RNA id: XM_021577611.2


Basic Information

Item Value
RNA id XM_021577611.2
length 4440
RNA type mRNA
GC content 0.44
exon number 2
gene id cited1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37758759 ~ 37765562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AtaattttagctaaccctaacactTTTCCTAACCTACTACCTTAATTATCCTAACCAGCTGCTTCAGTTTTGCTGACTTAGGAAAAGGGAGGCAAGAGAGGGCAAGAGTAAAGAGGACGCAGGAGTTGCGCAAATCCAATTGAGAAAAAGCATGGCTTCCATACATTAACCATACACATCCTATCTGCCTGACGGCTTCACTAAAGAAACTCAGAGCCTTGTGTATAGATAAGAACGTTTACTCTCCTCCCCAGCCTGAAATCAAACTCCCAACTCTATTCATGCTGTTGAATAGCACACCTGCCTGCCATGTCCTGTATGACGACTAGACTGACTGCATCAGGCCTTCCCAACGACATTTTATGCAAAACATCATGTTTCCCTCCATAGGATGTCATCATTTGATTTGAATACGACATCAGTTGACCTTTTTAGATTATGAATTGTTTTGTCATAAGATAAGTGTTTGCTTTAGGGCTCAGTCTATAATATAACTAggcttgcaaaaaaaaaatgtatcaaaggAGAGTTGTTGGACATTACAAGCTGACGTTAATTTGCGTTTATGTGGGTCGGTCTGTTTTTACCCGTTTTTTTCTAGTTTTACATTCAAGAGGGAAATTGAAAACCGTTCGTCTCATTTGCATAACGTTTTCTCACCGGGGAGAAAGAGGACTCCCCGTACTTCCATACATCATGCTCGAGCCTCATCTACATGAGAACTGTCCCCGCGCACTGACGGGACTTGACCACAATAAAGACAGATGCTCGCAAGCCTTTATGTGGTTAACTGAAAAGGAATTAAGGCGCGTGGTGTTTTAAAAGAAGGTGCCTTGGCatgttttattttctctctctgacaATATTGAGACGAATTGTTAAAAATCAATGTATGAATGAACagaggatctgaaaaaaatgcTGTGTTATCAATGGATCTGGGTTGATAGGACAACCTCGAATTTTGGGAAATGTTTAGGTCTGTCATTTTATTTCACGATGACATGAGTTATTTGACCTATAGTTGTAACAGAGGACTTTAAAATATTAAATAGGCCTACCTAATTGATGACAGCATCCACGGTGTCTGTCTAAGTAGGCTAGTGCGAGTGTGTTGGCCCACACTGTTTTTCATTTTGGTGTCACATTTTATGTTGTGCAAATCATCAGTTATTGTTTCAAGTGCATTAAGGGGTGTTGGGGCTATGCGTTCCCTCATGAATGATAATCAGTGAGATGGCTGttgagaatagaatagaacactaTTTGATCTGTGATTGTAGAGAAAGGCGCTCGCTCTTGAGAATAAAGAACATCTGCCTCAGTTGAGCGCTTTCATGACGGGCACACGGAAACTATGGAAACTGGATCACTAAGGTACTGGAATTAACCGAACCGTTTGTTGGGCGATAGCCCTTGTGCGTCTGTCCGATTCTCTTCATACTCTTGGCCGGGATTTTGATGCTGTCCAGCCACAAACGCACTTCGCCCGCCGCTTCTTGAGGGTCgagtgtgtgtgcgagtgagtgagcgagcgaaTGAATAATCCTTTAGATTCAGTAACAACACCATTGAGGGAACTCTGCCCGAGTCGTCCAGTCTAGAGAGAAATTGAGAGTGAAGGCGAGACGCTGCACGGGGACAATGTCCTGATCCACAACCGTTTACTTTATGGCTACAGTTTAACAGGACCAAACGGATGACTTGCTAAATATAGACAACTATTAACAAACGTTTTAGTTGATGACAACATTTACTTACTGGTGTGGTTTTGCGAGTTGATTTGGGTTCATTAGACATCTCACCAATCCTCTCCACACACGGACCTTCTCTGCTGTGCTGAACGTTTTTTCTAAAAGGCATCCCCAGGTGATGACCTCACTACTGTTCTCCAGCCCCACCCACGTTGTCATGAAGGACCGCGAGCTGCCGTcatcctccctcaccctcctccacTACACCGGGACGGCAGTGCCTGTCAAGACACCCGGGGGTGGCCCcttaccctcctcctccaccaccctccacacctccacctctccatccctctccaaaCCTCAGCCATTCTGCCTGCAGACCCTCCAGACCGGCCCTCACCTCCTCGCCAGCATGCAGCTCCAGAAACTCAACTCCCACTACCAGAGTCTGGCTGGAGGTATAAGTGGGGGCGTAGCCTCTGGGCCCACGTCAGGACCTCAGAGGGGGTTTGGGGCCTCAACGCTGGGCTCGGCGGGGCAGCTGGTGGGGGTTACCCCTGGAGGTGTTGGAGGGAGGAATCAGGGCTGTGGGGGGATTATTGACTCTGACCCGGTGGACGAGGAGGTTCTGATGTCGTTGGTCGTAGAGCTGGGGTTGGACCAGGCTAACGAGCTGCCTGAACTCTGGCTAGGACAGAACGAGTTTGACTTCATAGCGGATGTACCTGCCGGATGCTGACCCACCCaaatggagggatgaaaggaggggATCTGTGCTCTCTCATTCTTTCCTTTTCATTACTCTCTAGGTTGGATTGACATAAACTCTAATGTCCCGGCTGGGTGCTCACCCAAACACACGAAATtagacattttttggggggggtcacCCTCTGTTTTTCTCTAAAGGACAAGTTATGGACACAACCTGACGCAAAAAGATCATGCTGTTCTCTTGTTTTTCCTGTGTCCCATTCTAAATTTAAAGGAGAAAGGATAGACACAGGGTCTAATGTTTTTGTGTGTCTCACTGAAAATACTATGTTACTGAGGGAACCTGAGCCTCGGGCCTGTCTGTCAATTTCACTCTACTTCCCAAGggccccctacacacacaccggcagaaggagggatggatggtatTACGATCCGGTAATGGAAGTAGCAGCCGTGAAACAGGCACTTGTCACTTATTCAGTTACCCCAACATTCAGGAGAGTTCAGCAGGTTTGATGGAacaccagggtgtgtgtgtgtgtgtgtgtgtgggggggggattgTTCAGGTCCCTGTGACATAAGACAGACATGACAGGAGGCATCAGAAGCCTGTGTAGTCTCGGTGGACCGGTGTAACCTGACCTGTATGGTGCTGTCAGTGTCTGTATCTAAATAAATGAATGAGTCTTAACGTCCGTGGTCTTCGTGTACCTGGTAACTCTGTAGGTGAAATGAATCATAGTTCCACCCCCCTGCCCCATCATTCTTTCTGTCTATtataagtccccccccccccccccctccatctctgtccccTGTGGTCCTAGAGCCAAGATGCTCCATTACTACCTACTCTGCTGTTGTACCGTCAATGTgtatgtccaaaatggcacccaattccttatatagcgcactacttttgaccagggcccatgcactacttttgaccagagccctgtgtgtcctgttcaaaagtagtgctgtttttatatgtatatatgagagaatagggtgccatataggACATGTACAATAGTTCCTGAGGGTTACAGGTAATGAGGCGGTTAAAGAAGGGTGACTTTaaaaaatgttgtattttttttgGAGAGGGGTTGACTTGTGAGAGCTGAAGGCTAATTAATTATAAACTAATGATTGCGTAaattaattatttttttgaaCAGTACCTGTTCAGAAGACTACAGAAACAAGATTACCTCTTAATAAAGAGGAAAAGTTCCAATTGACTAAGTTCCCATGTTCCAATTGTGAGTCACTTGGCATCATCATGCTTCTTTCACCATGTGATACGATGGTGTTTTTACCTTTTCGAGTTAGTCAGTCAGTAGGCCGGCAGTAGACTAAAGCAGGAGTAGGCTACATATCTAAACAGGGTccttattgttttgtagttttagTTGCTGGATCACTTGATCGTAAGAGAgcacgagtgtgtgtgtgactgcttgCATGGGAAAGTATTCCTGTAAGTTTCCCTTTAAGTTTTGACTCCAAGGAAATGCAAGATAACTACACCAACTTATTTCCTAATCAGAAACCCTTTGAGCTTCCAGACTAGCAAGAACATTTACTTTtcattaaatgtttgttttacttTCCTTATGACATATCTGATATTTTTGTGGtcattttctttttgttttagcTTGAGAAACACTTCTTGCTATTGATTTTGTAAAGGAAAAAAAatgttggagaaaaaaaaaagaatcacTTGTCTAGCTACTGCACTGATTGTATGGTCCTAAGTTTCTCTCTTTAAATCACACCTTTTTTTTAATTGAGGCCTTATTTTAGAAAGGGGGAGGGACCTAtttcttttttctcttttttgtttttgaaatgacaGGTGGAATCATAACTGATGTTGATTTTTGTTTTAGCACTTTCTCCGTTTGCATCTCATTTGTATCTTTATGAAAATATGTACTAGATCATATTTAAATGCTTGTATTTTTGTTACTTCTCTGCATTTGGGGGAAAATAAAGAATACAAACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986719 lncRNA upstream 41546 37716897 ~ 37717213 (+) True G1734762
