RNA id: XM_036957751.1


Basic Information

Item Value
RNA id XM_036957751.1
length 9373
RNA type mRNA
GC content 0.50
exon number 9
gene id nhsl2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37801058 ~ 37953220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAgaaatctctctcctctctctctcgctctctctctctctctctctctctctctcattcttgctGACACACTCCTAGCTTCAGTCAGCTAATGACTCACAAGACTTACCTCATAGTCTGGAgcgtctctttctttctctccctcttcccctctcgctTCCCGTTCCCACTCCTACTGAGTGAGTAAGTGTGAAAGCAGACATGGAGAAGCTGGAAGTTTTACGGACCAGGTCAGccAACACCAACTTGGACGCAGAGTCGAAGCGTAGTGCGGCTTCGTCGTCGACGGCGACATCGGCCCACTTCCGGTCTCCATGGCAACAGAGCGTGAATGTGTTTGGCTCGTGGAGCAGGCCGGACTGTGTTCAGGAGCTCCATCAGGAGGCTCAGCTTAACCTGCAGAGCCTGCTGCAAGACTTTGAAGAGCAGCTGTATGACACCAAGCTAACAGGCCAGACGTTCCGCCACCCAACAGCTTCCTCCCAGAGTTCTGACGACACGTCCACCACCCTCAGTCGCTCCCCTGTCTCCCTCAACAACAAGAGACCTGAATTCATCTTCCTGccGGCGTCTAAGGGGCAGGTGTGTGAGGAGGATGAGACCTCCTCAGTAAGTATCAGTAGGGGTACAGACccgtccccctctccttccccatcccccTGTGGGTCAGATCGCCCTCTAGTGGGGTGGAGCAGCACCTCCCTGGGACCCCCCGTGGCCGAGAAACCTCGTTGGCACCTGGGACGACGCACCCCTGCTCACCTGCTATCCCTCGACATCACAggtgAGGGTAAACTCTTGGGCGTAGACCTCCTCCAGGGATCCTGTTCCCCCTCTCCGTCCCTGGGCTGTGGTGGAGGAGGCCAGCCCCGGTCTCTGGAGCCTGTCACAGACACCCCTGTCCAGCACATACCCCTGAGAAAGACCCATAGTGACTTGGACCCCAGCTTCAGCCTTCCCCAGTCCCCCAGGAACCCCCCTCCTACCCTGAGCACCATGGACCACTCTGCCGCCCTCCTCTGCTCCAACTCCCCCTCTCAGTCCTGGAACGGCCCCAAGGGCTCCACCTTCTCCCCGGGAGCCTGGAACGAGGCCTATAGTTATAGTTTAGCTCCAAGTCCGCTGGGGAAGGGACCGGCGACCATGCCCAAGGGAGCAAGGATGGTGGGGATGGTTGCGGGGCAGGGTGGGGAGTTGATGTGCCCCTCTCAGACCAGTTTGGGACTCTCCGTGAGCTCGGGGTCGCAGTCTCACTCTAGTTCGTTCACGTCAATATCAGAACCTTCCGGACACAGGCACCCAGGCACCATAGGGATGATGATGGGGAGGCGgagtgagacagagggggcgGCATCTAGCCCCACTGACGAACGGAGTGgtctggagagagggatgggaggaggagagagaagggagaggtcgGCGCGTTCTGTCGCCGCCGCCAATGCATTTAAGTTCCGTGAGCGTTCTCTTTCCACGCCGACGGATTCCGGCTCGTTCTGCTCCACGGACAACATCTGCGGCGGGATGTACGGCCTCGGTGGACTACCTGGAGCCGGTAATGGGACAAACGGGAACGGTGGCGGCGTTTTAACAGAGATGCGCCACCCACACCACCATTACCCTGGCGGCGAGGGCGGTGAGAGGGGCGAGAGCTATGCCCTCTTCTACCCCAGCGGGAGCTCCGAGGATGGGAGCAACAGCATTGACAACGTCTCCGTAACCGACGGCAACTTCCCCCCGGGCGGTCGACTACGGTTACGTTCTCGCTCCATCTCGCTGAAGAAGTCCAAACGCAAACCCCCTCCACCCGTCCGGAGCGTCTCGCTCGTGAAGAATTTAGGGGACGCCGAGGGGCGCGTGCATGGCCACAACGGAGGGCACTACCGGGATGGACGCCCCAAATCCCTACACATCCCCCGGGACCACCTCCAGGACTTCCAGCCAGACTTCCtcctaccctcctcctccctctccaagCCCGATCTGGAGGAGCCTGAGCTGGGCCACGGCGGCGTGGACGGACCCCCTAGCCTTGAGGTCCACGGACCAGACACAACAGAGCTGTCCTTCCCAGCCCACTGGCAGCTGGAGGAGTGGAAAGCTTCTGACCCCTACAGGTCGTTGTCTGGGTCTAGTACAGCCACAGGGACGACTGTTATAGAGTGCATGAAGGTTCGGGGCAGCTCCGAGTCTCTCCTGgactctccctccacctccagagccacctccccctccctgctCTCCATTGAGGCAGAGTCGACCAAAGCTTCCTCCCCCTTCAAGCCACCAGGACTCATGTCCCCCTCCAGCGGCTACTCTAGCCAGTCAGAAACTCCGACGCCCATCACCCCCTCCAACCAGGTGGCAGGAACACCAACAGGGCCCGCCTGCACGTTGGGGTGTAAGATGCGCCCCAAAATCCCAGAGAGGAAGTCTTCGTTGCCAGCTACATCACCACGGGACCCTGCCGCCCGATCGAGGCTGTCCTTCGAGATGCCGGTTAACGCTCATCTGGATTTGTCCTCCATCAAACCAAAACAGAAGGCCAGCCGGCGCCATTCTGACACGTCCACCGCCACTAAGCCCGGTAAACTGAGTGCCGGCGGCCAATCAACTCTCCCAGTGGTGACCACGAACGAGCTCCGGAACATCCGCCTGCGTTCTGTCTCCCGTACTGACCTGGAGGACTGCCTTGATGGAGCCTCTAATGACATCATTGAGGAGGAGCAGGGTCGCGACCTTTCCCCCCCTCCTGTCACCCCCGGTTGCATCCCCGGCCCCCTCGTTGCCCCCAGACCCAAACCCCCTGTGGCCTTCAAGCCCCCATTACCCAAACGCCCCCTCAACATCCTCCTCaagtccccctcctcctcccccgttGCTTCCGAgtccccccctgcctcccctgtTGACCCTCCCCGGCCCATGCCTAACCCCAGCATCTACATGGTGGTAGGTAGGAAGCCCAAGCTGAAGAAAGCCTTCCCTCACACCCCCACCAGCCCCTTTAGACCCCAGGAACATCCCCAAACCTTCCCCCTCCACTACCCCCAGAGCCTCTATGATGCCCCCTCCTTCCCCCACACCCGGTCCCTGTACGAtctgcctcctctccccctgccccAGCCCCTCCTGGAGGACCCCTCCATGGAGCCGGAGTTCAACCCTGACTTGGAGCTCCGTCTTGGGCCTGAGGATGGAgggtctctcccctctccctgcagTAACCAGGAAGTGCAGGAGACTCAGGATAAGAGCAAGTCTCTACCTAGCAGGATGACCATATCCTGTCTGGCTGAATTGGACAAGAAGAAACCCAAGGTTCCTCCGCCGGTTCCAAAGAAGCCCAACGTTCTGCTTCTTCCCTCCAACGGTACCACCGACAGACAGGGAACACAGACAGACTGCCCTGCCGCCCTCCGCTCTCCCGTTGGTGCGTTCCCACCAGAAGTGATTCCCGGGAAAGAGGAAAACCAGGAAAATGACCTGGGAATAGGGACGGATGAGGAAAGCTCCATGGAGTCTTCATTACAGGGCTCTTCTTTTACAGACGTGGAGGGGAGGCTCAGCATTACAGAGACAGGCAGAAGTGATGATGCGGAGAGTGTTGAGGAGAGCAGTTTGGTCGTTAGTGACAAGACGGAACTCCACATCACAGAGGAAATGGATGATGATGTCAGAGGACACACACctaccacacacaccacagaggacCTGTTCACCAAAATACACAGgtcAAAAAGGAAAGTCCTGGGCCGTAAGGAACCAGGGGACTCGTTCGGCAGCCGCCAGAGTCTGGTCTCTCCGGTGAAGCACAGCACCAGTGGTGGTGACCTCCGAACCCTGACCTTGGGCTCGACCCCGCGCTCCACCTCGCGGAATGACAACTTCATGGCCCTGCTCCAAAAGAAGGGCAGCAAGTCCAGCACGGGAGGGGCCAGAGTCTCTGCTATGGAACTCCTCAAGAGCACAAACCCCCTCGCACGACGCGTCACAGAATTCTCCACCTCGGCAGACGGAGGAGGGGATATGACCACCGGGAATAATGGAACCAGAATGCCTCAGGACCAATGAGAGTTTTTAAACCAATTGTCCCaggtcatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctctctctctctctctctctctctctctctctctctctctttctctcttatctCCCGAGAAAGTAGTTTGAATCTAGTTATAGACTTTTCGATCGGACTATTGATGGAAGAAAGGAACGTCCAACCAGACCACTCAACCACTGATTGACCTTTCACAAACGTTTATTAACTGGCCAATGGTTGGTCACAATGGTCATCAAAGGAGTTCTGTTTATCACGCCGTCCGTTCCATCATTAAGGGGTATTCTTTTTTGGAGGTCTCCTTCAGTCTAAAGGAGAACATTAGGATTGTTAATGTCATACTTCAAcacactatttttttttttaaacgagagAGAGACTATACTAGGGAACGTTTGATTGGATAATAGACCTGGGTACATCGCAGGCCTGTGCTCGATGGCGACAGATGCCACACTAGTCTTTTGAAGAcatggggtgagtgtgtgtgtcgtaTTTTCTGTCCCtcgcacaacaacaacaacaacaacaaaaccacAACGGTTTAAATCGAAAACATTCCACGGGAAGATTGACAGTTGGACATGGTACCAAGCCCCGATCCTTTATGTTTGAATCAAAGCACTTTGGCGACTGCCTACCGAGGTAGTTTACAACAACGAGGAAAACAACAACGCCTGTGTCCTCCCTGTTATTCGTTTGTTTATGTTTCTCTTTTCATACGCGATAGAAGGCCATATAAATGTACAAAGATATACATACATACCGTATAAACTGAAAAAATCCGCTTGAACTGTTCTAACAGACTATGGAGAGCCAcagtagtagtataatagtacTACACTAGTACTAACAGTAGTAGTACAATAGTACTACACTAGTACTAACAATAGTACTAACAGTAGTAGGACAGAAGTACTACAGTAGTACTAAcagtagtagtataatagtacTACACTAGTACTAACAGTAGTAGTACAATAGTACTACAGTAGTACTAACAATAGTACTAACAGTAGTAGGACAGAAGTACTACAGTAGTActaacagtattagtagtagtactacaGTAGTACTAACAGTAATAGTACTACAGTAGTACTAACAGCAATAGTACTACTGTAGTACTAACAGTAGTAGGATACTATGTGATACACCTCACAGCACACAACAGGATCAAACCAACTGAACTGAAGGAGCGACGCTATGGAACACAATCCCACGAACCCTTACCCACGGATCTCCTCGCACTGccgtcagagtgtgtgtgtacttgcgtgcgtgtgtgtgtgtgtgtgtgtgtatacaggaaATGATAACCAAACACAGCAAGGGAGGTGTGAAAGATGGCGGGCacagaattgaaccctgtggatcTTTCTTAACAGAGAGTATGATACAGGGTTGGGTTTATTTAACAGGGTTTAGACTGGTTTCCGTTAGGACCAAAGGACTGCCATAAACAGACCAgtggaaacgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggacaaGGGCTTCATTTATCCGCCCTAAGGAGAGGATTAAGTGGTCTGAATCATGTGGCTGTAGTCTTTGGAGTTTTCCGTGACGTTTTGGAACTGAGAGAGGATTCTGGGCCTGAGGGGATTCCGGAACTGTGATTAGAACCCACTTTTCTAACAACCATCACAAAACAAACCGAGACAGTCCAGGAAAACAGCTAACCATCCATCGGCCATATTGAAAAATGCATCACCCTCTTCTTTTTGCCCTCTCCACATGTTTTTTTCTCATACTGTCCGTTTTGTGCAGGGGTGATGTCGCAGCCTTTTCCCCTcgtccactctccctctcttctcgtccactctccctctcttctcgtccactctccctctcttctcgtccactctccctctcttctcgtccactctccttctcttctcgtgcactctccctctcttctcgtccactctccctctcttctcgtcCTCCTTCCTGGCAGGAACACAtgctccatctgtctctctctctctctgcccatggAGTAGCCCCCTCCTCTTCACATTTCTTcgtcctcccctcatccctccctccgtgCCCCTCCCATTCTTTCTGTGCATCTGAGCTCACAGACGACACAGCCTGAATGTCAATGGAAGGAAAGAAAAGGACGCCGCGTTGATATCGTGTTCAAGAGTGCTATGTTCAACTTCATCTTTCGATCCAACCCTCTCTGTcaaaaatacaaatgttttttttatttttaatccttcTGCTGCATTGTGCATCTGTCCCTATATCCAGACCAAACCAACCATCCATGTTACAAGGAAAACAGGAGGGTGGATTGTGTGAAAGAACACACAAGAGACGGATGGAAAAGGGTATGAATGTCTGGATGTGTACTTAAAAGGAAAGGATAGTGGACTTCTGGACCCACTCAGACTGTGAACACGGATCTTAACCTATCCTCCTTTCACCACACTTTTCCAGAACCATTACATTGGGGCTGTGCAAACCCTGGTGCTATTAAGCTACAGCGCCCCCCTGTGGATGAAGAGAGGGAGCACACCCTGTAAGACTACTGCTCTGTCCCTCCAGCAACAACACGGAGACGCAACGACTCCAGATTAATATCTGGATGCTCTTTTTGTTATATCGGTCATTCAGGAAACCAGAACAACAACGTCAACAACTTATAAAGACAATGAAAAGAACGAGAGAAAAAAAACCTATGTAAATGAACACATTATTAATAAATAGTCAAGTGACGCTTGTTTTAAATATTTAGTGAATGgaactacataaaaaaaaaataactatGACAAAACTCAGTGTTAGTTTGCCTTGTAGTCTGGCGTGATGTTTAACCTTCTGTGTTTtctacatagaaatataattactagaatggACACCCCTATTTACGTCAATGGGGCCATAATGTCAAATTCCTATGGTCAGAGGTTCTATGCCCATTCTACTGGTTATATTCTATGGTTTTCAGCTACCTTGATATTACACTCCCTTTGAGGTATGCAGAGTTGTTACTCTTTCTGTTCTGAAGTACTGTAGTTATTATGGTTACTAAGGTAATGCTGTATACTATGGTTACTACAGTCATATACTGTGGTTATTACGGTAATACTGTATACTATGGTTACTACAGTCATATACTGTGGATATTACGGTAATACTGTATATTATGGTTACTACTGTCATATACTATGGCTGTTACAGTAGTGGTCGTCACTATTCCTACTATTACTACTCTTGGCTGTACCCTTATATTGTTCATAAAACACAGGTACaacgatagagagaaagagggagagagaaagagttgaaAAAAATGTAAGCAATAGATAGATGACTTAGCCCAAGACCGAGGATGAGGCAGGAACACAATACTGTAACTCTCAATCCAGTAGCAGATTCCAGCTCTAGCCACAGAAATGGTTGCGcagtgctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagaaatacagaTTTGTTCAGTAGCCTACAGTTGGCACATACAGTGATTTATCATAGTGGGTTCCAAACTCCAATCAACCATGTCTAGGAATGTGGTAGAGTATTACAGAGTATGGGAGCAGAAGAGAAAGAGGTatgaggatagggggaggggggCGAGGGAGAGAAGGTGGGTAACATTTCACGAGTGGATATATCACTCCTCTGAAAGAGGGGATCACAGTTGGGTTAATACAAGTTCTGTCCATcgatttattttctttctttctttctttccttctttctttccttctttctttccttctttccttttttccttttttctttttttccttccttccttccttccttctttccatctttctttctgtctttctttctgtctttctttctgtgaTAAGGACAGCTCTTAAAGCTTTCCCCAAACTCCCCACAGAACACTAAAagtctagagagagggagagaagaagagagagggagagaagaagagagagggggagaagaagagagggggagaagaagagagagggagagaagaagagagagggagaggagggatgacagAAAAAGATGTCCTTTAGTCAGTTTGTGTTTTATATCTTGTTTCTGCATCGACATCAAACAGCAGCACGACAAGCTGTTAACAACCATCTGGTTGTCATGACGcctaacaaacaaacagacatatTAATCTTAGCCTTTGTCTCAAATCACATCCTactccctatctagtgcactactctggTCTAACACTTGAAAGGGTTTCAAATGAGATTTGATCGCACCCTTTTGAGCTATGTTGAAGTGTTAATCTGTATATACAATGTAAGTACCATTAGACGACCCTTATTCAGATTAAATATAGAGGTGATAGGATGATTAGGGACAGGAGTTATTTTTCTGTCAAAATATGTACTTTTTTTTTCCCCGAACAACATTCTTACAGAAATCTAGCCCCATAATTTTCCCTCACCACATTACCTAACCAATGCAGGAAAAACTCAGGGTCCTAGTTATAGGCTATGAGAAACAAATAGCATATAACTCTCGGCCCAGAGTGTTTCCCggtcaggtcatgtggtcaggaaaaactcctgtccCTAAGTATAATGAGTATAACCGATAATTAGTTGTACAGCAGTTTTAAACTGCTCACAGTACTCTCTGTATGTATAGGACCAGGACAATAATAAAGTTTTATTAAGTtaaaagacacacacaaaaacacccaCGAAACAAGATGAAGTTTGTTGGGTTAGGCTActcaaataaagagagagagagagagttcttgGAATTATTCTATTTTTGTTATTTCTCATTGGAAGGACATATTTAAAACTCTACTGCATatatgattattattatgataATTATCAATAACCTCAGTTTTCAGATCCAGCAGTGTGGTTTATGTAGCTGTTGGTTTGAACACATGCAGCTATGTATGTCTTGCCAATGTGATTCAAATTATTATATCATTCAAATAAATTATTTTTCTTGCTTAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986830 lncRNA upstream 5258 37888524 ~ 37888725 (+) True G1734864
