATTAAATGTTTATTCACTTGTCAGGGGTTGTTCTACTGTACATGCTCTCAGGGTGGCAAAATTCCAGTAATTTCTTCTAAATTACCAGGTTTCAAGAAATCCCGTTGGAACATTTACGGATTTTCAGAAGTGAATACGCAGGAAACCcaggaattttgggaaagtttaCAGAATTTTTCAACCCTAATGTTCTCACTTTACACATCCTAATCTCATGGAAGActgtattctgaaaaatgttgCGACACCGTTACTCCAACGCTATGCCAACGATTCCTTAGCGGCTGTTGTTGTGTCTATGGCACGACGCTAGGATATCAGTATTGAAATCTTGTGTGACATAACATATATAGTGGTCAATCGCCAAGGTACTGAGAGGTAATGGAGAACAATGCAACAACGACTTAACGATCAAGTCAAGAGGAACATTTTTGGAAACGTTGTAATATGCCACGGTTGTGTAACAGTATTTGACGGCAAGTTTTTGTGAACGCACGCCTACAGACCGCACTGGCTGGACTCTGCTGTGCAATGCGCAAAGCTGGACTCGATGTTGCACGTTGTTTGTTCAAAGatgtttaataataataatcttgtGCTGTTAATTCGTTGTACTGGTTGATCTCTGTAACCAGGCTGGAAGGTCAGCCTTTGGGCCTAAAAAGTATTCCTTGAAGTCCTAAGTGTCAAGATGTTGTATATTATACTATTTAATGGTATCAATTGATAAGGAGGATGTTATTGTGATTCAAATCTTGAATGTAATCTTGAATTGTGATCAAATCTTGAATTGTGAATCTTTGAACTCATCATGTATTGAACTTGATTGAGTGTTCCCAAATAGATATACATTATGCTCCATCTCAGCTCAGAGCCAAACTGTTATTTTGACAGTTTACTCGACATAGATGTTTGCTGCCAATAAGACAGGAATCATGCAGGCTATGATTTTACTGTTTTACTGCATATGATTGATTATCATCAGTGAATTTAGGCCGGATTACAATCAAAGGCGCGTTGTCGAAAAGCATACTGCACTTGACTTTAAAAGGTAATTTATGCTTCAGCCAATATCAAGCGTGCTGCGCCCTTCGCGACAGCAGGCCTTCGATTGAATTCAGGCCCAAGCCTATTTATTTGTGCTATCCAATTGCCAATGATCCATGTCCcagaacccagagagagagacagcattcACTGGCTGCTAGCAGGAGGCTGAAATAAAGTGTATCCATGGCTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986331 lncRNA upstream 24362 37406569 ~ 37406822 (+) True G1734435
TU1986323 lncRNA upstream 38464 37392505 ~ 37392720 (+) True G1734427
TU1986321 lncRNA upstream 53903 37376957 ~ 37377281 (+) True G1734425
TU1986320 lncRNA upstream 54325 37376629 ~ 37376859 (+) True G1734424
TU1986303 lncRNA upstream 72529 37358177 ~ 37358655 (+) True G1734411
TU1986373 lncRNA downstream 7325 37545149 ~ 37550449 (+) False G1734477
TU1986374 lncRNA downstream 7325 37545149 ~ 37550449 (+) True G1734477
TU1986375 lncRNA downstream 14293 37552117 ~ 37553314 (+) True G1734478
TU1986447 lncRNA downstream 76754 37614578 ~ 37614813 (+) True G1734548
TU1986449 lncRNA downstream 82123 37619947 ~ 37620381 (+) True G1734550
XM_036957729.1 mRNA upstream 119944 37248296 ~ 37311240 (+) False zgc:109889
XM_021577614.2 mRNA downstream 111678 37649502 ~ 37656152 (+) False LOC110500311
XR_002470081.2 mRNA downstream 163617 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 183294 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 220935 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 228830 37766654 ~ 37772954 (+) True rs4x
TU1986313 other upstream 59517 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 179009 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 672301 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1194919 36233122 ~ 36236265 (+) True LOC110500325
TU1984485 other upstream 1388696 36041331 ~ 36042488 (+) True G1732735
TU1986376 other downstream 27604 37565428 ~ 37568953 (+) True G1734479
TU1986710 other downstream 222511 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 505267 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 507284 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 539727 38077551 ~ 38082274 (+) True LOC110500301

Expression Profile