RNA id: TU1986710


Basic Information

Item Value
RNA id TU1986710
length 560
RNA type TUCP
GC content 0.53
exon number 2
gene id cited1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37758759 ~ 37765562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACTCTGCCCGAGTCGTCCAGTCTAGAGAGAAATTGAGAGTGAAGGCGAGACGCTGCACGGGGACAATGTCCTGATCCACAACCGTTTACTTTATGGCTACAGTTTAACAGGACCAAACGGATGACTTGCTAAATATAGACAACTATTAACAAACGTTTTAGTTGATGACAACATTTACTTACTGGTGTGGTTTTGCGAGTTGATTTGGGTTCATTAGACATCTCACCAATCCTCTCCACACACGGACCTTCTCTGCTGTGCTGAACGTTTTTTCTAAAAGGCATCCCCAGGTGATGACCTCACTACTGTTCTCCAGCCCCACCCACGTTGTCATGAAGGACCGCGAGCTGCCGTcatcctccctcaccctcctccacTACACCGGGACGGCAGTGCCTGTCAAGACACCCGGGGGTGGCCCcttaccctcctcctccaccaccctccacacctccacctctccatccctctccaaaCCTCAGCCATTCTGCCTGCAGACCCTCCAGACCGGCCCTCACCTCCTCGCCAGCATGCAGCTCCAGAAACTCAACTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986719 lncRNA upstream 43122 37716897 ~ 37717213 (+) True G1734762
TU1986699 lncRNA upstream 60398 37699418 ~ 37699937 (+) True G1734745
TU1986697 lncRNA upstream 63344 37696759 ~ 37696991 (+) True G1734743
TU1986499 lncRNA upstream 69204 37690913 ~ 37691131 (+) True G1734588
TU1986498 lncRNA upstream 70266 37689867 ~ 37690069 (+) True G1734587
TU1986706 lncRNA downstream 154 37763412 ~ 37765535 (+) True cited1
TU1986764 lncRNA downstream 26147 37789405 ~ 37789781 (+) True G1734802
TU1986830 lncRNA downstream 125266 37888524 ~ 37888725 (+) True G1734864
TU1986844 lncRNA downstream 141364 37904622 ~ 37905024 (+) True G1734877
TU1986845 lncRNA downstream 143319 37906577 ~ 37906780 (+) True G1734878
XM_036957748.1 mRNA upstream 2745 37721118 ~ 37757590 (+) True hdac8
XR_002470081.2 mRNA upstream 56988 37701441 ~ 37703347 (+) True LOC110500309
XM_021577614.2 mRNA upstream 104183 37649502 ~ 37656152 (+) False LOC110500311
XM_036957730.1 mRNA upstream 222511 37430796 ~ 37537824 (+) False si:dkey-172j4.3
XM_036957732.1 mRNA upstream 222511 37430817 ~ 37537824 (+) False si:dkey-172j4.3
NM_001165051.1 mRNA downstream 3396 37766654 ~ 37772954 (+) True rs4x
XR_005038750.1 mRNA downstream 4884 37768142 ~ 37768217 (+) True LOC118943013
XR_005038751.1 mRNA downstream 6590 37769848 ~ 37769923 (+) True LOC118943014
XR_005038747.1 mRNA downstream 8055 37771313 ~ 37771447 (+) True LOC118943010
XM_036957749.1 mRNA downstream 37800 37801058 ~ 37953220 (+) False nhsl2
TU1986376 other upstream 191382 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 388668 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 508160 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1001452 36756989 ~ 36758883 (+) False G1733187
TU1984576 other upstream 1524070 36233122 ~ 36236265 (+) True LOC110500325
TU1986951 other downstream 279833 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 281850 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 314293 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1104709 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1416029 39179287 ~ 39209485 (+) True nat16

Expression Profile