RNA id: XM_021577614.2


Basic Information

Item Value
RNA id XM_021577614.2
length 3605
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110500311
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37649502 ~ 37656769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATGCAGGCTGGGCGGTGGAATGAGTCAGGGTCTGTGATGGTGCTGCTCGCGCAATTTCATCAGCGGCAACATTTATTTCATTTAGCTTCCTACAAAAACACAAAACGAGATAAGGAGAGGAGTGAAAACAAAATTAACCTTCAGAATTTTTGCCATAGGTCTATCACATTTTACAGTTGTGTGATTTCAAAACAACAGTGTAGACCTAGGCTATCATTCACAAATGATAGCATTCTGGGGAGTAAAGCGTGCTTTGAATTTTTTTAGGGAGTCATTAATAGACCGTTATAAAGACATCACAACGAAGACCCGTTGGTAGAATTCCGCAGGGCAATTGTAAACTGCTGTTCATGCGTTGATGTGAGACGTTCTTTCGGGCGTTTGTTCTACGAAAGCTTCTCAATGCAATGGAACCTGCAGCAATCGGGTTCTGAGCCGCGCAACCAAACCACAAGCTAGACAGCAGTCACCATGGAGGCGATATGGTTGTACCAGTTCAGACTCATCGTCATTGGGGACTCGACGGTGGGGAAATCGTGCCTGATCCGGCGGTTCACGGAGGGAAGGTTTGCCCAGGTGAGTGACCCGACGGTCGGCGTGGATTTCTTCTCTCGCCTGGTGGAGATCGAGCCGGGGAAACGCATCAAGCTACAGATCTGGGATACCGCGGGACAGGAGCGCTTcagGTCCATCACCAGAGCCTACTATCGTAACTCGGTGGGCGGGCTCCTCCTGTTTGACATCACAAACCGCCGTTCCTTCCAGAATGTTCATGATTGGCTAGAGGAGGCCCGGAGCCACGTACAACCACACAGCATTGTGTTCCTATTGGTCGGCCACAAGTGTGACCTGGAACCTCAGCGCCAGGTAACTCGTCAGGAGGCTGAGAAACTCGCCGGCGCCTACGGGATGCGTTACGTAGAAACTTCGGCCCGCGACGCCATAAACGTGGAGCACGCCTTCACGGAGCTGACCAGGGACATCTTTCAGCTGGTGAGGAGCGGTGACATCACTATCCAGGAGGGTTGGGAGGGGGTGAAGAGCGGCTTCGTTCCCAACGTGGTCCACTCCTCCGAGGAGGTCACCAAGAGCGACCGACGCTGCCTCTGCTGATCTAGAGGGATCTACTAGATCCAACTAGATCCCTGACTCGAGTCTGGTTTCCCTTAGGTCCTCCTGAACTTGCACCCAGATCAATTTCAGCTATCTAGTCTAGCCATTTGCCTCTACTGATCTGCATCTGGATGGAGGGATCCTACTCACAACTAGATCCCTGCCTGGTTTTCATTTGATCCTCCTTGGTCCTCAAAAGGTGTCCACTTTTCAGAGTGATCTGCTATCTGGATGGATGATGGATCCCTTCCCTACAAatacctggttaatacctggTTTCCCTTTAGGTCAGGGATGGGGATCTTGGATGGGGGTGGGGGacacaaaaaatctgaactcatcatgaggggccgcagtggctcacgggtctgtgtacccacatctatacccacacctGTCTCTGATTTGTACAATCAATCTATTTGTGCAGTTAAACTACTTAACTCTTAACTAAATGCATTATACCAGTAGCTAGGGGCATCTCTAGCCTTTTGGTGGCGTTAAGCAAGACTTGGTTGGCATCCCCCTACCTCACAGGTAAAACATTTTACTGGCCCCCGTCTTGACGGTGGAGAGAAAaaagtacatttcctgcaattctacacattttgccatggtgcgGAGGGAAATGGTGTGCCATTTTATAACAAATTTCaagcaattctactcattttgccatgaggcagagagaagaatttgcagttttacagctattttcctgcaattctatccaTTTTGCCATGGAGTGGAGATACATTGTTGTAGTTTTAAAACTAATTTCCTGAAAATCTACACatttttgccatgacttatgccatgttaatatgatatatgagtgagagtgactaacaaaatcaattggTCCCCCCTGGAGGTCAAGGCCTCTGGGCATGTCTGGTCactattcggccatgattactacaagtaaaacatttaaaaaaaataattgttagCTGACATAGCTAATTGAGTGAGTGACTTAAGAGAAAacctgctgatgcacaaccataTTTCAAAACTGCACCTTGTgaattctactattctaactcccaacagtaagttgagaccctgactgagtTGCTAAACATGGCCCATCCCTGCTTTAGGAAATGTTCTTGAATTGCACCCAGATCTATTTCAGCTCTCTAGTCACCTGCTACCCCGATCTATTCTCTTCCACTATGCAATCCGATAACACAATTGATACGACCAGAAGGCATCACACGTCCCCTTAGAAGGCCATATTGACCCTATCTGATTCAGTTGTTCAAAGGAGACTGAGGAGGAGGGTCTCAGAGTCTCTTACTTTCCCCTTTTGGGAAATGAAGTCTGGTCCCAAACTCAAACTCTGTGGTTCTATACCTACTTCTCCCATCATCTAACTAACACTCCAATCCTCACCCTTCTCCATTAACCAATGCCATATTGGACCTTATGGACACTTTGGAAAGAGACTGAATGTAAGGGAACGACTGTTTGACTCTCTAACTGACTGTACAAGTGGACAAAGGGACACCAGGGTCGTATTCACTAGACACCAAGCGGAAGAAAATGCACTGAAATGGGGAGGGAGAATAAgatacaatttttttttgtttcaaaaacgttttgctatggtgtgcactaatgaatatgacccagtaAAGGCGGACAATGAGATATTGGGCACACCGGAGGCCGACACTACCTGTACATTTACCTGAACATTTAACTGTCCCCTTTGAGACTAGCCTATGAGTGATTCCAGAATCTAGCTGAGGAAACCATGGTAACAGTGGACAGACAGGAAGCTGGGAGAAATGTACCCTAAAAACACTACATTACCTATAATTCCACATCTGCAGGCATCTAAATTACACATATTAATGACACAGTACAACAAGTATGGCAACAGACATGTGCATTCAATATCTCAATATCAATCAGTCTAGAAATAAGGATATTCATTCCATAAATAATAACATTAACGTTCGATAACGTTATCATGAATGACCGTGCTGTTGTGTTGAAAGTCATATTTTAGTTGGGCGCACTGGATGTAACAACGTTTCTGGTTTGGTAACTGAGAAATGAAATGCTTTGGCACAATAGGTGGTGGAGGGACAAAACTTGCTGTTTTGAAACAAAAGATGTCCTACGTATTTTCCGTTCAAGATGTTTTGTAGCCACTGTGTTCAAGGTCAATCTCTTTGTCATCAGCGCTACTTCCTGCTATCAGATAATCAGAATCCAAAACTTTGATTCTTTCTTCTCTACGCTGAGTAATAATAACTGCAAGGATGAACTGCTATCATCCACTTTATCCAAAGAGAGTTTGGTAGCACCATTTAATGTGAATGTAACATTGTAGGGAAAGGGGGAGTTGACAGTGTGGAAATGCACTTTCATCTAAAAATGTATCGCTGACAAGGAGGACAGGATGGGAAATGTTCTCAATCATTTATTACAATAAAGGGGACATCTTGCGGGGCCTTGACAAGTGATATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986449 lncRNA upstream 29121 37619947 ~ 37620381 (+) True G1734550
TU1986447 lncRNA upstream 34689 37614578 ~ 37614813 (+) True G1734548
TU1986375 lncRNA upstream 96188 37552117 ~ 37553314 (+) True G1734478
TU1986373 lncRNA upstream 99053 37545149 ~ 37550449 (+) False G1734477
TU1986374 lncRNA upstream 99053 37545149 ~ 37550449 (+) True G1734477
TU1986464 lncRNA downstream 793 37656945 ~ 37657310 (+) True G1734553
TU1986451 lncRNA downstream 2069 37658221 ~ 37658728 (+) False G1734551
TU1986450 lncRNA downstream 2135 37658287 ~ 37658728 (+) True G1734551
TU1986496 lncRNA downstream 30414 37686566 ~ 37686803 (+) True G1734585
TU1986498 lncRNA downstream 33715 37689867 ~ 37690069 (+) True G1734587
XM_036957730.1 mRNA upstream 111678 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA upstream 111678 37430817 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957731.1 mRNA upstream 111678 37431184 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957733.1 mRNA upstream 111678 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XM_036957729.1 mRNA upstream 338262 37248296 ~ 37311240 (+) False zgc:109889
XR_002470081.2 mRNA downstream 45289 37701441 ~ 37703347 (+) True LOC110500309
XM_036957748.1 mRNA downstream 64966 37721118 ~ 37757590 (+) True hdac8
XM_021577611.2 mRNA downstream 102607 37758759 ~ 37765562 (+) False cited1
NM_001165051.1 mRNA downstream 110502 37766654 ~ 37772954 (+) True rs4x
XR_005038750.1 mRNA downstream 111990 37768142 ~ 37768217 (+) True LOC118943013
TU1986376 other upstream 80549 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 277835 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 397327 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 890619 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1413237 36233122 ~ 36236265 (+) True LOC110500325
TU1986710 other downstream 104183 37760335 ~ 37763258 (+) False cited1
TU1986951 other downstream 386939 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 388956 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 421399 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1211815 38867967 ~ 38924928 (+) True arrb2b

Expression Profile