TU1986699 lncRNA upstream 58822 37699418 ~ 37699937 (+) True G1734745
TU1986697 lncRNA upstream 61768 37696759 ~ 37696991 (+) True G1734743
TU1986499 lncRNA upstream 67628 37690913 ~ 37691131 (+) True G1734588
TU1986498 lncRNA upstream 68690 37689867 ~ 37690069 (+) True G1734587
TU1986764 lncRNA downstream 23843 37789405 ~ 37789781 (+) True G1734802
TU1986830 lncRNA downstream 122962 37888524 ~ 37888725 (+) True G1734864
TU1986844 lncRNA downstream 139060 37904622 ~ 37905024 (+) True G1734877
TU1986845 lncRNA downstream 141015 37906577 ~ 37906780 (+) True G1734878
TU1986891 lncRNA downstream 211538 37977100 ~ 37977958 (+) True G1734921
XM_036957748.1 mRNA upstream 1169 37721118 ~ 37757590 (+) True hdac8
XR_002470081.2 mRNA upstream 55412 37701441 ~ 37703347 (+) True LOC110500309
XM_021577614.2 mRNA upstream 102607 37649502 ~ 37656152 (+) False LOC110500311
XM_036957732.1 mRNA upstream 220935 37430817 ~ 37537824 (+) False si:dkey-172j4.3
NM_001165051.1 mRNA downstream 1092 37766654 ~ 37772954 (+) True rs4x
XR_005038750.1 mRNA downstream 2580 37768142 ~ 37768217 (+) True LOC118943013
XR_005038751.1 mRNA downstream 4286 37769848 ~ 37769923 (+) True LOC118943014
XR_005038747.1 mRNA downstream 5751 37771313 ~ 37771447 (+) True LOC118943010
XM_036957749.1 mRNA downstream 35496 37801058 ~ 37953220 (+) False nhsl2
TU1986376 other upstream 189806 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 387092 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 506584 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 999876 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1522494 36233122 ~ 36236265 (+) True LOC110500325
TU1986951 other downstream 277529 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 279546 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 311989 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1102405 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1413725 39179287 ~ 39209485 (+) True nat16

Expression Profile