TU1986764 lncRNA upstream 104202 37789405 ~ 37789781 (+) True G1734802
TU1986706 lncRNA upstream 128448 37763412 ~ 37765535 (+) True cited1
TU1986719 lncRNA upstream 176770 37716897 ~ 37717213 (+) True G1734762
TU1986699 lncRNA upstream 194046 37699418 ~ 37699937 (+) True G1734745
TU1986891 lncRNA downstream 23880 37977100 ~ 37977958 (+) True G1734921
TU1986952 lncRNA downstream 89871 38043091 ~ 38045066 (+) True G1734960
TU1986956 lncRNA downstream 94231 38047451 ~ 38047988 (+) True G1734963
TU1986817 lncRNA downstream 97863 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA downstream 97863 38051083 ~ 38056244 (+) True G1734853
NM_001165051.1 mRNA upstream 121029 37766654 ~ 37772954 (+) True rs4x
XR_005038747.1 mRNA upstream 122536 37771313 ~ 37771447 (+) True LOC118943010
XR_005038751.1 mRNA upstream 124060 37769848 ~ 37769923 (+) True LOC118943014
XR_005038750.1 mRNA upstream 125766 37768142 ~ 37768217 (+) True LOC118943013
XM_021577611.2 mRNA upstream 128421 37758759 ~ 37765562 (+) False cited1
XM_036957753.1 mRNA downstream 4797 37958017 ~ 38050782 (+) False arhgap36
XM_036957755.1 mRNA downstream 4797 37958017 ~ 38050782 (+) False arhgap36
XM_036957754.1 mRNA downstream 39881 37993101 ~ 38050782 (+) True arhgap36
XM_021577605.2 mRNA downstream 123763 38076983 ~ 38083972 (+) False LOC110500301
XM_021577652.2 mRNA downstream 179839 38133059 ~ 38166964 (+) False LOC110500338
TU1986710 other upstream 130725 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 325030 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 522316 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 641808 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1135100 36756989 ~ 36758883 (+) False G1733187
TU1986951 other downstream 89871 38043091 ~ 38045066 (+) False G1734960
TU1986954 other downstream 91888 38045108 ~ 38046506 (+) True G1734961
TU1986976 other downstream 124331 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 914747 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1226067 39179287 ~ 39209485 (+) True nat16

Expression Profile