RNA id: XR_005038750.1


Basic Information

Item Value
RNA id XR_005038750.1
length 76
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC118943013
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37768142 ~ 37768217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATGAAGACAATATTTGGTTTTGATCAATGAGCTGAAAAAAATCTCACCAATACCTCTAAGAAGTTCTGAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986706 lncRNA upstream 2607 37763412 ~ 37765535 (+) True cited1
TU1986719 lncRNA upstream 50929 37716897 ~ 37717213 (+) True G1734762
TU1986699 lncRNA upstream 68205 37699418 ~ 37699937 (+) True G1734745
TU1986697 lncRNA upstream 71151 37696759 ~ 37696991 (+) True G1734743
TU1986499 lncRNA upstream 77011 37690913 ~ 37691131 (+) True G1734588
TU1986764 lncRNA downstream 21188 37789405 ~ 37789781 (+) True G1734802
TU1986830 lncRNA downstream 120307 37888524 ~ 37888725 (+) True G1734864
TU1986844 lncRNA downstream 136405 37904622 ~ 37905024 (+) True G1734877
TU1986845 lncRNA downstream 138360 37906577 ~ 37906780 (+) True G1734878
TU1986891 lncRNA downstream 208883 37977100 ~ 37977958 (+) True G1734921
XM_021577611.2 mRNA upstream 2580 37758759 ~ 37765562 (+) False cited1
XM_036957748.1 mRNA upstream 10552 37721118 ~ 37757590 (+) True hdac8
XR_002470081.2 mRNA upstream 64795 37701441 ~ 37703347 (+) True LOC110500309
XM_021577614.2 mRNA upstream 111990 37649502 ~ 37656152 (+) False LOC110500311
XM_036957733.1 mRNA upstream 230318 37484631 ~ 37537824 (+) True si:dkey-172j4.3
XR_005038751.1 mRNA downstream 1631 37769848 ~ 37769923 (+) True LOC118943014
XR_005038747.1 mRNA downstream 3096 37771313 ~ 37771447 (+) True LOC118943010
XM_036957749.1 mRNA downstream 32841 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA downstream 44443 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA downstream 125766 37893983 ~ 37953220 (+) False nhsl2
TU1986710 other upstream 4884 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 199189 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 396475 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 515967 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1009259 36756989 ~ 36758883 (+) False G1733187
TU1986951 other downstream 274874 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 276891 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 309334 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 1099750 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1411070 39179287 ~ 39209485 (+) True nat16

Expression Profile